Wall clock time and date at job start Mon Mar 30 2020 03:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00078 * 2 1 4 4 H 1.48495 * 109.47019 * 239.99892 * 3 2 1 5 5 H 1.48500 * 109.47214 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46970 * 119.99886 * 3 2 1 7 7 C 1.37871 * 119.99749 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00091 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00327 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47496 * 180.02562 * 9 7 2 11 11 H 1.09003 * 109.46916 * 304.99727 * 10 9 7 12 12 N 1.46900 * 109.47322 * 65.00002 * 10 9 7 13 13 C 1.50702 * 109.47290 * 185.00192 * 10 9 7 14 14 C 1.36670 * 120.11628 * 264.97355 * 13 10 9 15 15 C 1.38788 * 120.52797 * 180.02562 * 14 13 10 16 16 C 1.37789 * 120.66660 * 359.95958 * 15 14 13 17 17 C 1.39089 * 119.77888 * 0.04206 * 16 15 14 18 18 N 1.37694 * 133.51326 * 180.02562 * 17 16 15 19 19 H 0.97000 * 125.06246 * 359.93571 * 18 17 16 20 20 C 1.36837 * 109.87181 * 179.97438 * 18 17 16 21 21 C 1.34233 * 109.93996 * 0.26491 * 20 18 17 22 22 C 1.39586 * 120.11960 * 84.99718 * 13 10 9 23 23 H 0.97001 * 119.99754 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47131 * 60.00195 * 9 7 2 25 25 H 1.09008 * 109.47239 * 300.00517 * 9 7 2 26 26 H 1.00901 * 110.99803 * 296.04530 * 12 10 9 27 27 H 1.00893 * 111.00416 * 60.00193 * 12 10 9 28 28 H 1.08000 * 119.73253 * 0.02562 * 14 13 10 29 29 H 1.07996 * 119.66250 * 179.97438 * 15 14 13 30 30 H 1.07998 * 120.11182 * 180.02562 * 16 15 14 31 31 H 1.08002 * 125.02608 * 179.97438 * 20 18 17 32 32 H 1.07997 * 126.50049 * 179.70970 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 1 2.9292 -3.5552 -0.8424 12 7 3.0082 -3.6540 1.2547 13 6 1.4957 -4.9636 -0.1244 14 6 1.1662 -5.6745 0.9954 15 6 0.4766 -6.8744 0.8912 16 6 0.1111 -7.3702 -0.3413 17 6 0.4361 -6.6634 -1.4943 18 7 0.2186 -6.8857 -2.8356 19 1 -0.2436 -7.6542 -3.2053 20 6 0.7523 -5.8614 -3.5695 21 6 1.3258 -4.9636 -2.7528 22 6 1.1360 -5.4477 -1.3833 23 1 -0.4850 0.8401 -0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6246 -2.5571 0.8897 26 1 3.5700 -2.8193 1.3309 27 1 2.3961 -3.7518 2.0507 28 1 1.4448 -5.2995 1.9691 29 1 0.2238 -7.4249 1.7853 30 1 -0.4257 -8.3047 -0.4120 31 1 0.7211 -5.7887 -4.6466 32 1 1.8296 -4.0555 -3.0491 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261256812.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:39 Heat of formation + Delta-G solvation = 26.158157 kcal Electronic energy + Delta-G solvation = -15416.008767 eV Core-core repulsion = 12954.312299 eV Total energy + Delta-G solvation = -2461.696468 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.04691 -38.66397 -36.48599 -34.50277 -32.39213 -30.26563 -29.76600 -29.51507 -26.28146 -23.83061 -22.63116 -21.96707 -20.93493 -18.97687 -18.17987 -16.93481 -16.62193 -16.51395 -16.20631 -15.31814 -15.17668 -14.52103 -14.34587 -14.16192 -13.90442 -13.66576 -13.32369 -12.96248 -12.75481 -12.53394 -12.35132 -12.13106 -11.83066 -11.72096 -11.08072 -10.62852 -10.41812 -9.43078 -9.03799 -8.45400 -8.19792 -6.33831 0.32024 0.81464 1.39362 1.42255 1.50076 1.90642 2.36267 2.39219 3.06364 3.11509 3.77707 4.08543 4.13948 4.25731 4.38159 4.49957 4.57932 4.69530 4.84224 4.93984 5.04418 5.17227 5.28484 5.38288 5.50837 5.67470 5.74681 5.83745 5.86181 5.99598 6.16247 6.34917 6.43414 6.73504 6.82262 6.86443 7.35859 8.90267 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.032355 B = 0.007092 C = 0.006380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.180498 B = 3947.395369 C = 4387.831354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.967 3.033 4 H -0.268 1.268 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.538 4.538 8 H 0.065 0.935 9 C 0.021 3.979 10 C 0.143 3.857 11 H 0.061 0.939 12 N -0.828 5.828 13 C -0.040 4.040 14 C -0.154 4.154 15 C -0.102 4.102 16 C -0.141 4.141 17 C 0.079 3.921 18 N -0.585 5.585 19 H 0.432 0.568 20 C 0.067 3.933 21 C -0.241 4.241 22 C -0.138 4.138 23 H 0.263 0.737 24 H -0.016 1.016 25 H -0.014 1.014 26 H 0.343 0.657 27 H 0.335 0.665 28 H 0.124 0.876 29 H 0.153 0.847 30 H 0.151 0.849 31 H 0.212 0.788 32 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.469 -14.512 -3.879 15.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.196 4.196 3 Si 0.791 3.209 4 H -0.193 1.193 5 H -0.211 1.211 6 H -0.188 1.188 7 C -0.576 4.576 8 H 0.083 0.917 9 C -0.018 4.018 10 C 0.031 3.969 11 H 0.079 0.921 12 N -0.356 5.356 13 C -0.041 4.041 14 C -0.173 4.173 15 C -0.121 4.121 16 C -0.161 4.161 17 C -0.029 4.029 18 N -0.190 5.190 19 H 0.272 0.728 20 C -0.059 4.059 21 C -0.266 4.266 22 C -0.143 4.143 23 H 0.071 0.929 24 H 0.002 0.998 25 H 0.004 0.996 26 H 0.156 0.844 27 H 0.147 0.853 28 H 0.142 0.858 29 H 0.171 0.829 30 H 0.168 0.832 31 H 0.229 0.771 32 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 0.626 -15.161 -4.249 15.758 hybrid contribution -0.578 1.922 0.039 2.008 sum 0.049 -13.239 -4.210 13.892 Atomic orbital electron populations 1.70128 1.07966 1.27765 1.51335 1.25980 0.95665 1.03359 0.94582 0.85480 0.78185 0.77977 0.79267 1.19300 1.21120 1.18844 1.21533 0.93413 0.91744 1.50911 0.91735 1.19538 0.94362 0.93374 0.94511 1.20093 0.93281 0.90705 0.92811 0.92083 1.59282 1.27563 1.45282 1.03495 1.19334 0.97125 0.95346 0.92344 1.20633 1.02031 0.96769 0.97916 1.21109 0.97682 0.95482 0.97782 1.20294 1.05108 1.01420 0.89291 1.18456 1.01786 0.96528 0.86087 1.41685 1.51294 1.22706 1.03306 0.72833 1.22265 0.97300 0.87833 0.98524 1.21885 1.10648 1.02773 0.91337 1.19389 1.04219 0.96933 0.93779 0.92862 0.99800 0.99550 0.84380 0.85262 0.85833 0.82902 0.83161 0.77136 0.85211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.73 13.29 21.45 0.28 -57.45 16 2 C 0.00 0.13 5.46 84.65 0.46 0.59 16 3 Si 0.97 44.49 29.54 68.60 2.03 46.52 16 4 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 5 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 6 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 7 C -0.54 -30.63 8.55 25.60 0.22 -30.41 16 8 H 0.06 3.48 7.14 -2.91 -0.02 3.46 16 9 C 0.02 1.15 4.60 29.85 0.14 1.28 16 10 C 0.14 6.52 2.91 44.17 0.13 6.65 16 11 H 0.06 2.92 8.04 -2.39 -0.02 2.90 16 12 N -0.83 -33.32 8.79 -171.80 -1.51 -34.83 16 13 C -0.04 -1.69 5.05 -19.91 -0.10 -1.79 16 14 C -0.15 -5.59 9.22 22.03 0.20 -5.38 16 15 C -0.10 -2.96 10.01 22.29 0.22 -2.73 16 16 C -0.14 -3.85 10.08 22.37 0.23 -3.62 16 17 C 0.08 2.49 7.28 39.03 0.28 2.77 16 18 N -0.58 -13.84 6.07 -187.60 -1.14 -14.98 16 19 H 0.43 6.34 8.96 -92.71 -0.83 5.51 16 20 C 0.07 1.70 11.81 83.00 0.98 2.68 16 21 C -0.24 -8.63 10.87 23.51 0.26 -8.37 16 22 C -0.14 -5.44 6.15 -20.20 -0.12 -5.56 16 23 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 24 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 25 H -0.01 -0.83 8.14 -2.38 -0.02 -0.85 16 26 H 0.34 13.84 7.90 -89.69 -0.71 13.13 16 27 H 0.33 12.81 7.21 -89.70 -0.65 12.17 16 28 H 0.12 4.24 6.25 -2.91 -0.02 4.22 16 29 H 0.15 3.29 8.06 -2.91 -0.02 3.26 16 30 H 0.15 2.87 8.06 -2.91 -0.02 2.85 16 31 H 0.21 3.21 8.06 -2.91 -0.02 3.19 16 32 H 0.13 4.87 8.06 -2.91 -0.02 4.84 16 Total: -1.00 -72.23 273.32 1.53 -70.71 By element: Atomic # 1 Polarization: 34.95 SS G_CDS: -1.03 Total: 33.92 kcal Atomic # 6 Polarization: -46.79 SS G_CDS: 2.89 Total: -43.89 kcal Atomic # 7 Polarization: -104.89 SS G_CDS: -2.36 Total: -107.25 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -72.23 1.53 -70.71 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261256812.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.863 kcal (2) G-P(sol) polarization free energy of solvation -72.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds