Wall clock time and date at job start Mon Mar 30 2020 03:24:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50700 * 1
3 3 N 1.30117 * 124.95033 * 2 1
4 4 C 1.35786 * 109.64357 * 180.02562 * 3 2 1
5 5 C 1.39734 * 133.59669 * 179.97438 * 4 3 2
6 6 C 1.36604 * 119.88478 * 180.02562 * 5 4 3
7 7 C 1.38782 * 120.66925 * 359.97438 * 6 5 4
8 8 C 1.37855 * 120.44765 * 0.24829 * 7 6 5
9 9 C 1.50706 * 120.15270 * 179.67594 * 8 7 6
10 10 C 1.50700 * 109.46686 * 264.84080 * 9 8 7
11 11 H 1.07994 * 120.00362 * 359.97438 * 10 9 8
12 12 C 1.37882 * 119.99680 * 179.97438 * 10 9 8
13 13 N 1.31516 * 120.00138 * 359.97438 * 12 10 9
14 14 Si 1.86798 * 120.00040 * 179.97438 * 12 10 9
15 15 H 1.48501 * 109.47189 * 89.99990 * 14 12 10
16 16 H 1.48498 * 109.47307 * 210.00136 * 14 12 10
17 17 H 1.48503 * 109.47002 * 330.00069 * 14 12 10
18 18 C 1.38833 * 119.69108 * 359.51403 * 8 7 6
19 19 N 1.36036 * 124.95210 * 180.02562 * 2 1 3
20 20 C 1.46495 * 126.34949 * 359.96330 * 19 2 1
21 21 H 1.09003 * 109.46815 * 269.95517 * 1 2 3
22 22 H 1.08992 * 109.47214 * 29.95450 * 1 2 3
23 23 H 1.08996 * 109.46826 * 149.95813 * 1 2 3
24 24 H 1.08000 * 120.05926 * 0.02562 * 5 4 3
25 25 H 1.08001 * 119.66680 * 180.02562 * 6 5 4
26 26 H 1.08000 * 119.77416 * 179.97438 * 7 6 5
27 27 H 1.09004 * 109.47199 * 24.84193 * 9 8 7
28 28 H 1.09003 * 109.47120 * 144.83989 * 9 8 7
29 29 H 0.96995 * 120.00242 * 180.02562 * 13 12 10
30 30 H 1.08999 * 109.47236 * 269.99938 * 20 19 2
31 31 H 1.09007 * 109.47363 * 30.00012 * 20 19 2
32 32 H 1.09006 * 109.47541 * 150.00130 * 20 19 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2524 1.0665 0.0000
4 6 3.5621 0.7080 -0.0006
5 6 4.7586 1.4297 -0.0013
6 6 5.9532 0.7671 -0.0023
7 6 5.9931 -0.6202 -0.0021
8 6 4.8253 -1.3527 -0.0060
9 6 4.8765 -2.8588 -0.0131
10 6 4.7664 -3.3584 -1.4306
11 1 4.6687 -2.6557 -2.2448
12 6 4.7904 -4.7128 -1.6880
13 7 4.9099 -5.5686 -0.6966
14 14 4.6533 -5.3322 -3.4450
15 1 6.0105 -5.4476 -4.0365
16 1 3.9959 -6.6637 -3.4506
17 1 3.8444 -4.3774 -4.2446
18 6 3.6019 -0.6964 0.0001
19 7 2.2863 -1.1150 -0.0005
20 6 1.8167 -2.5026 -0.0004
21 1 -0.3633 -0.0008 1.0277
22 1 -0.3633 0.8903 -0.5131
23 1 -0.3633 -0.8896 -0.5145
24 1 4.7391 2.5096 -0.0010
25 1 6.8759 1.3284 -0.0024
26 1 6.9456 -1.1292 -0.0033
27 1 5.8207 -3.1924 0.4175
28 1 4.0489 -3.2533 0.5765
29 1 4.9272 -6.5213 -0.8777
30 1 1.7008 -2.8469 1.0273
31 1 0.8569 -2.5615 -0.5137
32 1 2.5430 -3.1322 -0.5146
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000261241511.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:24:36
Heat of formation + Delta-G solvation = 40.805467 kcal
Electronic energy + Delta-G solvation = -15745.212033 eV
Core-core repulsion = 13284.150720 eV
Total energy + Delta-G solvation = -2461.061313 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 230.111 amu
Computer time = 0.25 seconds
Orbital eigenvalues (eV)
-43.03388 -38.50757 -36.09639 -34.60670 -32.49496 -32.17126 -29.34903 -28.37908
-27.35023 -25.01018 -23.09714 -22.10266 -20.50447 -18.55099 -18.13922 -17.49784
-16.83932 -16.55848 -16.11432 -15.22677 -14.53437 -14.39653 -14.22818 -14.16629
-13.94950 -13.69952 -13.38572 -13.02799 -12.88120 -12.75988 -12.43613 -12.17539
-12.14626 -11.77489 -11.59240 -10.98596 -10.75498 -10.63006 -9.12405 -8.78571
-8.20787 -6.35884 0.16005 0.70583 1.36285 1.38505 1.48296 1.83884
1.89324 2.36697 3.03816 3.06960 3.31114 3.69812 4.01834 4.19695
4.25494 4.39227 4.46414 4.58018 4.59272 4.71303 4.80298 4.94163
5.00326 5.04452 5.21043 5.31124 5.45960 5.64498 5.69699 5.72369
5.93059 6.05997 6.18180 6.36849 6.74205 6.97965 7.32152 8.84936
Molecular weight = 230.11amu
Principal moments of inertia in cm(-1)
A = 0.024487 B = 0.009493 C = 0.007665
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1143.172172 B = 2948.703223 C = 3652.190196
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.069 4.069
2 C 0.267 3.733
3 N -0.532 5.532
4 C 0.021 3.979
5 C -0.103 4.103
6 C -0.109 4.109
7 C -0.135 4.135
8 C -0.055 4.055
9 C 0.061 3.939
10 C -0.519 4.519
11 H 0.042 0.958
12 C 0.019 3.981
13 N -0.920 5.920
14 Si 0.954 3.046
15 H -0.275 1.275
16 H -0.275 1.275
17 H -0.271 1.271
18 C 0.023 3.977
19 N -0.485 5.485
20 C 0.064 3.936
21 H 0.105 0.895
22 H 0.104 0.896
23 H 0.098 0.902
24 H 0.143 0.857
25 H 0.160 0.840
26 H 0.129 0.871
27 H 0.005 0.995
28 H 0.015 0.985
29 H 0.267 0.733
30 H 0.075 0.925
31 H 0.112 0.888
32 H 0.087 0.913
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.715 8.033 1.210 10.540
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.127 4.127
2 C 0.002 3.998
3 N -0.254 5.254
4 C -0.097 4.097
5 C -0.122 4.122
6 C -0.129 4.129
7 C -0.155 4.155
8 C -0.058 4.058
9 C 0.024 3.976
10 C -0.557 4.557
11 H 0.060 0.940
12 C -0.181 4.181
13 N -0.559 5.559
14 Si 0.779 3.221
15 H -0.201 1.201
16 H -0.201 1.201
17 H -0.196 1.196
18 C -0.086 4.086
19 N -0.174 5.174
20 C -0.077 4.077
21 H 0.123 0.877
22 H 0.122 0.878
23 H 0.116 0.884
24 H 0.161 0.839
25 H 0.178 0.822
26 H 0.147 0.853
27 H 0.023 0.977
28 H 0.033 0.967
29 H 0.076 0.924
30 H 0.093 0.907
31 H 0.131 0.869
32 H 0.106 0.894
Dipole moment (debyes) X Y Z Total
from point charges -7.052 8.509 1.254 11.123
hybrid contribution 0.563 -1.623 -0.728 1.866
sum -6.489 6.886 0.526 9.477
Atomic orbital electron populations
1.20554 0.80855 1.05796 1.05518 1.24574 0.97557 0.80256 0.97405
1.70328 1.00897 1.28429 1.25767 1.19494 0.93031 0.90649 1.06553
1.20118 0.88867 1.00059 1.03198 1.20889 0.98287 0.93386 1.00376
1.20992 0.96849 0.94546 1.03140 1.19586 0.90323 0.97296 0.98590
1.18136 0.96410 0.86565 0.96492 1.21112 1.50784 0.91523 0.92299
0.93993 1.25715 0.94553 0.96863 1.00933 1.70046 1.50335 1.02646
1.32860 0.85609 0.78544 0.77804 0.80097 1.20101 1.20055 1.19613
1.18995 0.86076 0.94999 1.08499 1.45244 1.04354 1.08461 1.59295
1.22389 1.02854 0.78605 1.03856 0.87687 0.87780 0.88358 0.83945
0.82224 0.85340 0.97683 0.96731 0.92397 0.90658 0.86920 0.89396
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -1.41 10.17 71.24 0.72 -0.68 16
2 C 0.27 9.09 7.85 137.92 1.08 10.17 16
3 N -0.53 -20.86 11.27 -179.97 -2.03 -22.88 16
4 C 0.02 0.88 7.23 39.45 0.29 1.16 16
5 C -0.10 -3.68 10.05 22.25 0.22 -3.45 16
6 C -0.11 -3.68 9.96 22.02 0.22 -3.46 16
7 C -0.14 -5.47 9.67 22.31 0.22 -5.25 16
8 C -0.06 -2.58 5.08 -19.81 -0.10 -2.68 16
9 C 0.06 3.17 4.43 29.10 0.13 3.30 16
10 C -0.52 -28.51 7.67 25.60 0.20 -28.31 16
11 H 0.04 2.37 7.74 -2.91 -0.02 2.35 16
12 C 0.02 1.02 5.46 84.66 0.46 1.49 16
13 N -0.92 -52.12 13.29 21.45 0.28 -51.83 16
14 Si 0.95 42.66 29.54 68.60 2.03 44.69 16
15 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16
16 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16
17 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16
18 C 0.02 1.03 6.77 38.86 0.26 1.29 16
19 N -0.48 -18.81 3.21 -528.83 -1.70 -20.50 16
20 C 0.06 2.20 9.79 127.77 1.25 3.45 16
21 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16
22 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16
23 H 0.10 1.59 7.01 -2.39 -0.02 1.57 16
24 H 0.14 4.24 8.06 -2.91 -0.02 4.22 16
25 H 0.16 3.96 8.06 -2.91 -0.02 3.93 16
26 H 0.13 4.89 8.06 -2.91 -0.02 4.86 16
27 H 0.00 0.27 8.05 -2.38 -0.02 0.25 16
28 H 0.01 0.78 6.07 -2.39 -0.01 0.77 16
29 H 0.27 14.23 8.31 -92.71 -0.77 13.46 16
30 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16
31 H 0.11 2.86 7.00 -2.38 -0.02 2.85 16
32 H 0.09 3.81 4.82 -2.38 -0.01 3.80 16
Total: -1.00 -67.99 270.36 4.66 -63.33
By element:
Atomic # 1 Polarization: 9.06 SS G_CDS: 1.12 Total: 10.18 kcal
Atomic # 6 Polarization: -27.93 SS G_CDS: 4.95 Total: -22.98 kcal
Atomic # 7 Polarization: -91.78 SS G_CDS: -3.44 Total: -95.22 kcal
Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal
Total: -67.99 4.66 -63.33 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000261241511.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 104.139 kcal
(2) G-P(sol) polarization free energy of solvation -67.993 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.146 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.660 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.334 kcal
(6) G-S(sol) free energy of system = (1) + (5) 40.805 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.25 seconds