Wall clock time and date at job start Mon Mar 30 2020 03:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.33518 * 125.68687 * 2 1 4 4 C 1.32555 * 109.16011 * 179.74867 * 3 2 1 5 5 C 1.40933 * 132.32528 * 179.54070 * 4 3 2 6 6 C 1.50703 * 120.33678 * 0.68336 * 5 4 3 7 7 C 1.50701 * 109.47064 * 84.71830 * 6 5 4 8 8 H 1.07998 * 120.00129 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99861 * 179.97438 * 7 6 5 10 10 N 1.31510 * 119.99913 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 119.99734 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47094 * 90.00289 * 11 9 7 13 13 H 1.48505 * 109.47195 * 210.00171 * 11 9 7 14 14 H 1.48493 * 109.47449 * 330.00136 * 11 9 7 15 15 C 1.36025 * 119.32793 * 180.40199 * 5 4 3 16 16 C 1.40474 * 119.69331 * 0.26456 * 15 5 4 17 17 C 1.34950 * 120.29958 * 0.02562 * 16 15 5 18 18 N 1.36488 * 120.61101 * 359.97438 * 17 16 15 19 19 C 1.35104 * 125.68918 * 180.02562 * 2 1 3 20 20 C 1.50706 * 126.40955 * 0.02562 * 19 2 1 21 21 H 1.08995 * 109.47085 * 270.00225 * 1 2 3 22 22 H 1.08996 * 109.47037 * 29.99797 * 1 2 3 23 23 H 1.08999 * 109.46661 * 150.00023 * 1 2 3 24 24 H 1.09002 * 109.47152 * 324.71922 * 6 5 4 25 25 H 1.09001 * 109.46980 * 204.72023 * 6 5 4 26 26 H 0.97002 * 119.99768 * 179.97438 * 10 9 7 27 27 H 1.08000 * 120.15268 * 180.26999 * 15 5 4 28 28 H 1.07999 * 119.84897 * 180.02562 * 16 15 5 29 29 H 1.07998 * 119.69747 * 180.02562 * 17 16 15 30 30 H 1.08999 * 109.47397 * 269.97962 * 20 19 2 31 31 H 1.09004 * 109.46435 * 29.98118 * 20 19 2 32 32 H 1.08998 * 109.46601 * 149.97383 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2859 1.0845 0.0000 4 6 3.5567 0.7074 0.0055 5 6 4.7629 1.4363 -0.0004 6 6 4.7416 2.9432 -0.0004 7 6 4.6106 3.4437 1.4151 8 1 4.5494 2.7409 2.2328 9 6 4.5701 4.7988 1.6661 10 7 4.6452 5.6546 0.6703 11 14 4.4085 5.4191 3.4207 12 1 5.7603 5.6028 4.0072 13 1 3.6876 6.7175 3.4223 14 1 3.6490 4.4304 4.2273 15 6 5.9465 0.7660 -0.0004 16 6 5.9506 -0.6388 -0.0001 17 6 4.7874 -1.3230 -0.0003 18 7 3.5928 -0.6629 -0.0004 19 6 2.2952 -1.0973 -0.0005 20 6 1.8320 -2.5314 -0.0017 21 1 -0.3633 0.0000 1.0276 22 1 -0.3633 0.8900 -0.5138 23 1 -0.3632 -0.8900 -0.5138 24 1 3.8947 3.2946 -0.5898 25 1 5.6678 3.3196 -0.4347 26 1 4.6162 6.6079 0.8470 27 1 6.8787 1.3112 -0.0005 28 1 6.8889 -1.1736 0.0004 29 1 4.8019 -2.4029 0.0003 30 1 1.7203 -2.8780 1.0257 31 1 0.8734 -2.6030 -0.5157 32 1 2.5672 -3.1502 -0.5161 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261254386.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:05 Heat of formation + Delta-G solvation = 70.490114 kcal Electronic energy + Delta-G solvation = -15483.756293 eV Core-core repulsion = 13023.982203 eV Total energy + Delta-G solvation = -2459.774090 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.28409 -37.14729 -34.36009 -32.55090 -31.93064 -30.51795 -28.20594 -26.93479 -25.67079 -23.33884 -21.87571 -20.91424 -19.41194 -16.69451 -16.37967 -16.28888 -15.53800 -14.97720 -14.53924 -13.53201 -13.34589 -13.09305 -12.81814 -12.72610 -12.35762 -12.21322 -12.05029 -11.71055 -11.38975 -11.09707 -10.93852 -10.64498 -10.48055 -10.17492 -9.68082 -9.28737 -9.19744 -8.35149 -7.99924 -7.06256 -5.97045 -3.99533 1.41158 1.81762 3.09236 3.29829 3.35318 3.41236 3.46883 4.20640 4.52535 4.76330 4.86067 5.00645 5.20376 5.37032 5.41884 5.48299 5.54192 5.64333 5.71650 5.85378 5.94346 6.09261 6.12652 6.28735 6.53846 6.70635 6.89456 7.12948 7.21136 7.51022 7.66580 7.81464 7.97311 8.34474 8.55329 9.02032 9.62336 11.13155 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.026956 B = 0.008130 C = 0.006911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.497216 B = 3443.337840 C = 4050.417197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.049 3.951 3 N -0.467 5.467 4 C 0.237 3.763 5 C 0.018 3.982 6 C 0.058 3.942 7 C -0.502 4.502 8 H 0.053 0.947 9 C 0.060 3.940 10 N -0.894 5.894 11 Si 0.896 3.104 12 H -0.280 1.280 13 H -0.285 1.285 14 H -0.274 1.274 15 C -0.151 4.151 16 C -0.118 4.118 17 C 0.005 3.995 18 N -0.355 5.355 19 C -0.095 4.095 20 C -0.061 4.061 21 H 0.069 0.931 22 H 0.072 0.928 23 H 0.066 0.934 24 H 0.042 0.958 25 H 0.035 0.965 26 H 0.262 0.738 27 H 0.137 0.863 28 H 0.140 0.860 29 H 0.149 0.851 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.156 -15.561 -2.048 15.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.086 4.086 3 N -0.186 5.186 4 C -0.006 4.006 5 C 0.016 3.984 6 C 0.021 3.979 7 C -0.540 4.540 8 H 0.072 0.928 9 C -0.141 4.141 10 N -0.533 5.533 11 Si 0.724 3.276 12 H -0.207 1.207 13 H -0.211 1.211 14 H -0.199 1.199 15 C -0.174 4.174 16 C -0.139 4.139 17 C -0.116 4.116 18 N -0.027 5.027 19 C -0.208 4.208 20 C -0.119 4.119 21 H 0.088 0.912 22 H 0.091 0.909 23 H 0.085 0.915 24 H 0.060 0.940 25 H 0.053 0.947 26 H 0.071 0.929 27 H 0.155 0.845 28 H 0.158 0.842 29 H 0.167 0.833 30 H 0.083 0.917 31 H 0.096 0.904 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.474 -14.626 -2.096 14.981 hybrid contribution 0.355 -0.491 1.031 1.196 sum -2.119 -15.117 -1.065 15.302 Atomic orbital electron populations 1.20069 0.87607 1.02486 1.02253 1.20690 0.96501 0.87897 1.03527 1.70757 0.98419 1.28209 1.21213 1.20868 0.94520 0.79273 1.05932 1.20041 0.87337 0.99631 0.91386 1.18299 0.98998 0.82196 0.98432 1.20885 1.50410 0.91412 0.91274 0.92832 1.24940 0.95217 0.96749 0.97191 1.69949 1.50531 1.02082 1.30726 0.86524 0.78070 0.78256 0.84783 1.20659 1.21089 1.19918 1.20861 0.98448 0.92912 1.05227 1.20741 0.96578 0.95040 1.01538 1.21198 0.83431 0.97904 1.09098 1.42686 1.05247 1.09017 1.45720 1.20719 0.81800 0.97511 1.20742 1.20040 1.01158 0.88783 1.01955 0.91230 0.90865 0.91512 0.93953 0.94717 0.92869 0.84491 0.84186 0.83347 0.91679 0.90356 0.92402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.94 10.21 36.01 0.37 -0.57 16 2 C 0.05 0.93 7.06 -82.97 -0.59 0.34 16 3 N -0.47 -11.09 11.31 -9.00 -0.10 -11.19 16 4 C 0.24 5.44 7.54 -156.04 -1.18 4.26 16 5 C 0.02 0.42 5.09 -104.40 -0.53 -0.11 16 6 C 0.06 1.57 5.12 -29.03 -0.15 1.42 16 7 C -0.50 -14.66 9.09 -34.44 -0.31 -14.98 16 8 H 0.05 1.58 7.74 -52.49 -0.41 1.17 16 9 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 10 N -0.89 -27.12 13.29 55.43 0.74 -26.38 16 11 Si 0.90 22.38 29.54 -169.99 -5.02 17.36 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 13 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 14 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 15 C -0.15 -2.85 9.70 -39.53 -0.38 -3.23 16 16 C -0.12 -1.78 9.99 -39.91 -0.40 -2.18 16 17 C 0.01 0.08 10.85 -16.65 -0.18 -0.10 16 18 N -0.36 -6.71 2.95 -58.46 -0.17 -6.89 16 19 C -0.09 -1.61 7.03 -81.47 -0.57 -2.18 16 20 C -0.06 -0.70 10.09 36.01 0.36 -0.34 16 21 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 22 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 23 H 0.07 0.72 7.13 -51.93 -0.37 0.35 16 24 H 0.04 1.25 8.13 -51.93 -0.42 0.83 16 25 H 0.03 0.94 8.05 -51.93 -0.42 0.52 16 26 H 0.26 7.47 8.31 -40.82 -0.34 7.14 16 27 H 0.14 2.38 8.06 -52.49 -0.42 1.95 16 28 H 0.14 1.52 8.06 -52.49 -0.42 1.09 16 29 H 0.15 1.67 8.06 -52.49 -0.42 1.24 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.08 0.74 7.13 -51.93 -0.37 0.37 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 278.86 15.07 4.20 4.20 Total: -1.00 -34.07 278.86 -8.09 -42.16 By element: Atomic # 1 Polarization: 0.81 SS G_CDS: -4.08 Total: -3.27 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: -3.66 Total: -15.99 kcal Atomic # 7 Polarization: -44.92 SS G_CDS: 0.46 Total: -44.46 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -34.07 -8.09 -42.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261254386.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.653 kcal (2) G-P(sol) polarization free energy of solvation -34.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds