Wall clock time and date at job start Mon Mar 30 2020 03:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00078 * 2 1 4 4 H 1.48495 * 109.47019 * 239.99892 * 3 2 1 5 5 H 1.48500 * 109.47214 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46970 * 119.99886 * 3 2 1 7 7 C 1.37871 * 119.99749 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00091 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00327 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47496 * 180.02562 * 9 7 2 11 11 H 1.09003 * 109.46916 * 304.99727 * 10 9 7 12 12 N 1.46900 * 109.47322 * 65.00002 * 10 9 7 13 13 C 1.50702 * 109.47290 * 185.00192 * 10 9 7 14 14 C 1.36670 * 120.11628 * 264.97355 * 13 10 9 15 15 C 1.38788 * 120.52797 * 180.02562 * 14 13 10 16 16 C 1.37789 * 120.66660 * 359.95958 * 15 14 13 17 17 C 1.39089 * 119.77888 * 0.04206 * 16 15 14 18 18 N 1.37694 * 133.51326 * 180.02562 * 17 16 15 19 19 H 0.97000 * 125.06246 * 359.93571 * 18 17 16 20 20 C 1.36837 * 109.87181 * 179.97438 * 18 17 16 21 21 C 1.34233 * 109.93996 * 0.26491 * 20 18 17 22 22 C 1.39586 * 120.11960 * 84.99718 * 13 10 9 23 23 H 0.97001 * 119.99754 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47131 * 60.00195 * 9 7 2 25 25 H 1.09008 * 109.47239 * 300.00517 * 9 7 2 26 26 H 1.00901 * 110.99803 * 296.04530 * 12 10 9 27 27 H 1.00893 * 111.00416 * 60.00193 * 12 10 9 28 28 H 1.08000 * 119.73253 * 0.02562 * 14 13 10 29 29 H 1.07996 * 119.66250 * 179.97438 * 15 14 13 30 30 H 1.07998 * 120.11182 * 180.02562 * 16 15 14 31 31 H 1.08002 * 125.02608 * 179.97438 * 20 18 17 32 32 H 1.07997 * 126.50049 * 179.70970 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 1 2.9292 -3.5552 -0.8424 12 7 3.0082 -3.6540 1.2547 13 6 1.4957 -4.9636 -0.1244 14 6 1.1662 -5.6745 0.9954 15 6 0.4766 -6.8744 0.8912 16 6 0.1111 -7.3702 -0.3413 17 6 0.4361 -6.6634 -1.4943 18 7 0.2186 -6.8857 -2.8356 19 1 -0.2436 -7.6542 -3.2053 20 6 0.7523 -5.8614 -3.5695 21 6 1.3258 -4.9636 -2.7528 22 6 1.1360 -5.4477 -1.3833 23 1 -0.4850 0.8401 -0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6246 -2.5571 0.8897 26 1 3.5700 -2.8193 1.3309 27 1 2.3961 -3.7518 2.0507 28 1 1.4448 -5.2995 1.9691 29 1 0.2238 -7.4249 1.7853 30 1 -0.4257 -8.3047 -0.4120 31 1 0.7211 -5.7887 -4.6466 32 1 1.8296 -4.0555 -3.0491 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261256812.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:39 Heat of formation + Delta-G solvation = 47.804218 kcal Electronic energy + Delta-G solvation = -15415.070123 eV Core-core repulsion = 12954.312299 eV Total energy + Delta-G solvation = -2460.757825 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.81827 -37.22058 -34.90086 -32.45394 -31.05778 -28.84487 -28.32139 -27.79596 -24.44837 -22.19027 -21.36050 -20.53080 -19.51957 -17.40060 -16.34580 -15.66571 -15.14571 -14.72409 -14.57987 -14.05160 -13.79806 -12.86363 -12.67162 -12.53630 -12.44606 -12.11744 -11.73017 -11.24612 -11.11303 -10.90710 -10.78025 -10.39809 -10.15113 -9.84143 -9.15659 -9.02796 -8.40002 -7.79472 -7.72314 -7.13837 -6.02127 -4.06567 1.59177 2.13177 3.12485 3.31448 3.36347 3.38426 3.44406 4.38324 4.45754 5.12352 5.17813 5.32190 5.43265 5.53852 5.65914 5.84913 5.90680 6.06107 6.24919 6.34566 6.52605 6.58609 6.83660 6.94521 7.10468 7.13722 7.33862 7.56768 7.62169 7.69122 7.84911 7.93095 8.16746 8.29128 8.41817 9.00377 9.57901 11.08351 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.032355 B = 0.007092 C = 0.006380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.180498 B = 3947.395369 C = 4387.831354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.525 4.525 8 H 0.056 0.944 9 C 0.004 3.996 10 C 0.125 3.875 11 H 0.077 0.923 12 N -0.841 5.841 13 C 0.003 3.997 14 C -0.147 4.147 15 C -0.093 4.093 16 C -0.155 4.155 17 C 0.094 3.906 18 N -0.603 5.603 19 H 0.409 0.591 20 C 0.029 3.971 21 C -0.183 4.183 22 C -0.105 4.105 23 H 0.261 0.739 24 H 0.022 0.978 25 H 0.015 0.985 26 H 0.345 0.655 27 H 0.329 0.671 28 H 0.122 0.878 29 H 0.118 0.882 30 H 0.110 0.890 31 H 0.165 0.835 32 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.442 -12.936 -3.348 13.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.142 4.142 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.563 4.563 8 H 0.074 0.926 9 C -0.034 4.034 10 C 0.014 3.986 11 H 0.095 0.905 12 N -0.370 5.370 13 C 0.002 3.998 14 C -0.166 4.166 15 C -0.112 4.112 16 C -0.176 4.176 17 C -0.012 4.012 18 N -0.207 5.207 19 H 0.245 0.755 20 C -0.096 4.096 21 C -0.208 4.208 22 C -0.110 4.110 23 H 0.071 0.929 24 H 0.040 0.960 25 H 0.034 0.966 26 H 0.158 0.842 27 H 0.141 0.859 28 H 0.140 0.860 29 H 0.136 0.864 30 H 0.128 0.872 31 H 0.182 0.818 32 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 0.599 -13.541 -3.722 14.056 hybrid contribution -0.512 1.532 -0.069 1.617 sum 0.087 -12.009 -3.790 12.593 Atomic orbital electron populations 1.69975 1.06083 1.26723 1.50185 1.25012 0.94804 0.99210 0.95174 0.86660 0.79558 0.83149 0.78640 1.20218 1.21355 1.20220 1.21144 0.92834 0.90883 1.51416 0.92603 1.19742 0.94361 0.91381 0.97914 1.20475 0.94598 0.90873 0.92638 0.90486 1.59296 1.28019 1.45679 1.03964 1.19369 0.94545 0.95211 0.90693 1.20420 1.01911 0.95761 0.98528 1.20734 0.98288 0.96267 0.95959 1.19811 1.06851 1.00719 0.90213 1.18218 1.01651 0.97105 0.84269 1.41673 1.52248 1.22272 1.04483 0.75534 1.21679 1.01157 0.89824 0.96939 1.21810 1.06955 1.01224 0.90809 1.19007 1.03307 0.95265 0.93443 0.92928 0.95977 0.96623 0.84186 0.85939 0.86027 0.86403 0.87151 0.81794 0.83551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.72 13.29 55.43 0.74 -25.99 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.52 -14.43 8.55 -34.44 -0.29 -14.72 16 8 H 0.06 1.47 7.14 -52.49 -0.37 1.10 16 9 C 0.00 0.12 4.60 -27.89 -0.13 -0.01 16 10 C 0.13 2.71 2.91 -68.87 -0.20 2.51 16 11 H 0.08 1.72 8.04 -51.93 -0.42 1.30 16 12 N -0.84 -16.39 8.79 -5.65 -0.05 -16.44 16 13 C 0.00 0.06 5.05 -104.69 -0.53 -0.47 16 14 C -0.15 -2.64 9.22 -39.94 -0.37 -3.01 16 15 C -0.09 -1.45 10.01 -39.54 -0.40 -1.85 16 16 C -0.15 -2.35 10.08 -39.43 -0.40 -2.74 16 17 C 0.09 1.56 7.28 -83.98 -0.61 0.95 16 18 N -0.60 -8.02 6.07 -10.65 -0.06 -8.09 16 19 H 0.41 3.87 8.96 -40.82 -0.37 3.50 16 20 C 0.03 0.39 11.81 -16.73 -0.20 0.19 16 21 C -0.18 -3.17 10.87 -37.67 -0.41 -3.58 16 22 C -0.11 -2.02 6.15 -105.14 -0.65 -2.67 16 23 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 24 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.02 0.43 8.14 -51.92 -0.42 0.01 16 26 H 0.34 6.79 7.90 -39.29 -0.31 6.48 16 27 H 0.33 6.10 7.21 -39.30 -0.28 5.82 16 28 H 0.12 2.06 6.25 -52.49 -0.33 1.73 16 29 H 0.12 1.47 8.06 -52.49 -0.42 1.04 16 30 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 31 H 0.16 1.58 8.06 -52.49 -0.42 1.16 16 32 H 0.15 2.52 8.06 -52.49 -0.42 2.10 16 LS Contribution 273.32 15.07 4.12 4.12 Total: -1.00 -31.80 273.32 -8.31 -40.11 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: -3.75 Total: 13.69 kcal Atomic # 6 Polarization: -19.53 SS G_CDS: -4.28 Total: -23.81 kcal Atomic # 7 Polarization: -51.14 SS G_CDS: 0.62 Total: -50.52 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -31.80 -8.31 -40.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261256812.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.915 kcal (2) G-P(sol) polarization free energy of solvation -31.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds