Wall clock time and date at job start Mon Mar 30 2020 03:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86808 * 119.99522 * 2 1 4 4 H 1.48498 * 109.46986 * 89.99760 * 3 2 1 5 5 H 1.48496 * 109.47115 * 329.99326 * 3 2 1 6 6 H 1.48497 * 109.46765 * 209.99396 * 3 2 1 7 7 C 1.37875 * 120.00664 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99543 * 7.23554 * 7 2 1 9 9 C 1.50700 * 120.00278 * 187.24320 * 7 2 1 10 10 H 1.08992 * 109.46935 * 304.76072 * 9 7 2 11 11 C 1.52997 * 109.46954 * 64.76397 * 9 7 2 12 12 N 1.46907 * 109.46697 * 184.90014 * 11 9 7 13 13 C 1.50700 * 109.46870 * 184.76009 * 9 7 2 14 14 C 1.38828 * 119.73994 * 299.99921 * 13 9 7 15 15 C 1.37748 * 120.66588 * 179.97438 * 14 13 9 16 16 C 1.39121 * 119.77634 * 0.02562 * 15 14 13 17 17 N 1.37695 * 133.50168 * 179.97438 * 16 15 14 18 18 H 0.97002 * 125.05952 * 0.02562 * 17 16 15 19 19 C 1.36826 * 109.87310 * 179.97438 * 17 16 15 20 20 C 1.34235 * 109.93197 * 0.02562 * 19 17 16 21 21 C 1.40664 * 119.34010 * 359.97438 * 16 15 14 22 22 C 1.36633 * 119.73091 * 119.72733 * 13 9 7 23 23 H 0.97003 * 119.99562 * 174.93915 * 1 2 3 24 24 H 1.08998 * 109.47395 * 304.89744 * 11 9 7 25 25 H 1.09005 * 109.47600 * 64.90320 * 11 9 7 26 26 H 1.00905 * 110.99487 * 180.02562 * 12 11 9 27 27 H 1.00898 * 111.00296 * 303.95260 * 12 11 9 28 28 H 1.07996 * 119.66720 * 359.97438 * 14 13 9 29 29 H 1.07998 * 120.10976 * 180.02562 * 15 14 13 30 30 H 1.08006 * 125.03322 * 179.97438 * 19 17 16 31 31 H 1.08000 * 126.50118 * 179.97438 * 20 19 17 32 32 H 1.08003 * 120.11489 * 0.02562 * 22 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4964 2.0466 1.4001 5 1 1.4465 2.6527 -0.7002 6 1 3.5466 1.4403 -0.6999 7 6 2.0046 -1.1940 0.0005 8 1 1.4711 -2.1257 -0.1169 9 6 3.5026 -1.1990 0.1651 10 1 3.9538 -0.5626 -0.5961 11 6 3.8649 -0.6686 1.5537 12 7 5.3254 -0.5629 1.6717 13 6 4.0197 -2.6064 0.0143 14 6 3.5805 -3.5981 0.8809 15 6 4.0402 -4.8909 0.7601 16 6 4.9544 -5.2085 -0.2393 17 7 5.5861 -6.3744 -0.6104 18 1 5.4679 -7.2343 -0.1775 19 6 6.4045 -6.1394 -1.6814 20 6 6.3359 -4.8462 -2.0347 21 6 5.3964 -4.2002 -1.1149 22 6 4.9130 -2.8975 -0.9778 23 1 -0.4849 -0.8368 -0.0741 24 1 3.4168 0.3149 1.6953 25 1 3.4875 -1.3527 2.3139 26 1 5.5903 -0.2149 2.5810 27 1 5.7687 -1.4490 1.4808 28 1 2.8711 -3.3534 1.6577 29 1 3.6922 -5.6554 1.4389 30 1 7.0159 -6.8839 -2.1697 31 1 6.8718 -4.3719 -2.8436 32 1 5.2472 -2.1217 -1.6508 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261244844.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:11 Heat of formation + Delta-G solvation = 26.510747 kcal Electronic energy + Delta-G solvation = -15540.990673 eV Core-core repulsion = 13079.309494 eV Total energy + Delta-G solvation = -2461.681179 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.01735 -38.98917 -36.09011 -34.43499 -32.81432 -31.70285 -29.59284 -28.81110 -25.12014 -23.77556 -23.36941 -21.67643 -20.68577 -19.56029 -18.75273 -17.05357 -16.82991 -16.45519 -15.58125 -15.27209 -15.18074 -14.90365 -14.70976 -14.38602 -13.92884 -13.71117 -13.36034 -13.20183 -12.87317 -12.29691 -12.10707 -11.83223 -11.60187 -11.46956 -10.88053 -10.60793 -10.55130 -9.52097 -9.02023 -8.68484 -8.46076 -6.37328 0.29885 0.79886 1.44763 1.54922 1.75458 1.91808 2.35462 2.46502 3.03346 3.11185 3.85385 3.92521 4.07192 4.20219 4.34198 4.49203 4.58872 4.63006 4.66281 4.84996 5.01389 5.13926 5.15902 5.25897 5.40969 5.64107 5.79309 5.90085 5.93597 6.05385 6.09883 6.33255 6.37611 6.58706 6.74394 6.83793 7.40842 8.66861 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.037259 B = 0.007438 C = 0.007173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.314473 B = 3763.784392 C = 3902.726837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.022 4.022 3 Si 1.092 2.908 4 H -0.265 1.265 5 H -0.292 1.292 6 H -0.256 1.256 7 C -0.579 4.579 8 H 0.021 0.979 9 C 0.054 3.946 10 H 0.030 0.970 11 C 0.071 3.929 12 N -0.848 5.848 13 C -0.074 4.074 14 C -0.108 4.108 15 C -0.130 4.130 16 C 0.066 3.934 17 N -0.588 5.588 18 H 0.429 0.571 19 C 0.070 3.930 20 C -0.239 4.239 21 C -0.126 4.126 22 C -0.097 4.097 23 H 0.251 0.749 24 H 0.052 0.948 25 H 0.018 0.982 26 H 0.344 0.656 27 H 0.341 0.659 28 H 0.106 0.894 29 H 0.138 0.862 30 H 0.216 0.784 31 H 0.156 0.844 32 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.212 -12.065 0.427 19.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.219 4.219 3 Si 0.916 3.084 4 H -0.190 1.190 5 H -0.219 1.219 6 H -0.181 1.181 7 C -0.617 4.617 8 H 0.039 0.961 9 C 0.035 3.965 10 H 0.048 0.952 11 C -0.059 4.059 12 N -0.379 5.379 13 C -0.075 4.075 14 C -0.127 4.127 15 C -0.151 4.151 16 C -0.041 4.041 17 N -0.193 5.193 18 H 0.268 0.732 19 C -0.056 4.056 20 C -0.263 4.263 21 C -0.131 4.131 22 C -0.116 4.116 23 H 0.060 0.940 24 H 0.070 0.930 25 H 0.036 0.964 26 H 0.157 0.843 27 H 0.153 0.847 28 H 0.125 0.875 29 H 0.156 0.844 30 H 0.233 0.767 31 H 0.174 0.826 32 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 14.962 -10.057 -0.057 18.028 hybrid contribution -0.918 -2.621 0.880 2.914 sum 14.044 -12.678 0.823 18.937 Atomic orbital electron populations 1.70946 1.07966 1.29676 1.49552 1.27131 0.96264 1.06025 0.92515 0.83388 0.74905 0.71796 0.78357 1.19050 1.21940 1.18064 1.22205 0.92643 0.93596 1.53296 0.96076 1.18156 0.93961 0.90656 0.93766 0.95170 1.22013 0.87567 0.98810 0.97534 1.58781 1.07858 1.34577 1.36653 1.19528 0.96036 0.96259 0.95720 1.20689 0.99599 0.92529 0.99871 1.20119 0.99254 0.96591 0.99088 1.18257 0.99452 0.87539 0.98878 1.41758 1.38818 1.09230 1.29470 0.73207 1.22442 0.95731 0.97725 0.89708 1.21970 1.05586 0.94548 1.04232 1.19569 1.01326 0.93136 0.99023 1.20221 0.97949 0.95194 0.98231 0.93974 0.92999 0.96411 0.84314 0.84657 0.87542 0.84419 0.76701 0.82616 0.86990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.57 13.70 21.45 0.29 -60.27 16 2 C -0.02 -1.33 5.42 84.65 0.46 -0.87 16 3 Si 1.09 53.10 25.39 68.60 1.74 54.84 16 4 H -0.26 -11.91 6.73 99.48 0.67 -11.24 16 5 H -0.29 -14.15 7.11 99.48 0.71 -13.45 16 6 H -0.26 -11.71 6.38 99.48 0.63 -11.08 16 7 C -0.58 -33.78 8.61 25.60 0.22 -33.56 16 8 H 0.02 1.35 7.77 -2.91 -0.02 1.33 16 9 C 0.05 2.64 1.72 -12.29 -0.02 2.62 16 10 H 0.03 1.54 6.33 -2.39 -0.02 1.53 16 11 C 0.07 3.11 5.74 86.30 0.50 3.60 16 12 N -0.85 -30.16 9.62 -186.71 -1.80 -31.95 16 13 C -0.07 -3.24 3.74 -20.10 -0.08 -3.32 16 14 C -0.11 -4.35 8.56 22.29 0.19 -4.16 16 15 C -0.13 -4.31 10.08 22.37 0.23 -4.09 16 16 C 0.07 2.04 7.28 39.03 0.28 2.32 16 17 N -0.59 -12.44 6.07 -187.61 -1.14 -13.58 16 18 H 0.43 5.83 8.96 -92.71 -0.83 5.00 16 19 C 0.07 1.32 11.81 83.00 0.98 2.30 16 20 C -0.24 -6.21 11.08 23.51 0.26 -5.95 16 21 C -0.13 -4.35 6.37 -20.20 -0.13 -4.48 16 22 C -0.10 -3.90 9.66 22.23 0.21 -3.68 16 23 H 0.25 16.34 8.72 -92.71 -0.81 15.53 16 24 H 0.05 2.38 4.42 -2.39 -0.01 2.36 16 25 H 0.02 0.77 7.20 -2.38 -0.02 0.75 16 26 H 0.34 10.08 9.08 -89.69 -0.81 9.26 16 27 H 0.34 11.62 8.07 -89.70 -0.72 10.90 16 28 H 0.11 4.52 7.51 -2.91 -0.02 4.50 16 29 H 0.14 3.65 8.06 -2.91 -0.02 3.63 16 30 H 0.22 1.74 8.06 -2.91 -0.02 1.72 16 31 H 0.16 3.44 8.06 -2.91 -0.02 3.42 16 32 H 0.11 4.41 7.91 -2.91 -0.02 4.39 16 Total: -1.00 -72.52 265.21 0.86 -71.66 By element: Atomic # 1 Polarization: 29.91 SS G_CDS: -1.35 Total: 28.56 kcal Atomic # 6 Polarization: -52.36 SS G_CDS: 3.11 Total: -49.26 kcal Atomic # 7 Polarization: -103.16 SS G_CDS: -2.64 Total: -105.81 kcal Atomic # 14 Polarization: 53.10 SS G_CDS: 1.74 Total: 54.84 kcal Total: -72.52 0.86 -71.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261244844.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.167 kcal (2) G-P(sol) polarization free energy of solvation -72.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds