Wall clock time and date at job start Mon Mar 30 2020 03:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.33400 * 126.26660 * 2 1 4 4 C 1.30903 * 109.86710 * 179.97438 * 3 2 1 5 5 N 1.35039 * 109.37494 * 359.97438 * 4 3 2 6 6 C 1.37054 * 133.11745 * 180.02562 * 5 4 3 7 7 C 1.34674 * 120.55640 * 179.72568 * 6 5 4 8 8 C 1.40811 * 120.61570 * 0.53565 * 7 6 5 9 9 C 1.50697 * 120.11207 * 179.71911 * 8 7 6 10 10 C 1.52996 * 109.47491 * 269.72700 * 9 8 7 11 11 C 1.50702 * 109.47159 * 179.97438 * 10 9 8 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99942 * 179.72211 * 11 10 9 14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 10 15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 10 16 16 H 1.48504 * 109.47196 * 60.00645 * 15 13 11 17 17 H 1.48504 * 109.46887 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47679 * 300.00280 * 15 13 11 19 19 C 1.35875 * 119.77246 * 359.45183 * 8 7 6 20 20 C 1.37989 * 126.27067 * 179.97438 * 2 1 3 21 21 H 1.08999 * 109.47095 * 270.00275 * 1 2 3 22 22 H 1.09000 * 109.46909 * 30.00394 * 1 2 3 23 23 H 1.08997 * 109.46978 * 150.00002 * 1 2 3 24 24 H 1.08005 * 125.31564 * 180.02562 * 4 3 2 25 25 H 1.07999 * 119.72844 * 359.97438 * 6 5 4 26 26 H 1.07998 * 119.69342 * 180.28451 * 7 6 5 27 27 H 1.09004 * 109.46801 * 149.72739 * 9 8 7 28 28 H 1.09000 * 109.47461 * 29.73271 * 9 8 7 29 29 H 1.09004 * 109.47066 * 60.00201 * 10 9 8 30 30 H 1.08994 * 109.47405 * 300.00031 * 10 9 8 31 31 H 0.97005 * 119.99651 * 179.97438 * 14 13 11 32 32 H 1.07998 * 120.41331 * 180.29366 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2961 1.0756 0.0000 4 6 3.5519 0.7060 0.0006 5 7 3.6220 -0.6426 0.0015 6 6 4.6697 -1.5261 0.0028 7 6 4.4454 -2.8541 0.0091 8 6 3.1312 -3.3594 0.0031 9 6 2.8933 -4.8475 0.0039 10 6 2.8133 -5.3520 -1.4383 11 6 2.5761 -6.8402 -1.4375 12 1 2.4905 -7.3729 -0.5019 13 6 2.4621 -7.5208 -2.6312 14 7 2.5660 -6.8721 -3.7705 15 14 2.1604 -9.3643 -2.6301 16 1 0.8854 -9.6568 -1.9273 17 1 2.0780 -9.8531 -4.0299 18 1 3.2786 -10.0486 -1.9324 19 6 2.0781 -2.5007 0.0022 20 6 2.3234 -1.1125 0.0005 21 1 -0.3633 0.0000 1.0277 22 1 -0.3633 0.8900 -0.5139 23 1 -0.3633 -0.8900 -0.5138 24 1 4.3997 1.3752 0.0011 25 1 5.6837 -1.1545 0.0028 26 1 5.2814 -3.5378 0.0147 27 1 1.9569 -5.0655 0.5175 28 1 3.7146 -5.3465 0.5183 29 1 3.7497 -5.1340 -1.9520 30 1 1.9921 -4.8531 -1.9527 31 1 2.4861 -7.3510 -4.6103 32 1 1.0658 -2.8770 0.0024 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261234900.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:41 Heat of formation + Delta-G solvation = 47.021397 kcal Electronic energy + Delta-G solvation = -15014.063382 eV Core-core repulsion = 12553.271612 eV Total energy + Delta-G solvation = -2460.791770 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.68606 -38.89955 -36.08001 -34.82306 -32.97554 -31.55245 -30.76070 -27.92583 -26.29250 -24.57301 -23.58746 -22.30758 -21.10026 -18.63244 -18.51943 -17.40950 -16.85942 -16.52342 -16.28423 -15.61368 -15.15141 -14.48761 -14.44847 -14.06187 -13.94812 -13.60565 -13.19865 -13.07423 -12.86883 -12.68949 -12.39359 -12.35520 -11.79410 -11.69791 -11.29672 -11.18121 -11.01537 -10.54979 -10.14895 -8.27291 -8.16709 -6.31366 -0.07210 0.34857 1.42023 1.44560 1.52503 1.76266 2.07475 2.40499 2.50079 3.14122 3.57316 3.61078 3.85327 3.90515 3.95893 4.25085 4.44515 4.52808 4.75623 4.83838 4.84227 4.87138 4.98977 5.04401 5.11666 5.18357 5.44694 5.50034 5.59783 5.71928 5.80433 5.84219 6.22287 6.33671 6.85795 6.92108 7.38489 8.91885 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.042439 B = 0.005321 C = 0.005026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.605509 B = 5260.812460 C = 5569.762796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C -0.027 4.027 3 N -0.485 5.485 4 C 0.137 3.863 5 N -0.376 5.376 6 C 0.050 3.950 7 C -0.134 4.134 8 C -0.078 4.078 9 C -0.061 4.061 10 C 0.037 3.963 11 C -0.543 4.543 12 H 0.065 0.935 13 C 0.000 4.000 14 N -0.935 5.935 15 Si 0.965 3.035 16 H -0.267 1.267 17 H -0.286 1.286 18 H -0.265 1.265 19 C -0.102 4.102 20 C -0.010 4.010 21 H 0.078 0.922 22 H 0.075 0.925 23 H 0.072 0.928 24 H 0.250 0.750 25 H 0.211 0.789 26 H 0.166 0.834 27 H 0.065 0.935 28 H 0.074 0.926 29 H -0.007 1.007 30 H -0.014 1.014 31 H 0.263 0.737 32 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.318 11.051 8.939 14.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.161 4.161 3 N -0.200 5.200 4 C -0.137 4.137 5 N -0.048 5.048 6 C -0.069 4.069 7 C -0.154 4.154 8 C -0.081 4.081 9 C -0.098 4.098 10 C 0.000 4.000 11 C -0.581 4.581 12 H 0.083 0.917 13 C -0.197 4.197 14 N -0.575 5.575 15 Si 0.789 3.211 16 H -0.192 1.192 17 H -0.211 1.211 18 H -0.189 1.189 19 C -0.122 4.122 20 C -0.119 4.119 21 H 0.097 0.903 22 H 0.094 0.906 23 H 0.091 0.909 24 H 0.266 0.734 25 H 0.228 0.772 26 H 0.183 0.817 27 H 0.084 0.916 28 H 0.093 0.907 29 H 0.011 0.989 30 H 0.005 0.995 31 H 0.072 0.928 32 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 3.166 11.955 8.762 15.156 hybrid contribution 0.110 -1.746 -0.529 1.828 sum 3.276 10.209 8.233 13.518 Atomic orbital electron populations 1.20032 0.85688 1.03099 1.02938 1.21328 0.97451 0.86501 1.10827 1.69832 1.01385 1.30896 1.17919 1.25558 0.97580 0.80197 1.10387 1.43070 1.06783 1.08348 1.46569 1.22218 0.92951 0.88837 1.02900 1.21113 0.97762 0.94812 1.01742 1.20176 0.93465 0.96778 0.97706 1.20532 1.01983 0.89056 0.98247 1.18913 0.94849 0.94683 0.91585 1.21682 1.49172 0.94416 0.92828 0.91671 1.25979 0.94927 1.03635 0.95201 1.70106 1.51274 1.38080 0.98031 0.85507 0.79282 0.79204 0.77104 1.19170 1.21140 1.18928 1.20402 1.00527 0.88830 1.02431 1.19612 0.85202 0.94997 1.12054 0.90309 0.90649 0.90923 0.73431 0.77241 0.81656 0.91633 0.90720 0.98878 0.99533 0.92830 0.84105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.52 10.44 71.24 0.74 -0.78 16 2 C -0.03 -0.85 7.21 42.26 0.30 -0.55 16 3 N -0.49 -15.07 11.19 -186.13 -2.08 -17.16 16 4 C 0.14 3.47 12.75 180.15 2.30 5.77 16 5 N -0.38 -10.55 2.94 -351.44 -1.03 -11.58 16 6 C 0.05 1.15 10.97 83.06 0.91 2.06 16 7 C -0.13 -3.73 9.66 22.08 0.21 -3.51 16 8 C -0.08 -2.70 5.14 -19.78 -0.10 -2.81 16 9 C -0.06 -2.38 5.29 29.85 0.16 -2.23 16 10 C 0.04 1.90 4.96 29.85 0.15 2.04 16 11 C -0.54 -30.05 9.11 25.60 0.23 -29.82 16 12 H 0.07 3.40 7.74 -2.91 -0.02 3.38 16 13 C 0.00 0.02 5.46 84.66 0.46 0.48 16 14 N -0.93 -56.61 13.29 21.45 0.28 -56.33 16 15 Si 0.96 43.39 29.54 68.60 2.03 45.41 16 16 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 17 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 18 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 19 C -0.10 -3.51 9.74 22.39 0.22 -3.29 16 20 C -0.01 -0.32 6.74 38.77 0.26 -0.06 16 21 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 22 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 23 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 24 H 0.25 3.63 8.06 -2.91 -0.02 3.61 16 25 H 0.21 2.66 8.06 -2.91 -0.02 2.63 16 26 H 0.17 3.88 8.06 -2.91 -0.02 3.86 16 27 H 0.07 2.49 8.08 -2.38 -0.02 2.47 16 28 H 0.07 2.71 8.09 -2.39 -0.02 2.69 16 29 H -0.01 -0.40 8.14 -2.38 -0.02 -0.42 16 30 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 31 H 0.26 15.03 8.31 -92.70 -0.77 14.26 16 32 H 0.14 4.62 8.06 -2.91 -0.02 4.60 16 Total: -1.00 -70.38 280.91 6.14 -64.24 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: 1.10 Total: 8.10 kcal Atomic # 6 Polarization: -38.53 SS G_CDS: 5.85 Total: -32.68 kcal Atomic # 7 Polarization: -82.24 SS G_CDS: -2.83 Total: -85.07 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.41 kcal Total: -70.38 6.14 -64.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261234900.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.266 kcal (2) G-P(sol) polarization free energy of solvation -70.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds