Wall clock time and date at job start Mon Mar 30 2020 03:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.33517 * 125.68399 * 2 1 4 4 C 1.32557 * 109.15560 * 180.02562 * 3 2 1 5 5 C 1.40935 * 132.32547 * 180.02562 * 4 3 2 6 6 C 1.36014 * 119.32951 * 179.97438 * 5 4 3 7 7 C 1.40470 * 119.69479 * 0.02562 * 6 5 4 8 8 C 1.50708 * 119.85317 * 180.02562 * 7 6 5 9 9 C 1.50701 * 109.46886 * 269.96262 * 8 7 6 10 10 H 1.07994 * 120.00137 * 0.02562 * 9 8 7 11 11 C 1.37880 * 119.99602 * 179.97438 * 9 8 7 12 12 N 1.31512 * 119.99877 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 119.99978 * 180.02562 * 11 9 8 14 14 H 1.48493 * 109.47295 * 90.00158 * 13 11 9 15 15 H 1.48508 * 109.47011 * 210.00295 * 13 11 9 16 16 H 1.48503 * 109.47153 * 330.00197 * 13 11 9 17 17 C 1.34952 * 120.29684 * 359.97438 * 7 6 5 18 18 N 1.36479 * 120.61524 * 359.97438 * 17 7 6 19 19 C 1.35098 * 125.68831 * 180.02562 * 2 1 3 20 20 C 1.50698 * 126.40982 * 0.03101 * 19 2 1 21 21 H 1.09001 * 109.47109 * 269.99687 * 1 2 3 22 22 H 1.09003 * 109.46749 * 29.99767 * 1 2 3 23 23 H 1.08999 * 109.46605 * 149.99453 * 1 2 3 24 24 H 1.08009 * 120.33574 * 359.69368 * 5 4 3 25 25 H 1.08001 * 120.15923 * 179.97438 * 6 5 4 26 26 H 1.08996 * 109.46867 * 29.96282 * 8 7 6 27 27 H 1.08996 * 109.46801 * 149.96117 * 8 7 6 28 28 H 0.97003 * 119.99964 * 179.97438 * 12 11 9 29 29 H 1.08008 * 119.69533 * 180.02562 * 17 7 6 30 30 H 1.09003 * 109.47389 * 269.95909 * 20 19 2 31 31 H 1.08999 * 109.47408 * 29.96043 * 20 19 2 32 32 H 1.08997 * 109.47381 * 149.96492 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2859 1.0845 0.0000 4 6 3.5567 0.7074 -0.0006 5 6 4.7629 1.4363 -0.0003 6 6 5.9464 0.7661 -0.0006 7 6 5.9506 -0.6386 -0.0015 8 6 7.2599 -1.3849 -0.0012 9 6 7.6968 -1.6335 -1.4219 10 1 7.0875 -1.2855 -2.2429 11 6 8.8748 -2.3043 -1.6735 12 7 9.6169 -2.7276 -0.6737 13 14 9.4168 -2.6118 -3.4345 14 1 10.2533 -1.4768 -3.9004 15 1 10.2070 -3.8676 -3.4971 16 1 8.2208 -2.7356 -4.3060 17 6 4.7874 -1.3229 -0.0017 18 7 3.5928 -0.6630 -0.0005 19 6 2.2952 -1.0973 -0.0005 20 6 1.8320 -2.5313 -0.0018 21 1 -0.3633 -0.0001 1.0277 22 1 -0.3633 0.8900 -0.5138 23 1 -0.3632 -0.8900 -0.5139 24 1 4.7476 2.5163 -0.0046 25 1 6.8787 1.3112 -0.0008 26 1 8.0160 -0.7917 0.5130 27 1 7.1346 -2.3381 0.5125 28 1 10.4455 -3.1998 -0.8507 29 1 4.8020 -2.4029 -0.0021 30 1 1.7205 -2.8781 1.0256 31 1 0.8733 -2.6030 -0.5155 32 1 2.5671 -3.1501 -0.5163 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261248644.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:04 Heat of formation + Delta-G solvation = 64.372931 kcal Electronic energy + Delta-G solvation = -15234.541443 eV Core-core repulsion = 12774.502092 eV Total energy + Delta-G solvation = -2460.039351 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.37283 -37.43383 -33.58941 -33.43596 -32.04768 -30.43357 -28.87793 -26.57486 -25.72825 -23.31152 -21.91276 -21.26015 -19.56008 -16.83036 -16.48072 -16.25317 -15.66304 -14.87418 -14.27621 -14.17052 -13.31533 -13.16427 -12.84409 -12.80088 -12.49952 -12.43032 -12.03924 -11.76384 -11.59674 -11.13670 -10.90503 -10.71400 -10.62611 -10.37904 -9.85641 -9.65544 -9.49283 -8.55974 -7.93955 -7.22450 -6.17916 -4.23334 1.33162 1.80867 3.08196 3.19736 3.22744 3.29794 3.33843 4.05905 4.35076 4.56398 4.89976 5.13253 5.17610 5.23831 5.44224 5.46438 5.56975 5.62134 5.68320 5.76626 5.89852 5.95715 6.01431 6.31247 6.46466 6.64225 6.77207 7.03348 7.07873 7.33381 7.49516 7.63138 7.76905 8.12478 8.29314 8.81433 9.42004 10.91516 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.038142 B = 0.006192 C = 0.005842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.919117 B = 4520.687213 C = 4792.025442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.046 3.954 3 N -0.507 5.507 4 C 0.220 3.780 5 C -0.103 4.103 6 C -0.077 4.077 7 C -0.056 4.056 8 C 0.059 3.941 9 C -0.520 4.520 10 H 0.058 0.942 11 C 0.062 3.938 12 N -0.891 5.891 13 Si 0.896 3.104 14 H -0.278 1.278 15 H -0.285 1.285 16 H -0.273 1.273 17 C 0.023 3.977 18 N -0.346 5.346 19 C -0.085 4.085 20 C -0.068 4.068 21 H 0.068 0.932 22 H 0.069 0.931 23 H 0.068 0.932 24 H 0.143 0.857 25 H 0.141 0.859 26 H 0.038 0.962 27 H 0.032 0.968 28 H 0.264 0.736 29 H 0.158 0.842 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.156 2.140 1.967 12.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.087 4.087 3 N -0.228 5.228 4 C -0.023 4.023 5 C -0.123 4.123 6 C -0.101 4.101 7 C -0.058 4.058 8 C 0.021 3.979 9 C -0.558 4.558 10 H 0.076 0.924 11 C -0.140 4.140 12 N -0.530 5.530 13 Si 0.724 3.276 14 H -0.204 1.204 15 H -0.210 1.210 16 H -0.198 1.198 17 C -0.098 4.098 18 N -0.016 5.016 19 C -0.199 4.199 20 C -0.125 4.125 21 H 0.087 0.913 22 H 0.088 0.912 23 H 0.087 0.913 24 H 0.161 0.839 25 H 0.159 0.841 26 H 0.056 0.944 27 H 0.050 0.950 28 H 0.074 0.926 29 H 0.175 0.825 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.298 2.773 2.009 12.766 hybrid contribution 0.833 -1.039 -0.998 1.664 sum -11.465 1.735 1.011 11.640 Atomic orbital electron populations 1.20056 0.87589 1.02530 1.02111 1.20515 0.96229 0.87826 1.04174 1.70545 0.98347 1.29173 1.24741 1.20768 0.94239 0.80548 1.06750 1.20170 0.87994 0.99957 1.04221 1.21202 0.97844 0.94131 0.96899 1.20337 0.96475 0.93845 0.95193 1.18282 0.86489 0.94919 0.98173 1.21029 1.06428 1.37094 0.91204 0.92406 1.24990 0.96317 0.95330 0.97406 1.69942 1.13980 1.38230 1.30805 0.86514 0.78783 0.77824 0.84492 1.20416 1.21044 1.19820 1.21437 0.82063 0.98678 1.07591 1.42643 1.05608 1.08679 1.44658 1.20793 0.81689 0.97721 1.19653 1.20098 1.01372 0.88873 1.02196 0.91337 0.91181 0.91301 0.83906 0.84113 0.94390 0.94962 0.92623 0.82501 0.91486 0.90369 0.91752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.77 10.21 36.01 0.37 -0.40 16 2 C 0.05 0.78 7.06 -82.97 -0.59 0.19 16 3 N -0.51 -9.79 11.32 -9.00 -0.10 -9.90 16 4 C 0.22 4.28 7.81 -156.04 -1.22 3.07 16 5 C -0.10 -1.81 10.11 -39.36 -0.40 -2.21 16 6 C -0.08 -1.40 9.74 -39.54 -0.38 -1.79 16 7 C -0.06 -1.14 5.04 -104.94 -0.53 -1.67 16 8 C 0.06 1.40 5.09 -29.03 -0.15 1.25 16 9 C -0.52 -13.73 9.09 -34.44 -0.31 -14.04 16 10 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 11 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 12 N -0.89 -25.08 13.29 55.43 0.74 -24.34 16 13 Si 0.90 20.75 29.54 -169.99 -5.02 15.73 16 14 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 15 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 16 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 17 C 0.02 0.45 10.46 -16.65 -0.17 0.28 16 18 N -0.35 -6.57 2.94 -58.46 -0.17 -6.74 16 19 C -0.08 -1.42 7.03 -81.48 -0.57 -1.99 16 20 C -0.07 -0.84 10.09 36.00 0.36 -0.47 16 21 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 22 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 23 H 0.07 0.66 7.13 -51.93 -0.37 0.29 16 24 H 0.14 2.10 8.06 -52.48 -0.42 1.67 16 25 H 0.14 2.31 8.06 -52.49 -0.42 1.89 16 26 H 0.04 0.94 8.09 -51.93 -0.42 0.52 16 27 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 28 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.16 2.82 8.06 -52.48 -0.42 2.40 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.08 0.78 7.13 -51.93 -0.37 0.41 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 278.80 15.07 4.20 4.20 Total: -1.00 -30.37 278.80 -8.13 -38.49 By element: Atomic # 1 Polarization: 2.86 SS G_CDS: -4.08 Total: -1.22 kcal Atomic # 6 Polarization: -12.53 SS G_CDS: -3.69 Total: -16.22 kcal Atomic # 7 Polarization: -41.44 SS G_CDS: 0.46 Total: -40.98 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -30.37 -8.13 -38.49 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261248644.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.865 kcal (2) G-P(sol) polarization free energy of solvation -30.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds