Wall clock time and date at job start Mon Mar 30 2020 03:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.33400 * 126.26660 * 2 1 4 4 C 1.30903 * 109.86710 * 179.97438 * 3 2 1 5 5 N 1.35039 * 109.37494 * 359.97438 * 4 3 2 6 6 C 1.37054 * 133.11745 * 180.02562 * 5 4 3 7 7 C 1.34674 * 120.55640 * 179.72568 * 6 5 4 8 8 C 1.40811 * 120.61570 * 0.53565 * 7 6 5 9 9 C 1.50697 * 120.11207 * 179.71911 * 8 7 6 10 10 C 1.52996 * 109.47491 * 269.72700 * 9 8 7 11 11 C 1.50702 * 109.47159 * 179.97438 * 10 9 8 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99942 * 179.72211 * 11 10 9 14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 10 15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 10 16 16 H 1.48504 * 109.47196 * 60.00645 * 15 13 11 17 17 H 1.48504 * 109.46887 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47679 * 300.00280 * 15 13 11 19 19 C 1.35875 * 119.77246 * 359.45183 * 8 7 6 20 20 C 1.37989 * 126.27067 * 179.97438 * 2 1 3 21 21 H 1.08999 * 109.47095 * 270.00275 * 1 2 3 22 22 H 1.09000 * 109.46909 * 30.00394 * 1 2 3 23 23 H 1.08997 * 109.46978 * 150.00002 * 1 2 3 24 24 H 1.08005 * 125.31564 * 180.02562 * 4 3 2 25 25 H 1.07999 * 119.72844 * 359.97438 * 6 5 4 26 26 H 1.07998 * 119.69342 * 180.28451 * 7 6 5 27 27 H 1.09004 * 109.46801 * 149.72739 * 9 8 7 28 28 H 1.09000 * 109.47461 * 29.73271 * 9 8 7 29 29 H 1.09004 * 109.47066 * 60.00201 * 10 9 8 30 30 H 1.08994 * 109.47405 * 300.00031 * 10 9 8 31 31 H 0.97005 * 119.99651 * 179.97438 * 14 13 11 32 32 H 1.07998 * 120.41331 * 180.29366 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2961 1.0756 0.0000 4 6 3.5519 0.7060 0.0006 5 7 3.6220 -0.6426 0.0015 6 6 4.6697 -1.5261 0.0028 7 6 4.4454 -2.8541 0.0091 8 6 3.1312 -3.3594 0.0031 9 6 2.8933 -4.8475 0.0039 10 6 2.8133 -5.3520 -1.4383 11 6 2.5761 -6.8402 -1.4375 12 1 2.4905 -7.3729 -0.5019 13 6 2.4621 -7.5208 -2.6312 14 7 2.5660 -6.8721 -3.7705 15 14 2.1604 -9.3643 -2.6301 16 1 0.8854 -9.6568 -1.9273 17 1 2.0780 -9.8531 -4.0299 18 1 3.2786 -10.0486 -1.9324 19 6 2.0781 -2.5007 0.0022 20 6 2.3234 -1.1125 0.0005 21 1 -0.3633 0.0000 1.0277 22 1 -0.3633 0.8900 -0.5139 23 1 -0.3633 -0.8900 -0.5138 24 1 4.3997 1.3752 0.0011 25 1 5.6837 -1.1545 0.0028 26 1 5.2814 -3.5378 0.0147 27 1 1.9569 -5.0655 0.5175 28 1 3.7146 -5.3465 0.5183 29 1 3.7497 -5.1340 -1.9520 30 1 1.9921 -4.8531 -1.9527 31 1 2.4861 -7.3510 -4.6103 32 1 1.0658 -2.8770 0.0024 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261234900.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:41 Heat of formation + Delta-G solvation = 63.550984 kcal Electronic energy + Delta-G solvation = -15013.346605 eV Core-core repulsion = 12553.271612 eV Total energy + Delta-G solvation = -2460.074994 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.54430 -37.66933 -34.58427 -33.09448 -31.45689 -30.36344 -29.36630 -26.40209 -24.80974 -23.27351 -22.16065 -20.88570 -19.78963 -17.48092 -16.53747 -16.12646 -15.68950 -15.11160 -14.52789 -14.46900 -13.93127 -13.05099 -12.86283 -12.76483 -12.58979 -12.12475 -11.87485 -11.66531 -11.44961 -10.99426 -10.94168 -10.66834 -10.20136 -10.06113 -9.89775 -9.47779 -9.19322 -8.93949 -8.40723 -7.06742 -6.05362 -4.09276 1.08498 1.52879 2.83963 3.20638 3.29781 3.34799 3.36619 3.69911 4.41175 4.59609 4.64320 4.91151 5.09289 5.11913 5.30280 5.41155 5.53824 5.69769 5.82897 5.96228 6.07367 6.12859 6.21014 6.31221 6.52216 6.71553 6.81112 6.86018 7.01124 7.40068 7.59401 7.71218 7.92970 8.07636 8.32743 8.97356 9.55325 11.05495 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.042439 B = 0.005321 C = 0.005026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.605509 B = 5260.812460 C = 5569.762796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C -0.014 4.014 3 N -0.456 5.456 4 C 0.120 3.880 5 N -0.366 5.366 6 C 0.031 3.969 7 C -0.111 4.111 8 C -0.062 4.062 9 C -0.076 4.076 10 C 0.030 3.970 11 C -0.525 4.525 12 H 0.056 0.944 13 C 0.058 3.942 14 N -0.894 5.894 15 Si 0.893 3.107 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.277 1.277 19 C -0.091 4.091 20 C 0.020 3.980 21 H 0.065 0.935 22 H 0.068 0.932 23 H 0.070 0.930 24 H 0.205 0.795 25 H 0.162 0.838 26 H 0.148 0.852 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.017 0.983 30 H 0.018 0.982 31 H 0.262 0.738 32 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.227 10.730 7.957 13.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.149 4.149 3 N -0.170 5.170 4 C -0.154 4.154 5 N -0.037 5.037 6 C -0.089 4.089 7 C -0.132 4.132 8 C -0.065 4.065 9 C -0.113 4.113 10 C -0.007 4.007 11 C -0.563 4.563 12 H 0.074 0.926 13 C -0.143 4.143 14 N -0.533 5.533 15 Si 0.721 3.279 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.202 1.202 19 C -0.110 4.110 20 C -0.089 4.089 21 H 0.083 0.917 22 H 0.087 0.913 23 H 0.089 0.911 24 H 0.222 0.778 25 H 0.179 0.821 26 H 0.166 0.834 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.035 0.965 30 H 0.037 0.963 31 H 0.072 0.928 32 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 2.086 11.643 7.758 14.146 hybrid contribution 0.427 -1.784 -0.224 1.848 sum 2.513 9.859 7.534 12.660 Atomic orbital electron populations 1.19947 0.87156 1.02687 1.01934 1.20812 0.96120 0.86501 1.11498 1.69794 1.00224 1.30573 1.16452 1.24598 0.96950 0.80140 1.13681 1.42806 1.06879 1.07706 1.46326 1.21527 0.91559 0.89631 1.06148 1.20924 0.98507 0.93462 1.00291 1.20280 0.91791 0.98258 0.96140 1.20827 1.01393 0.87106 1.02020 1.19081 0.97537 0.95610 0.88478 1.21191 1.49729 0.93032 0.92373 0.92562 1.25023 0.95257 0.98426 0.95621 1.69961 1.49991 1.35995 0.97330 0.86642 0.78852 0.85412 0.77002 1.20166 1.21266 1.20211 1.20365 1.00481 0.88260 1.01923 1.19513 0.83923 0.95074 1.10409 0.91657 0.91302 0.91144 0.77819 0.82112 0.83420 0.91769 0.91860 0.96483 0.96335 0.92848 0.83910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.76 10.44 36.01 0.38 -0.39 16 2 C -0.01 -0.23 7.21 -82.00 -0.59 -0.82 16 3 N -0.46 -7.45 11.19 -10.18 -0.11 -7.56 16 4 C 0.12 1.70 12.75 -90.04 -1.15 0.55 16 5 N -0.37 -5.53 2.94 -62.43 -0.18 -5.71 16 6 C 0.03 0.40 10.97 -16.48 -0.18 0.22 16 7 C -0.11 -1.62 9.66 -39.87 -0.39 -2.01 16 8 C -0.06 -1.06 5.14 -104.50 -0.54 -1.60 16 9 C -0.08 -1.47 5.29 -27.89 -0.15 -1.62 16 10 C 0.03 0.75 4.96 -27.88 -0.14 0.61 16 11 C -0.53 -14.36 9.11 -34.44 -0.31 -14.67 16 12 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 13 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 14 N -0.89 -26.48 13.29 55.43 0.74 -25.75 16 15 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 16 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 17 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 19 C -0.09 -1.53 9.74 -39.39 -0.38 -1.91 16 20 C 0.02 0.34 6.74 -84.09 -0.57 -0.23 16 21 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 22 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 23 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.21 1.97 8.06 -52.48 -0.42 1.55 16 25 H 0.16 1.42 8.06 -52.49 -0.42 1.00 16 26 H 0.15 1.86 8.06 -52.49 -0.42 1.44 16 27 H 0.06 1.20 8.08 -51.93 -0.42 0.78 16 28 H 0.06 1.16 8.09 -51.93 -0.42 0.74 16 29 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 32 H 0.14 2.23 8.06 -52.49 -0.42 1.80 16 LS Contribution 280.91 15.07 4.23 4.23 Total: -1.00 -32.08 280.91 -8.65 -40.73 By element: Atomic # 1 Polarization: 2.43 SS G_CDS: -4.19 Total: -1.76 kcal Atomic # 6 Polarization: -16.21 SS G_CDS: -4.11 Total: -20.32 kcal Atomic # 7 Polarization: -39.46 SS G_CDS: 0.44 Total: -39.02 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -32.08 -8.65 -40.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261234900.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.281 kcal (2) G-P(sol) polarization free energy of solvation -32.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds