Wall clock time and date at job start Mon Mar 30 2020 03:00:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86793 * 120.00521 * 2 1 4 4 H 1.48504 * 109.47104 * 270.00663 * 3 2 1 5 5 H 1.48501 * 109.47178 * 30.00140 * 3 2 1 6 6 H 1.48495 * 109.47480 * 150.00247 * 3 2 1 7 7 C 1.37882 * 119.99827 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00194 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99628 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46823 * 180.02562 * 9 7 2 11 11 H 1.08993 * 109.47537 * 305.00190 * 10 9 7 12 12 N 1.46896 * 109.46927 * 65.00288 * 10 9 7 13 13 C 1.50701 * 109.47003 * 184.99917 * 10 9 7 14 14 C 1.37789 * 120.11251 * 265.01370 * 13 10 9 15 15 C 1.38788 * 120.66660 * 180.02562 * 14 13 10 16 16 C 1.36670 * 120.52797 * 359.95958 * 15 14 13 17 17 C 1.39586 * 119.76411 * 0.02562 * 16 15 14 18 18 C 1.46495 * 134.03774 * 180.29289 * 17 16 15 19 19 C 1.34233 * 107.00046 * 180.13442 * 18 17 16 20 20 N 1.36837 * 109.93996 * 359.59422 * 19 18 17 21 21 H 0.97000 * 125.06572 * 180.30481 * 20 19 18 22 22 C 1.37694 * 109.87181 * 0.26491 * 20 19 18 23 23 H 0.97005 * 119.99843 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47261 * 60.00459 * 9 7 2 25 25 H 1.08997 * 109.47792 * 300.00057 * 9 7 2 26 26 H 1.00900 * 111.00565 * 296.04324 * 12 10 9 27 27 H 1.00906 * 111.00131 * 60.00301 * 12 10 9 28 28 H 1.07996 * 119.67090 * 0.02562 * 14 13 10 29 29 H 1.08000 * 119.73950 * 179.97438 * 15 14 13 30 30 H 1.07997 * 120.11709 * 180.02562 * 16 15 14 31 31 H 1.07997 * 126.49894 * 0.02562 * 18 17 16 32 32 H 1.08002 * 125.03336 * 179.86397 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 1 2.9292 -3.5553 -0.8422 12 7 3.0081 -3.6540 1.2547 13 6 1.4956 -4.9637 -0.1243 14 6 1.1628 -5.6799 1.0048 15 6 0.4732 -6.8801 0.9041 16 6 0.1112 -7.3723 -0.3185 17 6 0.4379 -6.6630 -1.4754 18 6 0.2094 -6.8859 -2.9052 19 6 0.7624 -5.8509 -3.5570 20 7 1.3186 -4.9787 -2.6613 21 1 1.7723 -4.1538 -2.8950 22 6 1.1375 -5.4460 -1.3788 23 1 -0.4850 0.8401 0.0004 24 1 0.6239 -2.5567 -0.8903 25 1 0.6245 -2.5571 0.8896 26 1 3.5699 -2.8193 1.3311 27 1 2.3958 -3.7518 2.0507 28 1 1.4413 -5.3035 1.9780 29 1 0.2203 -7.4293 1.7989 30 1 -0.4256 -8.3067 -0.3891 31 1 -0.3048 -7.7248 -3.3504 32 1 0.7639 -5.7231 -4.6295 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261253408.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:15 Heat of formation + Delta-G solvation = 24.638799 kcal Electronic energy + Delta-G solvation = -15451.558459 eV Core-core repulsion = 12989.796106 eV Total energy + Delta-G solvation = -2461.762353 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.07551 -38.51237 -36.70892 -34.59273 -32.19134 -30.40977 -29.91835 -29.30386 -26.36602 -23.84316 -22.66931 -21.99435 -20.71208 -19.14576 -18.37144 -16.89515 -16.66430 -16.52850 -16.09297 -15.34496 -15.02682 -14.60823 -14.48520 -14.29308 -13.81598 -13.72615 -13.31914 -12.95662 -12.82017 -12.54723 -12.38382 -12.10718 -11.97859 -11.73591 -11.13917 -10.67563 -10.41693 -9.49122 -9.03169 -8.45811 -8.24421 -6.39405 0.33041 0.82255 1.37001 1.37722 1.48897 1.93282 2.35103 2.40688 3.06508 3.07804 3.77690 3.95796 4.10769 4.21611 4.33714 4.43713 4.54214 4.73176 4.80390 4.88545 5.05311 5.18661 5.25125 5.31513 5.45675 5.67855 5.75550 5.77458 5.93303 5.97259 6.09959 6.36412 6.37924 6.67874 6.74131 6.77280 7.31279 8.84974 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.032331 B = 0.007158 C = 0.006435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.834206 B = 3910.824661 C = 4349.885338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.004 3.996 3 Si 0.965 3.035 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.260 1.260 7 C -0.539 4.539 8 H 0.066 0.934 9 C 0.018 3.982 10 C 0.146 3.854 11 H 0.061 0.939 12 N -0.827 5.827 13 C -0.090 4.090 14 C -0.111 4.111 15 C -0.147 4.147 16 C -0.093 4.093 17 C -0.133 4.133 18 C -0.226 4.226 19 C 0.053 3.947 20 N -0.597 5.597 21 H 0.418 0.582 22 C 0.071 3.929 23 H 0.263 0.737 24 H -0.017 1.017 25 H -0.013 1.013 26 H 0.344 0.656 27 H 0.336 0.664 28 H 0.128 0.872 29 H 0.147 0.853 30 H 0.145 0.855 31 H 0.170 0.830 32 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.887 -12.080 -3.743 12.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.790 3.210 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.184 1.184 7 C -0.577 4.577 8 H 0.084 0.916 9 C -0.020 4.020 10 C 0.033 3.967 11 H 0.079 0.921 12 N -0.356 5.356 13 C -0.093 4.093 14 C -0.130 4.130 15 C -0.166 4.166 16 C -0.111 4.111 17 C -0.138 4.138 18 C -0.250 4.250 19 C -0.073 4.073 20 N -0.200 5.200 21 H 0.255 0.745 22 C -0.037 4.037 23 H 0.072 0.928 24 H 0.002 0.998 25 H 0.006 0.994 26 H 0.157 0.843 27 H 0.149 0.851 28 H 0.146 0.854 29 H 0.164 0.836 30 H 0.163 0.837 31 H 0.188 0.812 32 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 2.167 -12.525 -4.087 13.352 hybrid contribution -0.280 2.497 0.135 2.517 sum 1.888 -10.028 -3.952 10.943 Atomic orbital electron populations 1.70125 1.07964 1.27772 1.51159 1.25965 0.95619 1.03350 0.94544 0.85440 0.78757 0.78414 0.78391 1.19993 1.21139 1.18356 1.21550 0.93445 0.91622 1.51060 0.91590 1.19593 0.94349 0.93424 0.94682 1.20059 0.93039 0.90362 0.93192 0.92121 1.59255 1.27532 1.45336 1.03451 1.19187 1.01973 0.97136 0.91043 1.20818 0.99187 0.95646 0.97359 1.20903 1.00731 0.96530 0.98399 1.20521 1.00068 1.00047 0.90475 1.19684 1.03094 0.95453 0.95535 1.21980 1.10149 1.02741 0.90160 1.22504 0.97760 0.90349 0.96676 1.42037 1.50940 1.22742 1.04252 0.74542 1.18340 1.02989 0.96398 0.85924 0.92832 0.99837 0.99441 0.84274 0.85116 0.85413 0.83575 0.83732 0.81243 0.77613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.10 13.29 21.45 0.28 -55.81 16 2 C 0.00 0.21 5.46 84.66 0.46 0.67 16 3 Si 0.97 43.19 29.54 68.60 2.03 45.22 16 4 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 5 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.26 -10.97 7.11 99.48 0.71 -10.27 16 7 C -0.54 -29.32 8.55 25.60 0.22 -29.10 16 8 H 0.07 3.39 7.15 -2.91 -0.02 3.37 16 9 C 0.02 0.95 4.60 29.85 0.14 1.09 16 10 C 0.15 6.20 3.00 44.17 0.13 6.33 16 11 H 0.06 2.62 8.12 -2.39 -0.02 2.60 16 12 N -0.83 -31.59 8.79 -171.80 -1.51 -33.10 16 13 C -0.09 -3.61 5.07 -19.77 -0.10 -3.71 16 14 C -0.11 -3.94 9.26 22.29 0.21 -3.74 16 15 C -0.15 -4.44 9.97 22.03 0.22 -4.22 16 16 C -0.09 -2.76 10.05 22.23 0.22 -2.54 16 17 C -0.13 -4.45 6.37 -20.20 -0.13 -4.58 16 18 C -0.23 -6.08 11.08 23.51 0.26 -5.82 16 19 C 0.05 1.36 11.81 83.00 0.98 2.34 16 20 N -0.60 -19.33 6.07 -187.60 -1.14 -20.47 16 21 H 0.42 12.94 8.96 -92.71 -0.83 12.11 16 22 C 0.07 2.69 6.97 39.03 0.27 2.96 16 23 H 0.26 14.97 8.31 -92.70 -0.77 14.20 16 24 H -0.02 -0.98 8.14 -2.39 -0.02 -0.99 16 25 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 26 H 0.34 13.19 7.90 -89.69 -0.71 12.48 16 27 H 0.34 12.30 7.21 -89.69 -0.65 11.65 16 28 H 0.13 4.25 6.27 -2.91 -0.02 4.23 16 29 H 0.15 3.39 8.06 -2.91 -0.02 3.37 16 30 H 0.14 3.30 8.06 -2.91 -0.02 3.27 16 31 H 0.17 3.40 8.06 -2.91 -0.02 3.38 16 32 H 0.21 3.24 8.06 -2.91 -0.02 3.21 16 Total: -1.00 -67.37 273.63 1.52 -65.85 By element: Atomic # 1 Polarization: 39.67 SS G_CDS: -1.03 Total: 38.64 kcal Atomic # 6 Polarization: -43.20 SS G_CDS: 2.88 Total: -40.32 kcal Atomic # 7 Polarization: -107.02 SS G_CDS: -2.36 Total: -109.39 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -67.37 1.52 -65.85 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261253408.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.487 kcal (2) G-P(sol) polarization free energy of solvation -67.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds