Wall clock time and date at job start Mon Mar 30 2020 03:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34664 * 119.72119 * 2 1 4 4 C 1.40814 * 120.61890 * 179.73292 * 3 2 1 5 5 C 1.35882 * 119.76946 * 0.53849 * 4 3 2 6 6 C 1.40965 * 119.17551 * 359.73654 * 5 4 3 7 7 C 1.37998 * 133.70983 * 179.97438 * 6 5 4 8 8 C 1.50698 * 126.26960 * 0.02562 * 7 6 5 9 9 C 1.52999 * 109.47381 * 89.99396 * 8 7 6 10 10 C 1.50698 * 109.47381 * 179.97438 * 9 8 7 11 11 H 1.08000 * 119.99723 * 0.02562 * 10 9 8 12 12 C 1.37876 * 120.00095 * 180.02562 * 10 9 8 13 13 N 1.31513 * 119.99987 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 120.00240 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.46616 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47114 * 119.99334 * 14 12 10 17 17 H 1.48498 * 109.46994 * 239.99805 * 14 12 10 18 18 N 1.33402 * 107.46125 * 179.97438 * 7 6 5 19 19 C 1.30902 * 109.86798 * 0.02562 * 18 7 6 20 20 N 1.35028 * 109.37664 * 359.97438 * 19 18 7 21 21 H 1.09002 * 109.47152 * 269.72799 * 1 2 3 22 22 H 1.09001 * 109.46980 * 149.72900 * 1 2 3 23 23 H 1.09004 * 109.47113 * 29.72881 * 1 2 3 24 24 H 1.07998 * 119.69047 * 359.97438 * 3 2 1 25 25 H 1.07996 * 120.11803 * 180.27192 * 4 3 2 26 26 H 1.08003 * 120.41179 * 179.76282 * 5 4 3 27 27 H 1.09001 * 109.47242 * 209.99509 * 8 7 6 28 28 H 1.09003 * 109.47388 * 329.99804 * 8 7 6 29 29 H 1.09006 * 109.47379 * 300.00566 * 9 8 7 30 30 H 1.09003 * 109.46857 * 60.00313 * 9 8 7 31 31 H 0.97005 * 120.00200 * 180.02562 * 13 12 10 32 32 H 1.08002 * 125.31286 * 180.02562 * 19 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1747 1.1695 0.0000 4 6 3.5826 1.1916 0.0056 5 6 4.2757 0.0228 0.0001 6 6 3.5676 -1.1961 -0.0057 7 6 3.9511 -2.5217 -0.0124 8 6 5.3659 -3.0404 -0.0151 9 6 5.8449 -3.2232 1.4265 10 6 7.2596 -3.7425 1.4238 11 1 7.7665 -3.9237 0.4875 12 6 7.9067 -3.9864 2.6166 13 7 7.2895 -3.7653 3.7567 14 14 9.6605 -4.6295 2.6134 15 1 10.1251 -4.7928 1.2123 16 1 10.5426 -3.6653 3.3187 17 1 9.7077 -5.9421 3.3063 18 7 2.8399 -3.2598 -0.0150 19 6 1.7881 -2.4805 -0.0109 20 7 2.1865 -1.1904 -0.0048 21 1 -0.3633 -0.0049 1.0277 22 1 -0.3633 -0.8876 -0.5180 23 1 -0.3633 0.8924 -0.5096 24 1 1.6251 2.0992 -0.0004 25 1 4.1098 2.1341 0.0100 26 1 5.3557 0.0276 0.0005 27 1 5.4007 -3.9985 -0.5337 28 1 6.0135 -2.3273 -0.5253 29 1 5.8101 -2.2651 1.9452 30 1 5.1974 -3.9363 1.9368 31 1 7.7449 -3.9366 4.5959 32 1 0.7618 -2.8170 -0.0114 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261234186.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:41 Heat of formation + Delta-G solvation = 47.619290 kcal Electronic energy + Delta-G solvation = -15175.406934 eV Core-core repulsion = 12714.641090 eV Total energy + Delta-G solvation = -2460.765844 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.73377 -38.62716 -36.12923 -34.86144 -33.20246 -32.32396 -29.64363 -28.04075 -26.78058 -24.08870 -23.69091 -22.88501 -20.66917 -18.73950 -18.40319 -17.31898 -16.93694 -16.61093 -16.46271 -15.40468 -15.14996 -14.64378 -14.37339 -14.27874 -14.00074 -13.44561 -13.23470 -12.95521 -12.84417 -12.56135 -12.41778 -12.33368 -11.92076 -11.83562 -11.30999 -11.18000 -11.02164 -10.56882 -10.13970 -8.28016 -8.14430 -6.32038 -0.07859 0.35136 1.40562 1.42293 1.56134 1.71094 2.10008 2.42291 2.50831 3.13408 3.47646 3.61477 3.83842 3.93171 4.00471 4.24523 4.41609 4.54371 4.67079 4.71987 4.83140 4.87489 4.89893 5.07119 5.12984 5.22630 5.38621 5.48245 5.62228 5.68083 5.76477 5.82649 6.22214 6.37525 6.84517 6.99492 7.37445 8.93518 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.043647 B = 0.005713 C = 0.005410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.359774 B = 4899.782849 C = 5174.705793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.062 3.938 3 C -0.141 4.141 4 C -0.112 4.112 5 C -0.107 4.107 6 C -0.011 4.011 7 C -0.014 4.014 8 C -0.014 4.014 9 C 0.046 3.954 10 C -0.541 4.541 11 H 0.066 0.934 12 C -0.002 4.002 13 N -0.937 5.937 14 Si 0.972 3.028 15 H -0.258 1.258 16 H -0.275 1.275 17 H -0.279 1.279 18 N -0.494 5.494 19 C 0.132 3.868 20 N -0.370 5.370 21 H 0.092 0.908 22 H 0.079 0.921 23 H 0.117 0.883 24 H 0.189 0.811 25 H 0.167 0.833 26 H 0.140 0.860 27 H 0.056 0.944 28 H 0.073 0.927 29 H -0.012 1.012 30 H -0.024 1.024 31 H 0.264 0.736 32 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.922 13.079 -8.818 21.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.039 4.039 3 C -0.161 4.161 4 C -0.132 4.132 5 C -0.127 4.127 6 C -0.120 4.120 7 C -0.148 4.148 8 C -0.052 4.052 9 C 0.008 3.992 10 C -0.579 4.579 11 H 0.084 0.916 12 C -0.200 4.200 13 N -0.578 5.578 14 Si 0.796 3.204 15 H -0.182 1.182 16 H -0.200 1.200 17 H -0.205 1.205 18 N -0.208 5.208 19 C -0.143 4.143 20 N -0.043 5.043 21 H 0.111 0.889 22 H 0.097 0.903 23 H 0.136 0.864 24 H 0.206 0.794 25 H 0.184 0.816 26 H 0.158 0.842 27 H 0.075 0.925 28 H 0.092 0.908 29 H 0.006 0.994 30 H -0.005 1.005 31 H 0.072 0.928 32 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -14.100 12.154 -8.659 20.531 hybrid contribution 0.988 0.036 0.531 1.122 sum -13.113 12.189 -8.129 19.662 Atomic orbital electron populations 1.21015 0.84682 1.06005 1.04814 1.21178 0.97066 0.82994 1.02636 1.21165 0.94381 0.97779 1.02756 1.21461 0.94613 0.98361 0.98771 1.20737 1.00839 0.89665 1.01427 1.19608 0.83758 0.96557 1.12029 1.21274 0.95405 0.88581 1.09584 1.19759 0.87550 0.99613 0.98292 1.18818 0.94706 0.94253 0.91417 1.21713 0.99377 1.43756 0.93076 0.91594 1.26068 1.03274 0.95650 0.94970 1.70149 1.39423 1.50095 0.98099 0.85294 0.78416 0.77875 0.78807 1.18210 1.20005 1.20475 1.69796 0.98524 1.34956 1.17560 1.25410 1.00957 0.76947 1.10986 1.43025 1.06815 1.07574 1.46845 0.88949 0.90250 0.86449 0.79432 0.81563 0.84245 0.92538 0.90840 0.99395 1.00547 0.92771 0.73754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.21 9.86 71.24 0.70 -0.51 16 2 C 0.06 1.34 6.79 40.92 0.28 1.62 16 3 C -0.14 -2.60 9.57 22.08 0.21 -2.39 16 4 C -0.11 -2.54 10.07 22.35 0.23 -2.32 16 5 C -0.11 -3.45 10.10 22.39 0.23 -3.23 16 6 C -0.01 -0.42 6.74 38.76 0.26 -0.16 16 7 C -0.01 -0.65 6.46 42.26 0.27 -0.37 16 8 C -0.01 -0.67 5.71 29.85 0.17 -0.50 16 9 C 0.05 2.71 4.95 29.85 0.15 2.85 16 10 C -0.54 -32.83 9.11 25.60 0.23 -32.60 16 11 H 0.07 3.79 7.74 -2.91 -0.02 3.76 16 12 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 13 N -0.94 -60.23 13.29 21.45 0.28 -59.94 16 14 Si 0.97 45.96 29.54 68.60 2.03 47.98 16 15 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 16 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 17 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 18 N -0.49 -21.48 11.19 -186.14 -2.08 -23.56 16 19 C 0.13 4.32 12.12 180.15 2.18 6.50 16 20 N -0.37 -11.69 2.94 -338.17 -1.00 -12.68 16 21 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 22 H 0.08 0.83 7.51 -2.39 -0.02 0.81 16 23 H 0.12 0.62 8.07 -2.38 -0.02 0.60 16 24 H 0.19 1.68 8.06 -2.91 -0.02 1.66 16 25 H 0.17 2.58 8.06 -2.91 -0.02 2.56 16 26 H 0.14 4.49 8.06 -2.91 -0.02 4.46 16 27 H 0.06 2.78 8.14 -2.39 -0.02 2.76 16 28 H 0.07 3.31 8.14 -2.39 -0.02 3.29 16 29 H -0.01 -0.78 8.14 -2.38 -0.02 -0.80 16 30 H -0.02 -1.59 8.14 -2.39 -0.02 -1.61 16 31 H 0.26 15.73 8.31 -92.70 -0.77 14.96 16 32 H 0.25 5.31 7.77 -2.91 -0.02 5.29 16 Total: -1.00 -80.83 279.51 5.71 -75.12 By element: Atomic # 1 Polarization: 2.76 SS G_CDS: 1.10 Total: 3.86 kcal Atomic # 6 Polarization: -36.16 SS G_CDS: 5.38 Total: -30.78 kcal Atomic # 7 Polarization: -93.39 SS G_CDS: -2.79 Total: -96.18 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.98 kcal Total: -80.83 5.71 -75.12 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261234186.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.743 kcal (2) G-P(sol) polarization free energy of solvation -80.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds