Wall clock time and date at job start Mon Mar 30 2020 03:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30117 * 124.95033 * 2 1 4 4 C 1.35786 * 109.64357 * 180.02562 * 3 2 1 5 5 C 1.39734 * 133.59669 * 179.97438 * 4 3 2 6 6 C 1.36604 * 119.88478 * 180.02562 * 5 4 3 7 7 C 1.38782 * 120.66925 * 359.97438 * 6 5 4 8 8 C 1.37855 * 120.44765 * 0.24829 * 7 6 5 9 9 C 1.50706 * 120.15270 * 179.67594 * 8 7 6 10 10 C 1.50700 * 109.46686 * 264.84080 * 9 8 7 11 11 H 1.07994 * 120.00362 * 359.97438 * 10 9 8 12 12 C 1.37882 * 119.99680 * 179.97438 * 10 9 8 13 13 N 1.31516 * 120.00138 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 120.00040 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47189 * 89.99990 * 14 12 10 16 16 H 1.48498 * 109.47307 * 210.00136 * 14 12 10 17 17 H 1.48503 * 109.47002 * 330.00069 * 14 12 10 18 18 C 1.38833 * 119.69108 * 359.51403 * 8 7 6 19 19 N 1.36036 * 124.95210 * 180.02562 * 2 1 3 20 20 C 1.46495 * 126.34949 * 359.96330 * 19 2 1 21 21 H 1.09003 * 109.46815 * 269.95517 * 1 2 3 22 22 H 1.08992 * 109.47214 * 29.95450 * 1 2 3 23 23 H 1.08996 * 109.46826 * 149.95813 * 1 2 3 24 24 H 1.08000 * 120.05926 * 0.02562 * 5 4 3 25 25 H 1.08001 * 119.66680 * 180.02562 * 6 5 4 26 26 H 1.08000 * 119.77416 * 179.97438 * 7 6 5 27 27 H 1.09004 * 109.47199 * 24.84193 * 9 8 7 28 28 H 1.09003 * 109.47120 * 144.83989 * 9 8 7 29 29 H 0.96995 * 120.00242 * 180.02562 * 13 12 10 30 30 H 1.08999 * 109.47236 * 269.99938 * 20 19 2 31 31 H 1.09007 * 109.47363 * 30.00012 * 20 19 2 32 32 H 1.09006 * 109.47541 * 150.00130 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2524 1.0665 0.0000 4 6 3.5621 0.7080 -0.0006 5 6 4.7586 1.4297 -0.0013 6 6 5.9532 0.7671 -0.0023 7 6 5.9931 -0.6202 -0.0021 8 6 4.8253 -1.3527 -0.0060 9 6 4.8765 -2.8588 -0.0131 10 6 4.7664 -3.3584 -1.4306 11 1 4.6687 -2.6557 -2.2448 12 6 4.7904 -4.7128 -1.6880 13 7 4.9099 -5.5686 -0.6966 14 14 4.6533 -5.3322 -3.4450 15 1 6.0105 -5.4476 -4.0365 16 1 3.9959 -6.6637 -3.4506 17 1 3.8444 -4.3774 -4.2446 18 6 3.6019 -0.6964 0.0001 19 7 2.2863 -1.1150 -0.0005 20 6 1.8167 -2.5026 -0.0004 21 1 -0.3633 -0.0008 1.0277 22 1 -0.3633 0.8903 -0.5131 23 1 -0.3633 -0.8896 -0.5145 24 1 4.7391 2.5096 -0.0010 25 1 6.8759 1.3284 -0.0024 26 1 6.9456 -1.1292 -0.0033 27 1 5.8207 -3.1924 0.4175 28 1 4.0489 -3.2533 0.5765 29 1 4.9272 -6.5213 -0.8777 30 1 1.7008 -2.8469 1.0273 31 1 0.8569 -2.5615 -0.5137 32 1 2.5430 -3.1322 -0.5146 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261241511.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:36 Heat of formation + Delta-G solvation = 40.805467 kcal Electronic energy + Delta-G solvation = -15745.212033 eV Core-core repulsion = 13284.150720 eV Total energy + Delta-G solvation = -2461.061313 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.03388 -38.50757 -36.09639 -34.60670 -32.49496 -32.17126 -29.34903 -28.37908 -27.35023 -25.01018 -23.09714 -22.10266 -20.50447 -18.55099 -18.13922 -17.49784 -16.83932 -16.55848 -16.11432 -15.22677 -14.53437 -14.39653 -14.22818 -14.16629 -13.94950 -13.69952 -13.38572 -13.02799 -12.88120 -12.75988 -12.43613 -12.17539 -12.14626 -11.77489 -11.59240 -10.98596 -10.75498 -10.63006 -9.12405 -8.78571 -8.20787 -6.35884 0.16005 0.70583 1.36285 1.38505 1.48296 1.83884 1.89324 2.36697 3.03816 3.06960 3.31114 3.69812 4.01834 4.19695 4.25494 4.39227 4.46414 4.58018 4.59272 4.71303 4.80298 4.94163 5.00326 5.04452 5.21043 5.31124 5.45960 5.64498 5.69699 5.72369 5.93059 6.05997 6.18180 6.36849 6.74205 6.97965 7.32152 8.84936 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.024487 B = 0.009493 C = 0.007665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.172172 B = 2948.703223 C = 3652.190196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.267 3.733 3 N -0.532 5.532 4 C 0.021 3.979 5 C -0.103 4.103 6 C -0.109 4.109 7 C -0.135 4.135 8 C -0.055 4.055 9 C 0.061 3.939 10 C -0.519 4.519 11 H 0.042 0.958 12 C 0.019 3.981 13 N -0.920 5.920 14 Si 0.954 3.046 15 H -0.275 1.275 16 H -0.275 1.275 17 H -0.271 1.271 18 C 0.023 3.977 19 N -0.485 5.485 20 C 0.064 3.936 21 H 0.105 0.895 22 H 0.104 0.896 23 H 0.098 0.902 24 H 0.143 0.857 25 H 0.160 0.840 26 H 0.129 0.871 27 H 0.005 0.995 28 H 0.015 0.985 29 H 0.267 0.733 30 H 0.075 0.925 31 H 0.112 0.888 32 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.715 8.033 1.210 10.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.002 3.998 3 N -0.254 5.254 4 C -0.097 4.097 5 C -0.122 4.122 6 C -0.129 4.129 7 C -0.155 4.155 8 C -0.058 4.058 9 C 0.024 3.976 10 C -0.557 4.557 11 H 0.060 0.940 12 C -0.181 4.181 13 N -0.559 5.559 14 Si 0.779 3.221 15 H -0.201 1.201 16 H -0.201 1.201 17 H -0.196 1.196 18 C -0.086 4.086 19 N -0.174 5.174 20 C -0.077 4.077 21 H 0.123 0.877 22 H 0.122 0.878 23 H 0.116 0.884 24 H 0.161 0.839 25 H 0.178 0.822 26 H 0.147 0.853 27 H 0.023 0.977 28 H 0.033 0.967 29 H 0.076 0.924 30 H 0.093 0.907 31 H 0.131 0.869 32 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.052 8.509 1.254 11.123 hybrid contribution 0.563 -1.623 -0.728 1.866 sum -6.489 6.886 0.526 9.477 Atomic orbital electron populations 1.20554 0.80855 1.05796 1.05518 1.24574 0.97557 0.80256 0.97405 1.70328 1.00897 1.28429 1.25767 1.19494 0.93031 0.90649 1.06553 1.20118 0.88867 1.00059 1.03198 1.20889 0.98287 0.93386 1.00376 1.20992 0.96849 0.94546 1.03140 1.19586 0.90323 0.97296 0.98590 1.18136 0.96410 0.86565 0.96492 1.21112 1.50784 0.91523 0.92299 0.93993 1.25715 0.94553 0.96863 1.00933 1.70046 1.50335 1.02646 1.32860 0.85609 0.78544 0.77804 0.80097 1.20101 1.20055 1.19613 1.18995 0.86076 0.94999 1.08499 1.45244 1.04354 1.08461 1.59295 1.22389 1.02854 0.78605 1.03856 0.87687 0.87780 0.88358 0.83945 0.82224 0.85340 0.97683 0.96731 0.92397 0.90658 0.86920 0.89396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.41 10.17 71.24 0.72 -0.68 16 2 C 0.27 9.09 7.85 137.92 1.08 10.17 16 3 N -0.53 -20.86 11.27 -179.97 -2.03 -22.88 16 4 C 0.02 0.88 7.23 39.45 0.29 1.16 16 5 C -0.10 -3.68 10.05 22.25 0.22 -3.45 16 6 C -0.11 -3.68 9.96 22.02 0.22 -3.46 16 7 C -0.14 -5.47 9.67 22.31 0.22 -5.25 16 8 C -0.06 -2.58 5.08 -19.81 -0.10 -2.68 16 9 C 0.06 3.17 4.43 29.10 0.13 3.30 16 10 C -0.52 -28.51 7.67 25.60 0.20 -28.31 16 11 H 0.04 2.37 7.74 -2.91 -0.02 2.35 16 12 C 0.02 1.02 5.46 84.66 0.46 1.49 16 13 N -0.92 -52.12 13.29 21.45 0.28 -51.83 16 14 Si 0.95 42.66 29.54 68.60 2.03 44.69 16 15 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 16 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 17 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 18 C 0.02 1.03 6.77 38.86 0.26 1.29 16 19 N -0.48 -18.81 3.21 -528.83 -1.70 -20.50 16 20 C 0.06 2.20 9.79 127.77 1.25 3.45 16 21 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 22 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 23 H 0.10 1.59 7.01 -2.39 -0.02 1.57 16 24 H 0.14 4.24 8.06 -2.91 -0.02 4.22 16 25 H 0.16 3.96 8.06 -2.91 -0.02 3.93 16 26 H 0.13 4.89 8.06 -2.91 -0.02 4.86 16 27 H 0.00 0.27 8.05 -2.38 -0.02 0.25 16 28 H 0.01 0.78 6.07 -2.39 -0.01 0.77 16 29 H 0.27 14.23 8.31 -92.71 -0.77 13.46 16 30 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 31 H 0.11 2.86 7.00 -2.38 -0.02 2.85 16 32 H 0.09 3.81 4.82 -2.38 -0.01 3.80 16 Total: -1.00 -67.99 270.36 4.66 -63.33 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: 1.12 Total: 10.18 kcal Atomic # 6 Polarization: -27.93 SS G_CDS: 4.95 Total: -22.98 kcal Atomic # 7 Polarization: -91.78 SS G_CDS: -3.44 Total: -95.22 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Total: -67.99 4.66 -63.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261241511.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.139 kcal (2) G-P(sol) polarization free energy of solvation -67.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds