Wall clock time and date at job start Mon Mar 30 2020 03:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86803 * 119.99857 * 2 1 4 4 H 1.48492 * 109.47178 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47034 * 119.99482 * 3 2 1 6 6 H 1.48503 * 109.46675 * 239.99626 * 3 2 1 7 7 C 1.37872 * 120.00137 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00277 * 178.95428 * 7 2 1 9 9 C 1.50708 * 119.99927 * 358.96073 * 7 2 1 10 10 H 1.09005 * 109.46678 * 327.70152 * 9 7 2 11 11 C 1.52991 * 109.47140 * 207.70053 * 9 7 2 12 12 N 1.46906 * 109.47169 * 65.33760 * 11 9 7 13 13 C 1.50700 * 109.47107 * 87.69677 * 9 7 2 14 14 C 1.34240 * 125.02983 * 84.69959 * 13 9 7 15 15 C 1.46497 * 106.99356 * 179.85727 * 14 13 9 16 16 C 1.39618 * 134.03039 * 180.11139 * 15 14 13 17 17 C 1.36629 * 119.76284 * 180.35488 * 16 15 14 18 18 C 1.38831 * 120.52801 * 359.96242 * 17 16 15 19 19 C 1.37742 * 120.66444 * 0.02562 * 18 17 16 20 20 C 1.39122 * 119.78213 * 0.02562 * 19 18 17 21 21 N 1.36831 * 125.03419 * 264.99901 * 13 9 7 22 22 H 0.97001 * 125.06376 * 0.02562 * 21 13 9 23 23 H 0.96994 * 119.99609 * 174.62390 * 1 2 3 24 24 H 1.09000 * 109.47430 * 185.33703 * 11 9 7 25 25 H 1.08996 * 109.47371 * 305.33946 * 11 9 7 26 26 H 1.00899 * 110.99772 * 62.36320 * 12 11 9 27 27 H 1.00900 * 110.99711 * 186.31176 * 12 11 9 28 28 H 1.07991 * 126.50450 * 359.97438 * 14 13 9 29 29 H 1.08001 * 120.11937 * 0.33799 * 16 15 14 30 30 H 1.08001 * 119.73580 * 179.97438 * 17 16 15 31 31 H 1.08001 * 119.66359 * 180.02562 * 18 17 16 32 32 H 1.08002 * 120.10893 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 1.2842 2.7464 -0.0006 5 1 3.1028 1.6965 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0844 -1.1941 -0.0165 9 6 1.2513 -2.4991 0.0248 10 1 0.3260 -2.3740 0.5874 11 6 2.1128 -3.5729 0.6921 12 7 2.3209 -3.2260 2.1044 13 6 0.9284 -2.9190 -1.3860 14 6 1.7558 -3.5978 -2.1964 15 6 1.0466 -3.7975 -3.4626 16 6 1.3716 -4.4203 -4.6691 17 6 0.4666 -4.4300 -5.6927 18 6 -0.7743 -3.8259 -5.5427 19 6 -1.1155 -3.2060 -4.3609 20 6 -0.2091 -3.1832 -3.3057 21 7 -0.2493 -2.6599 -2.0327 22 1 -1.0001 -2.1785 -1.6515 23 1 -0.4849 -0.8363 -0.0787 24 1 1.6084 -4.5368 0.6253 25 1 3.0767 -3.6314 0.1866 26 1 1.4445 -3.2034 2.6040 27 1 2.9698 -3.8632 2.5413 28 1 2.7541 -3.9345 -1.9593 29 1 2.3349 -4.8926 -4.7930 30 1 0.7186 -4.9116 -6.6260 31 1 -1.4792 -3.8421 -6.3608 32 1 -2.0836 -2.7392 -4.2537 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261243091.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:11 Heat of formation + Delta-G solvation = 43.520010 kcal Electronic energy + Delta-G solvation = -15533.481651 eV Core-core repulsion = 13072.538049 eV Total energy + Delta-G solvation = -2460.943602 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.57279 -36.82300 -34.96166 -32.58020 -31.32981 -29.57312 -28.68116 -26.54433 -24.00558 -22.35510 -21.13257 -20.86128 -19.19200 -17.18187 -16.83743 -15.76739 -15.12531 -14.31113 -14.02990 -13.81537 -13.62795 -13.58625 -13.36754 -12.95375 -12.31096 -11.76858 -11.51281 -11.37000 -11.08435 -10.93612 -10.70597 -10.32781 -10.16023 -9.78101 -9.19205 -8.82643 -8.49433 -7.88843 -7.47433 -6.94184 -6.46074 -4.14372 1.71139 2.17459 3.42325 3.44133 3.60715 3.63402 3.88959 4.45513 4.49486 5.13119 5.26136 5.40654 5.42344 5.54877 5.87866 5.92423 5.92811 6.03430 6.11936 6.40341 6.47991 6.58933 6.60467 6.67695 6.91659 7.03255 7.10524 7.39543 7.63428 7.78561 7.91167 8.04877 8.08897 8.31005 8.37617 8.75021 9.50628 10.89872 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.025573 B = 0.008533 C = 0.007273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.632071 B = 3280.640095 C = 3848.719781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.018 3.982 3 Si 1.069 2.931 4 H -0.284 1.284 5 H -0.285 1.285 6 H -0.288 1.288 7 C -0.546 4.546 8 H 0.058 0.942 9 C 0.075 3.925 10 H 0.041 0.959 11 C 0.091 3.909 12 N -0.831 5.831 13 C 0.151 3.849 14 C -0.251 4.251 15 C -0.094 4.094 16 C -0.084 4.084 17 C -0.156 4.156 18 C -0.122 4.122 19 C -0.127 4.127 20 C 0.083 3.917 21 N -0.586 5.586 22 H 0.412 0.588 23 H 0.259 0.741 24 H 0.002 0.998 25 H 0.064 0.936 26 H 0.332 0.668 27 H 0.326 0.674 28 H 0.134 0.866 29 H 0.113 0.887 30 H 0.112 0.888 31 H 0.115 0.885 32 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.199 -7.674 -4.518 8.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.185 4.185 3 Si 0.897 3.103 4 H -0.210 1.210 5 H -0.211 1.211 6 H -0.215 1.215 7 C -0.584 4.584 8 H 0.076 0.924 9 C 0.055 3.945 10 H 0.059 0.941 11 C -0.041 4.041 12 N -0.359 5.359 13 C 0.040 3.960 14 C -0.274 4.274 15 C -0.100 4.100 16 C -0.103 4.103 17 C -0.175 4.175 18 C -0.142 4.142 19 C -0.148 4.148 20 C -0.024 4.024 21 N -0.188 5.188 22 H 0.249 0.751 23 H 0.070 0.930 24 H 0.020 0.980 25 H 0.083 0.917 26 H 0.144 0.856 27 H 0.137 0.863 28 H 0.152 0.848 29 H 0.131 0.869 30 H 0.130 0.870 31 H 0.133 0.867 32 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -0.183 -5.262 -4.648 7.023 hybrid contribution -0.566 -2.275 0.118 2.347 sum -0.749 -7.537 -4.530 8.825 Atomic orbital electron populations 1.70933 1.06877 1.29781 1.47239 1.25880 0.96440 1.02881 0.93266 0.83516 0.74955 0.75080 0.76699 1.20958 1.21121 1.21467 1.21681 0.94329 0.89594 1.52759 0.92417 1.17806 0.96598 0.95215 0.84864 0.94119 1.21606 0.99536 0.94050 0.88867 1.58408 1.16462 1.58016 1.03000 1.21802 0.83735 0.92639 0.97825 1.21129 1.00610 1.12927 0.92779 1.19309 0.94164 1.01439 0.95059 1.20160 0.98931 0.99335 0.91850 1.20437 0.94717 1.03657 0.98730 1.20566 0.97005 1.00188 0.96402 1.19964 0.98452 1.04060 0.92318 1.18318 0.96863 1.00272 0.86994 1.42047 1.16340 1.49471 1.10951 0.75080 0.92967 0.97992 0.91720 0.85574 0.86319 0.84827 0.86907 0.87008 0.86713 0.87028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.79 13.59 55.43 0.75 -25.03 16 2 C 0.02 0.50 5.46 -17.82 -0.10 0.40 16 3 Si 1.07 25.08 29.90 -169.99 -5.08 20.00 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.55 -14.53 8.03 -34.44 -0.28 -14.81 16 8 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 9 C 0.08 1.76 2.09 -92.92 -0.19 1.56 16 10 H 0.04 1.01 6.76 -51.93 -0.35 0.66 16 11 C 0.09 1.81 5.59 -3.83 -0.02 1.78 16 12 N -0.83 -15.25 9.32 -10.37 -0.10 -15.34 16 13 C 0.15 3.41 5.96 -81.77 -0.49 2.92 16 14 C -0.25 -5.41 10.19 -37.67 -0.38 -5.79 16 15 C -0.09 -1.94 6.37 -105.14 -0.67 -2.61 16 16 C -0.08 -1.47 10.05 -39.65 -0.40 -1.87 16 17 C -0.16 -2.42 9.97 -39.94 -0.40 -2.82 16 18 C -0.12 -1.90 10.01 -39.54 -0.40 -2.29 16 19 C -0.13 -2.22 10.08 -39.43 -0.40 -2.62 16 20 C 0.08 1.70 7.28 -83.99 -0.61 1.09 16 21 N -0.59 -12.61 6.00 -6.95 -0.04 -12.65 16 22 H 0.41 8.54 7.98 -40.82 -0.33 8.21 16 23 H 0.26 7.06 5.62 -40.82 -0.23 6.83 16 24 H 0.00 0.04 8.14 -51.93 -0.42 -0.39 16 25 H 0.06 1.30 7.46 -51.93 -0.39 0.91 16 26 H 0.33 5.79 9.06 -39.29 -0.36 5.43 16 27 H 0.33 4.88 9.08 -39.29 -0.36 4.52 16 28 H 0.13 2.68 7.43 -52.49 -0.39 2.29 16 29 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 30 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 31 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 32 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 LS Contribution 272.79 15.07 4.11 4.11 Total: -1.00 -29.91 272.79 -8.41 -38.32 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: -3.72 Total: 15.65 kcal Atomic # 6 Polarization: -20.72 SS G_CDS: -4.33 Total: -25.05 kcal Atomic # 7 Polarization: -53.64 SS G_CDS: 0.62 Total: -53.02 kcal Atomic # 14 Polarization: 25.08 SS G_CDS: -5.08 Total: 20.00 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -29.91 -8.41 -38.32 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261243091.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.837 kcal (2) G-P(sol) polarization free energy of solvation -29.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds