Wall clock time and date at job start Mon Mar 30 2020 03:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86803 * 119.99857 * 2 1 4 4 H 1.48492 * 109.47178 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47034 * 119.99482 * 3 2 1 6 6 H 1.48503 * 109.46675 * 239.99626 * 3 2 1 7 7 C 1.37872 * 120.00137 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00277 * 178.95428 * 7 2 1 9 9 C 1.50708 * 119.99927 * 358.96073 * 7 2 1 10 10 H 1.09005 * 109.46678 * 327.70152 * 9 7 2 11 11 C 1.52991 * 109.47140 * 207.70053 * 9 7 2 12 12 N 1.46906 * 109.47169 * 65.33760 * 11 9 7 13 13 C 1.50700 * 109.47107 * 87.69677 * 9 7 2 14 14 C 1.34240 * 125.02983 * 84.69959 * 13 9 7 15 15 C 1.46497 * 106.99356 * 179.85727 * 14 13 9 16 16 C 1.39618 * 134.03039 * 180.11139 * 15 14 13 17 17 C 1.36629 * 119.76284 * 180.35488 * 16 15 14 18 18 C 1.38831 * 120.52801 * 359.96242 * 17 16 15 19 19 C 1.37742 * 120.66444 * 0.02562 * 18 17 16 20 20 C 1.39122 * 119.78213 * 0.02562 * 19 18 17 21 21 N 1.36831 * 125.03419 * 264.99901 * 13 9 7 22 22 H 0.97001 * 125.06376 * 0.02562 * 21 13 9 23 23 H 0.96994 * 119.99609 * 174.62390 * 1 2 3 24 24 H 1.09000 * 109.47430 * 185.33703 * 11 9 7 25 25 H 1.08996 * 109.47371 * 305.33946 * 11 9 7 26 26 H 1.00899 * 110.99772 * 62.36320 * 12 11 9 27 27 H 1.00900 * 110.99711 * 186.31176 * 12 11 9 28 28 H 1.07991 * 126.50450 * 359.97438 * 14 13 9 29 29 H 1.08001 * 120.11937 * 0.33799 * 16 15 14 30 30 H 1.08001 * 119.73580 * 179.97438 * 17 16 15 31 31 H 1.08001 * 119.66359 * 180.02562 * 18 17 16 32 32 H 1.08002 * 120.10893 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 1.2842 2.7464 -0.0006 5 1 3.1028 1.6965 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0844 -1.1941 -0.0165 9 6 1.2513 -2.4991 0.0248 10 1 0.3260 -2.3740 0.5874 11 6 2.1128 -3.5729 0.6921 12 7 2.3209 -3.2260 2.1044 13 6 0.9284 -2.9190 -1.3860 14 6 1.7558 -3.5978 -2.1964 15 6 1.0466 -3.7975 -3.4626 16 6 1.3716 -4.4203 -4.6691 17 6 0.4666 -4.4300 -5.6927 18 6 -0.7743 -3.8259 -5.5427 19 6 -1.1155 -3.2060 -4.3609 20 6 -0.2091 -3.1832 -3.3057 21 7 -0.2493 -2.6599 -2.0327 22 1 -1.0001 -2.1785 -1.6515 23 1 -0.4849 -0.8363 -0.0787 24 1 1.6084 -4.5368 0.6253 25 1 3.0767 -3.6314 0.1866 26 1 1.4445 -3.2034 2.6040 27 1 2.9698 -3.8632 2.5413 28 1 2.7541 -3.9345 -1.9593 29 1 2.3349 -4.8926 -4.7930 30 1 0.7186 -4.9116 -6.6260 31 1 -1.4792 -3.8421 -6.3608 32 1 -2.0836 -2.7392 -4.2537 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261243091.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:11 Heat of formation + Delta-G solvation = 24.110509 kcal Electronic energy + Delta-G solvation = -15534.323310 eV Core-core repulsion = 13072.538049 eV Total energy + Delta-G solvation = -2461.785261 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.08778 -38.31111 -36.57073 -34.45572 -32.78475 -31.19575 -30.11775 -28.15809 -25.93763 -23.86437 -22.66490 -22.29563 -20.89042 -18.92962 -18.47643 -17.24806 -16.53189 -15.98005 -15.73829 -15.52641 -15.22750 -15.09320 -14.74279 -14.49630 -13.79934 -13.55434 -13.14948 -13.08328 -12.59084 -12.43760 -12.33928 -12.00445 -11.68146 -11.59479 -10.92156 -10.54282 -10.48041 -9.38837 -8.95517 -8.60372 -8.44953 -6.25392 0.32512 0.81008 1.52628 1.58860 1.77531 1.97058 2.34369 2.57628 3.07723 3.20543 3.82267 3.89639 4.18329 4.24386 4.27775 4.44012 4.51413 4.59039 4.64093 4.80419 4.96638 5.04111 5.11741 5.22997 5.32947 5.63839 5.75365 5.95395 6.01617 6.06257 6.27165 6.38443 6.40085 6.59510 6.74761 6.82513 7.45411 8.80635 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.025573 B = 0.008533 C = 0.007273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.632071 B = 3280.640095 C = 3848.719781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.029 4.029 3 Si 1.107 2.893 4 H -0.287 1.287 5 H -0.271 1.271 6 H -0.281 1.281 7 C -0.551 4.551 8 H 0.044 0.956 9 C 0.078 3.922 10 H 0.018 0.982 11 C 0.100 3.900 12 N -0.842 5.842 13 C 0.121 3.879 14 C -0.254 4.254 15 C -0.126 4.126 16 C -0.092 4.092 17 C -0.148 4.148 18 C -0.108 4.108 19 C -0.144 4.144 20 C 0.059 3.941 21 N -0.594 5.594 22 H 0.409 0.591 23 H 0.255 0.745 24 H 0.016 0.984 25 H 0.062 0.938 26 H 0.337 0.663 27 H 0.346 0.654 28 H 0.141 0.859 29 H 0.134 0.866 30 H 0.152 0.848 31 H 0.155 0.845 32 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.077 -8.628 -6.510 10.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.226 4.226 3 Si 0.931 3.069 4 H -0.213 1.213 5 H -0.197 1.197 6 H -0.207 1.207 7 C -0.589 4.589 8 H 0.062 0.938 9 C 0.058 3.942 10 H 0.036 0.964 11 C -0.032 4.032 12 N -0.372 5.372 13 C 0.011 3.989 14 C -0.278 4.278 15 C -0.131 4.131 16 C -0.110 4.110 17 C -0.167 4.167 18 C -0.127 4.127 19 C -0.164 4.164 20 C -0.047 4.047 21 N -0.196 5.196 22 H 0.245 0.755 23 H 0.066 0.934 24 H 0.034 0.966 25 H 0.081 0.919 26 H 0.149 0.851 27 H 0.160 0.840 28 H 0.158 0.842 29 H 0.152 0.848 30 H 0.170 0.830 31 H 0.172 0.828 32 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 0.108 -6.248 -6.634 9.114 hybrid contribution -0.683 -2.103 0.594 2.290 sum -0.574 -8.352 -6.040 10.323 Atomic orbital electron populations 1.70985 1.07486 1.29755 1.49301 1.26953 0.96714 1.05781 0.93188 0.83023 0.74236 0.72196 0.77444 1.21295 1.19653 1.20703 1.21871 0.93787 0.91240 1.52046 0.93781 1.17704 0.95666 0.95170 0.85679 0.96439 1.21428 0.98770 0.93534 0.89438 1.58330 1.17345 1.59023 1.02493 1.21570 0.84965 0.94779 0.97566 1.21340 1.00682 1.12268 0.93474 1.19592 0.94326 1.03220 0.95934 1.20523 1.00478 0.98888 0.91113 1.20947 0.93948 1.02301 0.99506 1.21116 0.97629 0.97615 0.96331 1.20343 0.98865 1.04857 0.92361 1.18796 0.97963 1.00891 0.87088 1.42029 1.16026 1.49885 1.11654 0.75474 0.93377 0.96573 0.91948 0.85054 0.84040 0.84151 0.84823 0.83010 0.82756 0.85467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.44 13.59 21.45 0.29 -54.15 16 2 C -0.03 -1.60 5.46 84.65 0.46 -1.14 16 3 Si 1.11 51.09 29.90 68.60 2.05 53.14 16 4 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 5 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 6 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 7 C -0.55 -30.02 8.03 25.60 0.21 -29.82 16 8 H 0.04 2.46 7.81 -2.91 -0.02 2.44 16 9 C 0.08 3.75 2.09 -12.29 -0.03 3.72 16 10 H 0.02 0.91 6.76 -2.38 -0.02 0.90 16 11 C 0.10 4.00 5.59 86.30 0.48 4.48 16 12 N -0.84 -30.69 9.32 -186.72 -1.74 -32.43 16 13 C 0.12 5.65 5.96 40.87 0.24 5.89 16 14 C -0.25 -11.04 10.19 23.51 0.24 -10.80 16 15 C -0.13 -5.07 6.37 -20.20 -0.13 -5.20 16 16 C -0.09 -2.95 10.05 22.23 0.22 -2.73 16 17 C -0.15 -3.94 9.97 22.04 0.22 -3.72 16 18 C -0.11 -2.91 10.01 22.29 0.22 -2.68 16 19 C -0.14 -4.74 10.08 22.36 0.23 -4.52 16 20 C 0.06 2.41 7.28 39.03 0.28 2.69 16 21 N -0.59 -26.30 6.00 -175.91 -1.05 -27.36 16 22 H 0.41 17.80 7.98 -92.71 -0.74 17.06 16 23 H 0.26 14.51 5.62 -92.71 -0.52 13.98 16 24 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 25 H 0.06 2.51 7.46 -2.39 -0.02 2.49 16 26 H 0.34 11.77 9.06 -89.69 -0.81 10.96 16 27 H 0.35 10.03 9.08 -89.69 -0.81 9.22 16 28 H 0.14 5.67 7.43 -2.92 -0.02 5.64 16 29 H 0.13 3.63 8.06 -2.91 -0.02 3.61 16 30 H 0.15 2.86 8.06 -2.91 -0.02 2.84 16 31 H 0.15 2.94 8.06 -2.91 -0.02 2.92 16 32 H 0.13 3.69 8.06 -2.91 -0.02 3.67 16 Total: -1.00 -64.99 272.79 1.25 -63.74 By element: Atomic # 1 Polarization: 41.82 SS G_CDS: -0.96 Total: 40.86 kcal Atomic # 6 Polarization: -46.46 SS G_CDS: 2.65 Total: -43.81 kcal Atomic # 7 Polarization: -111.44 SS G_CDS: -2.50 Total: -113.94 kcal Atomic # 14 Polarization: 51.09 SS G_CDS: 2.05 Total: 53.14 kcal Total: -64.99 1.25 -63.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261243091.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.852 kcal (2) G-P(sol) polarization free energy of solvation -64.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds