Wall clock time and date at job start Mon Mar 30 2020 03:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86808 * 119.99522 * 2 1 4 4 H 1.48498 * 109.46986 * 89.99760 * 3 2 1 5 5 H 1.48496 * 109.47115 * 329.99326 * 3 2 1 6 6 H 1.48497 * 109.46765 * 209.99396 * 3 2 1 7 7 C 1.37875 * 120.00664 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99543 * 7.23554 * 7 2 1 9 9 C 1.50700 * 120.00278 * 187.24320 * 7 2 1 10 10 H 1.08992 * 109.46935 * 304.76072 * 9 7 2 11 11 C 1.52997 * 109.46954 * 64.76397 * 9 7 2 12 12 N 1.46907 * 109.46697 * 184.90014 * 11 9 7 13 13 C 1.50700 * 109.46870 * 184.76009 * 9 7 2 14 14 C 1.38828 * 119.73994 * 299.99921 * 13 9 7 15 15 C 1.37748 * 120.66588 * 179.97438 * 14 13 9 16 16 C 1.39121 * 119.77634 * 0.02562 * 15 14 13 17 17 N 1.37695 * 133.50168 * 179.97438 * 16 15 14 18 18 H 0.97002 * 125.05952 * 0.02562 * 17 16 15 19 19 C 1.36826 * 109.87310 * 179.97438 * 17 16 15 20 20 C 1.34235 * 109.93197 * 0.02562 * 19 17 16 21 21 C 1.40664 * 119.34010 * 359.97438 * 16 15 14 22 22 C 1.36633 * 119.73091 * 119.72733 * 13 9 7 23 23 H 0.97003 * 119.99562 * 174.93915 * 1 2 3 24 24 H 1.08998 * 109.47395 * 304.89744 * 11 9 7 25 25 H 1.09005 * 109.47600 * 64.90320 * 11 9 7 26 26 H 1.00905 * 110.99487 * 180.02562 * 12 11 9 27 27 H 1.00898 * 111.00296 * 303.95260 * 12 11 9 28 28 H 1.07996 * 119.66720 * 359.97438 * 14 13 9 29 29 H 1.07998 * 120.10976 * 180.02562 * 15 14 13 30 30 H 1.08006 * 125.03322 * 179.97438 * 19 17 16 31 31 H 1.08000 * 126.50118 * 179.97438 * 20 19 17 32 32 H 1.08003 * 120.11489 * 0.02562 * 22 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4964 2.0466 1.4001 5 1 1.4465 2.6527 -0.7002 6 1 3.5466 1.4403 -0.6999 7 6 2.0046 -1.1940 0.0005 8 1 1.4711 -2.1257 -0.1169 9 6 3.5026 -1.1990 0.1651 10 1 3.9538 -0.5626 -0.5961 11 6 3.8649 -0.6686 1.5537 12 7 5.3254 -0.5629 1.6717 13 6 4.0197 -2.6064 0.0143 14 6 3.5805 -3.5981 0.8809 15 6 4.0402 -4.8909 0.7601 16 6 4.9544 -5.2085 -0.2393 17 7 5.5861 -6.3744 -0.6104 18 1 5.4679 -7.2343 -0.1775 19 6 6.4045 -6.1394 -1.6814 20 6 6.3359 -4.8462 -2.0347 21 6 5.3964 -4.2002 -1.1149 22 6 4.9130 -2.8975 -0.9778 23 1 -0.4849 -0.8368 -0.0741 24 1 3.4168 0.3149 1.6953 25 1 3.4875 -1.3527 2.3139 26 1 5.5903 -0.2149 2.5810 27 1 5.7687 -1.4490 1.4808 28 1 2.8711 -3.3534 1.6577 29 1 3.6922 -5.6554 1.4389 30 1 7.0159 -6.8839 -2.1697 31 1 6.8718 -4.3719 -2.8436 32 1 5.2472 -2.1217 -1.6508 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261244844.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:11 Heat of formation + Delta-G solvation = 49.906705 kcal Electronic energy + Delta-G solvation = -15539.976148 eV Core-core repulsion = 13079.309494 eV Total energy + Delta-G solvation = -2460.666654 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.78903 -37.45558 -34.47108 -32.36609 -31.52129 -30.08632 -28.33193 -27.18992 -23.12966 -22.33282 -21.86833 -20.50528 -19.05201 -17.72819 -17.27881 -15.59685 -15.30426 -14.81565 -14.07103 -13.89149 -13.52842 -13.46535 -13.18115 -12.78760 -12.52351 -12.12346 -11.95170 -11.45930 -10.94674 -10.53421 -10.49940 -10.33580 -9.75569 -9.65505 -9.32955 -8.73056 -8.37650 -7.95742 -7.59867 -7.24031 -6.37940 -4.06682 1.62863 2.24433 3.04343 3.41070 3.43734 3.54031 3.69976 4.51057 4.52409 5.03754 5.20424 5.26997 5.49663 5.50990 5.71143 5.78993 5.96128 6.12319 6.19394 6.38522 6.42726 6.51359 6.66323 6.88504 7.07863 7.12597 7.17605 7.23058 7.66642 7.68488 7.80413 7.83791 8.06042 8.21057 8.41130 8.92907 9.63459 10.98897 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.037259 B = 0.007438 C = 0.007173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.314473 B = 3763.784392 C = 3902.726837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.027 3.973 3 Si 1.054 2.946 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.272 1.272 7 C -0.584 4.584 8 H 0.059 0.941 9 C 0.051 3.949 10 H 0.044 0.956 11 C 0.061 3.939 12 N -0.855 5.855 13 C -0.052 4.052 14 C -0.080 4.080 15 C -0.144 4.144 16 C 0.077 3.923 17 N -0.603 5.603 18 H 0.408 0.592 19 C 0.034 3.966 20 C -0.205 4.205 21 C -0.108 4.108 22 C -0.082 4.082 23 H 0.266 0.734 24 H 0.064 0.936 25 H 0.020 0.980 26 H 0.325 0.675 27 H 0.334 0.666 28 H 0.123 0.877 29 H 0.109 0.891 30 H 0.162 0.838 31 H 0.140 0.860 32 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.288 -10.198 0.566 15.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.177 4.177 3 Si 0.884 3.116 4 H -0.213 1.213 5 H -0.219 1.219 6 H -0.197 1.197 7 C -0.623 4.623 8 H 0.077 0.923 9 C 0.031 3.969 10 H 0.062 0.938 11 C -0.069 4.069 12 N -0.383 5.383 13 C -0.053 4.053 14 C -0.100 4.100 15 C -0.165 4.165 16 C -0.029 4.029 17 N -0.207 5.207 18 H 0.244 0.756 19 C -0.091 4.091 20 C -0.231 4.231 21 C -0.112 4.112 22 C -0.101 4.101 23 H 0.077 0.923 24 H 0.082 0.918 25 H 0.039 0.961 26 H 0.135 0.865 27 H 0.146 0.854 28 H 0.141 0.859 29 H 0.127 0.873 30 H 0.180 0.820 31 H 0.158 0.842 32 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 12.014 -8.142 0.056 14.514 hybrid contribution -0.100 -2.956 0.903 3.092 sum 11.914 -11.098 0.959 16.310 Atomic orbital electron populations 1.70829 1.06793 1.30602 1.46464 1.25826 0.96304 1.02484 0.93073 0.83863 0.75450 0.75321 0.77001 1.21296 1.21899 1.19699 1.22036 0.90058 0.95294 1.54875 0.92292 1.18346 0.97036 0.88578 0.92932 0.93836 1.22364 0.85478 0.99916 0.99121 1.58937 1.10186 1.34053 1.35164 1.19748 0.94259 0.97358 0.93918 1.20817 0.98412 0.91215 0.99507 1.19942 1.00281 0.97236 0.99013 1.18198 0.99334 0.86108 0.99235 1.41675 1.39928 1.09485 1.29578 0.75607 1.21630 0.97988 0.97710 0.91815 1.21664 1.04794 0.93384 1.03267 1.19200 1.00656 0.93614 0.97774 1.20227 0.97463 0.93912 0.98516 0.92340 0.91774 0.96143 0.86494 0.85442 0.85901 0.87278 0.82042 0.84196 0.86518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.09 13.70 55.43 0.76 -27.33 16 2 C 0.03 0.79 5.42 -17.82 -0.10 0.69 16 3 Si 1.05 25.98 25.39 -169.99 -4.32 21.67 16 4 H -0.29 -6.72 6.73 56.52 0.38 -6.34 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.27 -6.40 6.38 56.52 0.36 -6.04 16 7 C -0.58 -16.28 8.61 -34.44 -0.30 -16.58 16 8 H 0.06 1.78 7.77 -52.48 -0.41 1.37 16 9 C 0.05 1.20 1.72 -92.93 -0.16 1.04 16 10 H 0.04 1.09 6.33 -51.93 -0.33 0.76 16 11 C 0.06 1.33 5.74 -3.82 -0.02 1.31 16 12 N -0.86 -15.68 9.62 -10.37 -0.10 -15.78 16 13 C -0.05 -1.10 3.74 -104.98 -0.39 -1.49 16 14 C -0.08 -1.59 8.56 -39.54 -0.34 -1.93 16 15 C -0.14 -2.48 10.08 -39.43 -0.40 -2.87 16 16 C 0.08 1.29 7.28 -83.99 -0.61 0.67 16 17 N -0.60 -7.75 6.07 -10.65 -0.06 -7.81 16 18 H 0.41 3.84 8.96 -40.82 -0.37 3.47 16 19 C 0.03 0.41 11.81 -16.73 -0.20 0.22 16 20 C -0.21 -3.01 11.08 -37.67 -0.42 -3.42 16 21 C -0.11 -1.95 6.37 -105.14 -0.67 -2.62 16 22 C -0.08 -1.64 9.66 -39.64 -0.38 -2.02 16 23 H 0.27 8.18 8.72 -40.82 -0.36 7.83 16 24 H 0.06 1.48 4.42 -51.93 -0.23 1.25 16 25 H 0.02 0.44 7.20 -51.93 -0.37 0.06 16 26 H 0.32 5.06 9.08 -39.29 -0.36 4.70 16 27 H 0.33 5.85 8.07 -39.29 -0.32 5.53 16 28 H 0.12 2.48 7.51 -52.49 -0.39 2.08 16 29 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 30 H 0.16 1.26 8.06 -52.48 -0.42 0.84 16 31 H 0.14 1.76 8.06 -52.49 -0.42 1.33 16 32 H 0.12 2.24 7.91 -52.48 -0.42 1.83 16 LS Contribution 265.21 15.07 4.00 4.00 Total: -1.00 -31.88 265.21 -7.38 -39.26 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: -3.67 Total: 13.01 kcal Atomic # 6 Polarization: -23.03 SS G_CDS: -3.98 Total: -27.01 kcal Atomic # 7 Polarization: -51.52 SS G_CDS: 0.59 Total: -50.92 kcal Atomic # 14 Polarization: 25.98 SS G_CDS: -4.32 Total: 21.67 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -31.88 -7.38 -39.26 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261244844.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.167 kcal (2) G-P(sol) polarization free energy of solvation -31.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds