Wall clock time and date at job start Mon Mar 30 2020 03:00:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86793 * 120.00521 * 2 1 4 4 H 1.48504 * 109.47104 * 270.00663 * 3 2 1 5 5 H 1.48501 * 109.47178 * 30.00140 * 3 2 1 6 6 H 1.48495 * 109.47480 * 150.00247 * 3 2 1 7 7 C 1.37882 * 119.99827 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00194 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99628 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46823 * 180.02562 * 9 7 2 11 11 H 1.08993 * 109.47537 * 305.00190 * 10 9 7 12 12 N 1.46896 * 109.46927 * 65.00288 * 10 9 7 13 13 C 1.50701 * 109.47003 * 184.99917 * 10 9 7 14 14 C 1.37789 * 120.11251 * 265.01370 * 13 10 9 15 15 C 1.38788 * 120.66660 * 180.02562 * 14 13 10 16 16 C 1.36670 * 120.52797 * 359.95958 * 15 14 13 17 17 C 1.39586 * 119.76411 * 0.02562 * 16 15 14 18 18 C 1.46495 * 134.03774 * 180.29289 * 17 16 15 19 19 C 1.34233 * 107.00046 * 180.13442 * 18 17 16 20 20 N 1.36837 * 109.93996 * 359.59422 * 19 18 17 21 21 H 0.97000 * 125.06572 * 180.30481 * 20 19 18 22 22 C 1.37694 * 109.87181 * 0.26491 * 20 19 18 23 23 H 0.97005 * 119.99843 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47261 * 60.00459 * 9 7 2 25 25 H 1.08997 * 109.47792 * 300.00057 * 9 7 2 26 26 H 1.00900 * 111.00565 * 296.04324 * 12 10 9 27 27 H 1.00906 * 111.00131 * 60.00301 * 12 10 9 28 28 H 1.07996 * 119.67090 * 0.02562 * 14 13 10 29 29 H 1.08000 * 119.73950 * 179.97438 * 15 14 13 30 30 H 1.07997 * 120.11709 * 180.02562 * 16 15 14 31 31 H 1.07997 * 126.49894 * 0.02562 * 18 17 16 32 32 H 1.08002 * 125.03336 * 179.86397 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 1 2.9292 -3.5553 -0.8422 12 7 3.0081 -3.6540 1.2547 13 6 1.4956 -4.9637 -0.1243 14 6 1.1628 -5.6799 1.0048 15 6 0.4732 -6.8801 0.9041 16 6 0.1112 -7.3723 -0.3185 17 6 0.4379 -6.6630 -1.4754 18 6 0.2094 -6.8859 -2.9052 19 6 0.7624 -5.8509 -3.5570 20 7 1.3186 -4.9787 -2.6613 21 1 1.7723 -4.1538 -2.8950 22 6 1.1375 -5.4460 -1.3788 23 1 -0.4850 0.8401 0.0004 24 1 0.6239 -2.5567 -0.8903 25 1 0.6245 -2.5571 0.8896 26 1 3.5699 -2.8193 1.3311 27 1 2.3958 -3.7518 2.0507 28 1 1.4413 -5.3035 1.9780 29 1 0.2203 -7.4293 1.7989 30 1 -0.4256 -8.3067 -0.3891 31 1 -0.3048 -7.7248 -3.3504 32 1 0.7639 -5.7231 -4.6295 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261253408.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:15 Heat of formation + Delta-G solvation = 44.806893 kcal Electronic energy + Delta-G solvation = -15450.683904 eV Core-core repulsion = 12989.796106 eV Total energy + Delta-G solvation = -2460.887798 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.84066 -37.09295 -35.17018 -32.58552 -30.86486 -29.06376 -28.22903 -27.87172 -24.56693 -22.22130 -21.35251 -20.66548 -19.32290 -17.66099 -16.50033 -15.65359 -15.10894 -14.69731 -14.63951 -14.02392 -13.65115 -13.22728 -12.68390 -12.63495 -12.55934 -12.05792 -11.86728 -11.29491 -11.22865 -10.93115 -10.85724 -10.42513 -10.32903 -9.95456 -9.23654 -9.08877 -8.51815 -7.88379 -7.73443 -7.15667 -6.12976 -4.18768 1.60561 2.12177 3.09141 3.22239 3.29727 3.32004 3.58322 4.32233 4.40573 5.07668 5.17443 5.22633 5.42854 5.51288 5.58912 5.75833 5.89062 6.00781 6.15570 6.26283 6.45062 6.52764 6.69316 7.00797 7.04023 7.13608 7.20669 7.40665 7.54520 7.63708 7.81041 7.92347 8.02647 8.17180 8.29506 8.88398 9.46869 10.97158 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.032331 B = 0.007158 C = 0.006435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.834206 B = 3910.824661 C = 4349.885338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.061 3.939 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.529 4.529 8 H 0.056 0.944 9 C 0.003 3.997 10 C 0.128 3.872 11 H 0.067 0.933 12 N -0.838 5.838 13 C -0.058 4.058 14 C -0.099 4.099 15 C -0.142 4.142 16 C -0.094 4.094 17 C -0.112 4.112 18 C -0.216 4.216 19 C 0.048 3.952 20 N -0.589 5.589 21 H 0.418 0.582 22 C 0.103 3.897 23 H 0.262 0.738 24 H 0.016 0.984 25 H 0.019 0.981 26 H 0.345 0.655 27 H 0.331 0.669 28 H 0.124 0.876 29 H 0.115 0.885 30 H 0.113 0.887 31 H 0.140 0.860 32 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.370 -11.197 -3.165 11.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.142 4.142 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.568 4.568 8 H 0.075 0.925 9 C -0.036 4.036 10 C 0.017 3.983 11 H 0.085 0.915 12 N -0.367 5.367 13 C -0.060 4.060 14 C -0.119 4.119 15 C -0.161 4.161 16 C -0.113 4.113 17 C -0.116 4.116 18 C -0.242 4.242 19 C -0.079 4.079 20 N -0.191 5.191 21 H 0.255 0.745 22 C -0.005 4.005 23 H 0.072 0.928 24 H 0.034 0.966 25 H 0.037 0.963 26 H 0.159 0.841 27 H 0.143 0.857 28 H 0.141 0.859 29 H 0.133 0.867 30 H 0.131 0.869 31 H 0.158 0.842 32 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 1.636 -11.622 -3.509 12.250 hybrid contribution -0.074 2.301 -0.019 2.302 sum 1.561 -9.321 -3.528 10.088 Atomic orbital electron populations 1.69978 1.06111 1.26800 1.49809 1.25028 0.94822 0.99326 0.94994 0.86584 0.79854 0.83365 0.78148 1.20670 1.21165 1.19759 1.21166 0.92858 0.90839 1.51894 0.92535 1.19778 0.94329 0.91563 0.97894 1.20398 0.94241 0.90938 0.92762 0.91486 1.59262 1.27944 1.45699 1.03834 1.19184 1.00096 0.97126 0.89634 1.20580 0.98935 0.94774 0.97635 1.20560 1.01469 0.97160 0.96914 1.20078 1.00961 0.99258 0.90979 1.19149 1.03178 0.95742 0.93580 1.21561 1.09731 1.01472 0.91446 1.21744 0.99566 0.91527 0.95083 1.41853 1.50606 1.22257 1.04391 0.74517 1.18054 1.01874 0.95189 0.85340 0.92845 0.96564 0.96279 0.84128 0.85704 0.85864 0.86685 0.86880 0.84221 0.81795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.16 13.29 55.43 0.74 -25.42 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.53 -14.17 8.55 -34.44 -0.29 -14.46 16 8 H 0.06 1.46 7.15 -52.49 -0.38 1.08 16 9 C 0.00 0.07 4.60 -27.88 -0.13 -0.06 16 10 C 0.13 2.66 3.00 -68.86 -0.21 2.45 16 11 H 0.07 1.41 8.12 -51.93 -0.42 0.98 16 12 N -0.84 -15.86 8.79 -5.66 -0.05 -15.91 16 13 C -0.06 -1.13 5.07 -104.47 -0.53 -1.66 16 14 C -0.10 -1.77 9.26 -39.54 -0.37 -2.14 16 15 C -0.14 -2.25 9.97 -39.94 -0.40 -2.65 16 16 C -0.09 -1.49 10.05 -39.65 -0.40 -1.89 16 17 C -0.11 -1.94 6.37 -105.14 -0.67 -2.61 16 18 C -0.22 -3.16 11.08 -37.67 -0.42 -3.58 16 19 C 0.05 0.66 11.81 -16.73 -0.20 0.46 16 20 N -0.59 -9.56 6.07 -10.65 -0.06 -9.63 16 21 H 0.42 6.33 8.96 -40.82 -0.37 5.97 16 22 C 0.10 1.93 6.97 -83.98 -0.59 1.34 16 23 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 24 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.35 6.62 7.90 -39.29 -0.31 6.31 16 27 H 0.33 5.97 7.21 -39.29 -0.28 5.69 16 28 H 0.12 2.04 6.27 -52.49 -0.33 1.71 16 29 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 30 H 0.11 1.48 8.06 -52.49 -0.42 1.05 16 31 H 0.14 1.65 8.06 -52.49 -0.42 1.22 16 32 H 0.16 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 273.63 15.07 4.12 4.12 Total: -1.00 -30.77 273.63 -8.32 -39.09 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: -3.76 Total: 14.97 kcal Atomic # 6 Polarization: -18.92 SS G_CDS: -4.29 Total: -23.21 kcal Atomic # 7 Polarization: -51.58 SS G_CDS: 0.62 Total: -50.96 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -30.77 -8.32 -39.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261253408.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.901 kcal (2) G-P(sol) polarization free energy of solvation -30.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds