Wall clock time and date at job start Mon Mar 30 2020 03:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.33517 * 125.68399 * 2 1 4 4 C 1.32557 * 109.15560 * 180.02562 * 3 2 1 5 5 C 1.40935 * 132.32547 * 180.02562 * 4 3 2 6 6 C 1.36014 * 119.32951 * 179.97438 * 5 4 3 7 7 C 1.40470 * 119.69479 * 0.02562 * 6 5 4 8 8 C 1.50708 * 119.85317 * 180.02562 * 7 6 5 9 9 C 1.50701 * 109.46886 * 269.96262 * 8 7 6 10 10 H 1.07994 * 120.00137 * 0.02562 * 9 8 7 11 11 C 1.37880 * 119.99602 * 179.97438 * 9 8 7 12 12 N 1.31512 * 119.99877 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 119.99978 * 180.02562 * 11 9 8 14 14 H 1.48493 * 109.47295 * 90.00158 * 13 11 9 15 15 H 1.48508 * 109.47011 * 210.00295 * 13 11 9 16 16 H 1.48503 * 109.47153 * 330.00197 * 13 11 9 17 17 C 1.34952 * 120.29684 * 359.97438 * 7 6 5 18 18 N 1.36479 * 120.61524 * 359.97438 * 17 7 6 19 19 C 1.35098 * 125.68831 * 180.02562 * 2 1 3 20 20 C 1.50698 * 126.40982 * 0.03101 * 19 2 1 21 21 H 1.09001 * 109.47109 * 269.99687 * 1 2 3 22 22 H 1.09003 * 109.46749 * 29.99767 * 1 2 3 23 23 H 1.08999 * 109.46605 * 149.99453 * 1 2 3 24 24 H 1.08009 * 120.33574 * 359.69368 * 5 4 3 25 25 H 1.08001 * 120.15923 * 179.97438 * 6 5 4 26 26 H 1.08996 * 109.46867 * 29.96282 * 8 7 6 27 27 H 1.08996 * 109.46801 * 149.96117 * 8 7 6 28 28 H 0.97003 * 119.99964 * 179.97438 * 12 11 9 29 29 H 1.08008 * 119.69533 * 180.02562 * 17 7 6 30 30 H 1.09003 * 109.47389 * 269.95909 * 20 19 2 31 31 H 1.08999 * 109.47408 * 29.96043 * 20 19 2 32 32 H 1.08997 * 109.47381 * 149.96492 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2859 1.0845 0.0000 4 6 3.5567 0.7074 -0.0006 5 6 4.7629 1.4363 -0.0003 6 6 5.9464 0.7661 -0.0006 7 6 5.9506 -0.6386 -0.0015 8 6 7.2599 -1.3849 -0.0012 9 6 7.6968 -1.6335 -1.4219 10 1 7.0875 -1.2855 -2.2429 11 6 8.8748 -2.3043 -1.6735 12 7 9.6169 -2.7276 -0.6737 13 14 9.4168 -2.6118 -3.4345 14 1 10.2533 -1.4768 -3.9004 15 1 10.2070 -3.8676 -3.4971 16 1 8.2208 -2.7356 -4.3060 17 6 4.7874 -1.3229 -0.0017 18 7 3.5928 -0.6630 -0.0005 19 6 2.2952 -1.0973 -0.0005 20 6 1.8320 -2.5313 -0.0018 21 1 -0.3633 -0.0001 1.0277 22 1 -0.3633 0.8900 -0.5138 23 1 -0.3632 -0.8900 -0.5139 24 1 4.7476 2.5163 -0.0046 25 1 6.8787 1.3112 -0.0008 26 1 8.0160 -0.7917 0.5130 27 1 7.1346 -2.3381 0.5125 28 1 10.4455 -3.1998 -0.8507 29 1 4.8020 -2.4029 -0.0021 30 1 1.7205 -2.8781 1.0256 31 1 0.8733 -2.6030 -0.5155 32 1 2.5671 -3.1501 -0.5163 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261248644.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:04 Heat of formation + Delta-G solvation = 48.630488 kcal Electronic energy + Delta-G solvation = -15235.224086 eV Core-core repulsion = 12774.502092 eV Total energy + Delta-G solvation = -2460.721995 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.74663 -38.89291 -35.40069 -34.83862 -33.52453 -31.90694 -30.10708 -28.20146 -27.05716 -25.08692 -23.26214 -22.79233 -20.91346 -18.55017 -18.20649 -17.67707 -17.04061 -16.68259 -15.72269 -15.59567 -14.56336 -14.51338 -14.09272 -14.04739 -13.83974 -13.78222 -13.37236 -13.25272 -12.88785 -12.75305 -12.62686 -12.36047 -12.24768 -11.83164 -11.72682 -11.32902 -11.04384 -10.62075 -9.38743 -8.60762 -8.22304 -6.35531 -0.09758 0.38283 1.40472 1.41512 1.51747 1.71019 1.86660 2.38177 2.63517 3.09533 3.27493 3.59132 3.80664 4.08767 4.15316 4.17376 4.32933 4.53488 4.62324 4.69556 4.88384 4.98479 4.99745 5.06424 5.10766 5.15319 5.30626 5.33195 5.57436 5.70857 5.76229 5.82329 6.10464 6.20630 6.75784 6.92443 7.33625 8.86234 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.038142 B = 0.006192 C = 0.005842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.919117 B = 4520.687213 C = 4792.025442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.034 3.966 3 N -0.526 5.526 4 C 0.189 3.811 5 C -0.093 4.093 6 C -0.088 4.088 7 C -0.073 4.073 8 C 0.069 3.931 9 C -0.532 4.532 10 H 0.052 0.948 11 C 0.013 3.987 12 N -0.925 5.925 13 Si 0.960 3.040 14 H -0.272 1.272 15 H -0.280 1.280 16 H -0.270 1.270 17 C 0.025 3.975 18 N -0.356 5.356 19 C -0.090 4.090 20 C -0.067 4.067 21 H 0.084 0.916 22 H 0.071 0.929 23 H 0.096 0.904 24 H 0.170 0.830 25 H 0.154 0.846 26 H 0.021 0.979 27 H 0.014 0.986 28 H 0.267 0.733 29 H 0.164 0.836 30 H 0.082 0.918 31 H 0.107 0.893 32 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.858 2.015 1.216 14.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.099 4.099 3 N -0.248 5.248 4 C -0.053 4.053 5 C -0.113 4.113 6 C -0.112 4.112 7 C -0.076 4.076 8 C 0.032 3.968 9 C -0.570 4.570 10 H 0.070 0.930 11 C -0.186 4.186 12 N -0.564 5.564 13 Si 0.785 3.215 14 H -0.197 1.197 15 H -0.205 1.205 16 H -0.195 1.195 17 C -0.096 4.096 18 N -0.027 5.027 19 C -0.203 4.203 20 C -0.125 4.125 21 H 0.103 0.897 22 H 0.090 0.910 23 H 0.114 0.886 24 H 0.187 0.813 25 H 0.171 0.829 26 H 0.040 0.960 27 H 0.033 0.967 28 H 0.076 0.924 29 H 0.182 0.818 30 H 0.101 0.899 31 H 0.126 0.874 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -14.020 2.655 1.260 14.325 hybrid contribution 1.218 -0.994 -0.720 1.729 sum -12.802 1.661 0.539 12.921 Atomic orbital electron populations 1.20228 0.84194 1.04000 1.03585 1.21370 0.98350 0.87061 1.03128 1.70556 0.98597 1.30530 1.25137 1.21201 0.94980 0.81161 1.07989 1.20447 0.87104 1.01193 1.02520 1.21248 0.98843 0.93252 0.97835 1.20046 0.95330 0.94810 0.97377 1.17997 0.87999 0.94181 0.96643 1.21314 1.06508 1.36862 0.92267 0.92951 1.25783 0.96410 0.95111 1.01283 1.70044 1.14474 1.39064 1.32817 0.85523 0.78370 0.77888 0.79742 1.19732 1.20515 1.19473 1.21401 0.82250 0.98941 1.07012 1.42818 1.06129 1.08733 1.45025 1.21666 0.80742 0.99886 1.18055 1.20287 1.02533 0.86028 1.03610 0.89736 0.91003 0.88568 0.81253 0.82871 0.96030 0.96729 0.92429 0.81844 0.89914 0.87407 0.92081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.28 10.21 71.24 0.73 -0.55 16 2 C 0.03 1.07 7.06 41.58 0.29 1.36 16 3 N -0.53 -19.69 11.32 -182.40 -2.06 -21.76 16 4 C 0.19 7.23 7.81 134.11 1.05 8.28 16 5 C -0.09 -3.19 10.11 22.41 0.23 -2.97 16 6 C -0.09 -3.22 9.74 22.30 0.22 -3.01 16 7 C -0.07 -3.03 5.04 -20.07 -0.10 -3.13 16 8 C 0.07 3.41 5.09 29.10 0.15 3.55 16 9 C -0.53 -28.50 9.09 25.60 0.23 -28.27 16 10 H 0.05 2.81 7.74 -2.91 -0.02 2.78 16 11 C 0.01 0.72 5.46 84.66 0.46 1.18 16 12 N -0.92 -52.73 13.29 21.45 0.28 -52.45 16 13 Si 0.96 42.50 29.54 68.60 2.03 44.52 16 14 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 15 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 16 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 17 C 0.03 0.97 10.46 83.21 0.87 1.84 16 18 N -0.36 -13.27 2.94 -338.88 -1.00 -14.27 16 19 C -0.09 -2.86 7.03 41.05 0.29 -2.57 16 20 C -0.07 -1.47 10.09 71.24 0.72 -0.75 16 21 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 22 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 23 H 0.10 1.43 7.13 -2.39 -0.02 1.41 16 24 H 0.17 4.73 8.06 -2.91 -0.02 4.71 16 25 H 0.15 5.06 8.06 -2.91 -0.02 5.04 16 26 H 0.02 1.10 8.09 -2.39 -0.02 1.08 16 27 H 0.01 0.75 8.07 -2.39 -0.02 0.73 16 28 H 0.27 14.33 8.31 -92.71 -0.77 13.56 16 29 H 0.16 5.93 8.06 -2.91 -0.02 5.90 16 30 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.11 1.71 7.13 -2.39 -0.02 1.69 16 32 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -65.09 278.80 5.49 -59.60 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: 1.11 Total: 9.36 kcal Atomic # 6 Polarization: -30.15 SS G_CDS: 5.13 Total: -25.02 kcal Atomic # 7 Polarization: -85.69 SS G_CDS: -2.78 Total: -88.47 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.52 kcal Total: -65.09 5.49 -59.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261248644.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.234 kcal (2) G-P(sol) polarization free energy of solvation -65.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds