Wall clock time and date at job start Mon Mar 30 2020 03:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.33518 * 125.68687 * 2 1 4 4 C 1.32555 * 109.16011 * 179.74867 * 3 2 1 5 5 C 1.40933 * 132.32528 * 179.54070 * 4 3 2 6 6 C 1.50703 * 120.33678 * 0.68336 * 5 4 3 7 7 C 1.50701 * 109.47064 * 84.71830 * 6 5 4 8 8 H 1.07998 * 120.00129 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99861 * 179.97438 * 7 6 5 10 10 N 1.31510 * 119.99913 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 119.99734 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47094 * 90.00289 * 11 9 7 13 13 H 1.48505 * 109.47195 * 210.00171 * 11 9 7 14 14 H 1.48493 * 109.47449 * 330.00136 * 11 9 7 15 15 C 1.36025 * 119.32793 * 180.40199 * 5 4 3 16 16 C 1.40474 * 119.69331 * 0.26456 * 15 5 4 17 17 C 1.34950 * 120.29958 * 0.02562 * 16 15 5 18 18 N 1.36488 * 120.61101 * 359.97438 * 17 16 15 19 19 C 1.35104 * 125.68918 * 180.02562 * 2 1 3 20 20 C 1.50706 * 126.40955 * 0.02562 * 19 2 1 21 21 H 1.08995 * 109.47085 * 270.00225 * 1 2 3 22 22 H 1.08996 * 109.47037 * 29.99797 * 1 2 3 23 23 H 1.08999 * 109.46661 * 150.00023 * 1 2 3 24 24 H 1.09002 * 109.47152 * 324.71922 * 6 5 4 25 25 H 1.09001 * 109.46980 * 204.72023 * 6 5 4 26 26 H 0.97002 * 119.99768 * 179.97438 * 10 9 7 27 27 H 1.08000 * 120.15268 * 180.26999 * 15 5 4 28 28 H 1.07999 * 119.84897 * 180.02562 * 16 15 5 29 29 H 1.07998 * 119.69747 * 180.02562 * 17 16 15 30 30 H 1.08999 * 109.47397 * 269.97962 * 20 19 2 31 31 H 1.09004 * 109.46435 * 29.98118 * 20 19 2 32 32 H 1.08998 * 109.46601 * 149.97383 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2859 1.0845 0.0000 4 6 3.5567 0.7074 0.0055 5 6 4.7629 1.4363 -0.0004 6 6 4.7416 2.9432 -0.0004 7 6 4.6106 3.4437 1.4151 8 1 4.5494 2.7409 2.2328 9 6 4.5701 4.7988 1.6661 10 7 4.6452 5.6546 0.6703 11 14 4.4085 5.4191 3.4207 12 1 5.7603 5.6028 4.0072 13 1 3.6876 6.7175 3.4223 14 1 3.6490 4.4304 4.2273 15 6 5.9465 0.7660 -0.0004 16 6 5.9506 -0.6388 -0.0001 17 6 4.7874 -1.3230 -0.0003 18 7 3.5928 -0.6629 -0.0004 19 6 2.2952 -1.0973 -0.0005 20 6 1.8320 -2.5314 -0.0017 21 1 -0.3633 0.0000 1.0276 22 1 -0.3633 0.8900 -0.5138 23 1 -0.3632 -0.8900 -0.5138 24 1 3.8947 3.2946 -0.5898 25 1 5.6678 3.3196 -0.4347 26 1 4.6162 6.6079 0.8470 27 1 6.8787 1.3112 -0.0005 28 1 6.8889 -1.1736 0.0004 29 1 4.8019 -2.4029 0.0003 30 1 1.7203 -2.8780 1.0257 31 1 0.8734 -2.6030 -0.5157 32 1 2.5672 -3.1502 -0.5161 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261254386.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:05 Heat of formation + Delta-G solvation = 49.287644 kcal Electronic energy + Delta-G solvation = -15484.675701 eV Core-core repulsion = 13023.982203 eV Total energy + Delta-G solvation = -2460.693498 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.68347 -38.55915 -36.09247 -34.48176 -33.16821 -32.05455 -29.52404 -28.67470 -26.95768 -25.29824 -23.31057 -22.41327 -20.80975 -18.57839 -18.05808 -17.75921 -16.96444 -16.65886 -16.14554 -15.02735 -14.54496 -14.51504 -14.10883 -13.96843 -13.79550 -13.72030 -13.39098 -13.07609 -12.93777 -12.82829 -12.51216 -12.45029 -12.26777 -11.93940 -11.67804 -11.11602 -10.78282 -10.61615 -9.40260 -8.51674 -8.18352 -6.33644 0.01640 0.41448 1.34055 1.37400 1.48186 1.78751 1.97205 2.36783 2.73186 3.09128 3.45628 3.60119 3.89160 4.09016 4.20012 4.29711 4.35753 4.57027 4.70830 4.74049 4.87956 5.00707 5.02569 5.08334 5.14195 5.26178 5.27445 5.35512 5.66152 5.70796 5.79198 5.87831 6.14330 6.35934 6.74838 7.12760 7.32847 8.88598 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.026956 B = 0.008130 C = 0.006911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.497216 B = 3443.337840 C = 4050.417197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.015 3.985 3 N -0.534 5.534 4 C 0.201 3.799 5 C -0.043 4.043 6 C 0.075 3.925 7 C -0.518 4.518 8 H 0.043 0.957 9 C 0.005 3.995 10 N -0.929 5.929 11 Si 0.966 3.034 12 H -0.262 1.262 13 H -0.277 1.277 14 H -0.275 1.275 15 C -0.130 4.130 16 C -0.121 4.121 17 C 0.020 3.980 18 N -0.361 5.361 19 C -0.080 4.080 20 C -0.058 4.058 21 H 0.077 0.923 22 H 0.058 0.942 23 H 0.106 0.894 24 H -0.006 1.006 25 H 0.017 0.983 26 H 0.266 0.734 27 H 0.144 0.856 28 H 0.195 0.805 29 H 0.205 0.795 30 H 0.082 0.918 31 H 0.101 0.899 32 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.758 -19.317 -1.065 19.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.118 4.118 3 N -0.255 5.255 4 C -0.041 4.041 5 C -0.045 4.045 6 C 0.037 3.963 7 C -0.556 4.556 8 H 0.061 0.939 9 C -0.193 4.193 10 N -0.569 5.569 11 Si 0.790 3.210 12 H -0.187 1.187 13 H -0.202 1.202 14 H -0.200 1.200 15 C -0.153 4.153 16 C -0.141 4.141 17 C -0.100 4.100 18 N -0.033 5.033 19 C -0.193 4.193 20 C -0.116 4.116 21 H 0.096 0.904 22 H 0.077 0.923 23 H 0.124 0.876 24 H 0.013 0.987 25 H 0.036 0.964 26 H 0.075 0.925 27 H 0.162 0.838 28 H 0.212 0.788 29 H 0.222 0.778 30 H 0.100 0.900 31 H 0.119 0.881 32 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.076 -18.401 -1.118 18.551 hybrid contribution 0.237 0.537 0.665 0.887 sum -1.840 -17.864 -0.453 17.964 Atomic orbital electron populations 1.20195 0.84913 1.03721 1.03147 1.21544 0.98521 0.87697 1.04083 1.70650 0.99959 1.31372 1.23550 1.20719 0.94073 0.81464 1.07887 1.19670 0.89688 0.97397 0.97786 1.17846 0.95819 0.86072 0.96547 1.21152 1.50474 0.91787 0.92222 0.93892 1.25886 0.94610 0.96881 1.01880 1.70076 1.51256 1.02495 1.33092 0.85439 0.78847 0.77562 0.79133 1.18678 1.20207 1.20024 1.21176 0.97059 0.95341 1.01759 1.21246 0.99039 0.92937 1.00848 1.22241 0.82067 1.00360 1.05337 1.42979 1.07088 1.07723 1.45503 1.21655 0.80668 0.99628 1.17371 1.20287 1.02771 0.84812 1.03715 0.90393 0.92318 0.87555 0.98744 0.96445 0.92500 0.83792 0.78807 0.77827 0.89954 0.88073 0.90070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.72 10.21 71.24 0.73 -0.99 16 2 C 0.01 0.55 7.06 41.58 0.29 0.85 16 3 N -0.53 -26.87 11.31 -182.40 -2.06 -28.93 16 4 C 0.20 9.59 7.54 134.11 1.01 10.60 16 5 C -0.04 -2.09 5.09 -19.72 -0.10 -2.19 16 6 C 0.07 4.38 5.12 29.10 0.15 4.53 16 7 C -0.52 -32.12 9.09 25.60 0.23 -31.89 16 8 H 0.04 2.67 7.74 -2.91 -0.02 2.65 16 9 C 0.01 0.33 5.46 84.66 0.46 0.79 16 10 N -0.93 -59.06 13.29 21.45 0.28 -58.77 16 11 Si 0.97 47.22 29.54 68.60 2.03 49.25 16 12 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 13 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 14 H -0.28 -13.37 7.11 99.48 0.71 -12.67 16 15 C -0.13 -4.86 9.70 22.30 0.22 -4.64 16 16 C -0.12 -3.18 9.99 22.06 0.22 -2.96 16 17 C 0.02 0.54 10.85 83.21 0.90 1.44 16 18 N -0.36 -13.04 2.95 -338.88 -1.00 -14.03 16 19 C -0.08 -2.55 7.03 41.06 0.29 -2.26 16 20 C -0.06 -1.03 10.09 71.24 0.72 -0.31 16 21 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 22 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 23 H 0.11 1.99 7.13 -2.39 -0.02 1.97 16 24 H -0.01 -0.38 8.13 -2.39 -0.02 -0.40 16 25 H 0.02 1.03 8.05 -2.39 -0.02 1.01 16 26 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 27 H 0.14 5.00 8.06 -2.91 -0.02 4.97 16 28 H 0.19 2.99 8.06 -2.91 -0.02 2.97 16 29 H 0.20 3.07 8.06 -2.91 -0.02 3.04 16 30 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.10 1.36 7.13 -2.39 -0.02 1.35 16 32 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -82.76 278.86 5.48 -77.28 By element: Atomic # 1 Polarization: 1.15 SS G_CDS: 1.11 Total: 2.26 kcal Atomic # 6 Polarization: -32.16 SS G_CDS: 5.12 Total: -27.04 kcal Atomic # 7 Polarization: -98.97 SS G_CDS: -2.78 Total: -101.74 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 2.03 Total: 49.25 kcal Total: -82.76 5.48 -77.28 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261254386.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.563 kcal (2) G-P(sol) polarization free energy of solvation -82.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds