Wall clock time and date at job start Mon Mar 30 2020 03:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86795 * 119.99985 * 2 1 4 4 H 1.48500 * 109.46923 * 270.00155 * 3 2 1 5 5 H 1.48497 * 109.47085 * 30.00151 * 3 2 1 6 6 H 1.48502 * 109.47212 * 150.00477 * 3 2 1 7 7 C 1.37885 * 119.99794 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99784 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99832 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.46927 * 179.97438 * 9 7 2 11 11 H 1.08995 * 109.46996 * 55.00089 * 10 9 7 12 12 N 1.46896 * 109.47380 * 294.99542 * 10 9 7 13 13 C 1.50703 * 109.46748 * 174.99459 * 10 9 7 14 14 C 1.36670 * 120.11550 * 100.04524 * 13 10 9 15 15 C 1.38790 * 120.52596 * 180.02562 * 14 13 10 16 16 C 1.37785 * 120.66953 * 359.94531 * 15 14 13 17 17 C 1.39088 * 119.77670 * 0.02562 * 16 15 14 18 18 N 1.37696 * 133.51355 * 179.97438 * 17 16 15 19 19 H 0.96993 * 125.06693 * 0.05999 * 18 17 16 20 20 C 1.36841 * 109.86869 * 179.80357 * 18 17 16 21 21 C 1.34228 * 109.94158 * 0.38290 * 20 18 17 22 22 C 1.39589 * 120.12271 * 280.00109 * 13 10 9 23 23 H 0.96997 * 119.99706 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.47371 * 59.99359 * 9 7 2 25 25 H 1.09004 * 109.47092 * 299.99580 * 9 7 2 26 26 H 1.00892 * 110.99917 * 176.04818 * 12 10 9 27 27 H 1.00900 * 110.99823 * 300.00785 * 12 10 9 28 28 H 1.08004 * 119.73358 * 0.02562 * 14 13 10 29 29 H 1.07997 * 119.65997 * 179.97438 * 15 14 13 30 30 H 1.07996 * 120.11052 * 180.02562 * 16 15 14 31 31 H 1.08006 * 125.02684 * 180.27912 * 20 18 17 32 32 H 1.08002 * 126.50417 * 179.89956 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0001 11 1 3.5871 -3.1754 -0.8422 12 7 3.6324 -3.2937 1.2548 13 6 5.5234 -2.6384 -0.1235 14 6 6.3024 -2.8117 0.9860 15 6 7.6864 -2.8143 0.8823 16 6 8.2999 -2.6434 -0.3396 17 6 7.5266 -2.4660 -1.4820 18 7 7.8295 -2.2748 -2.8115 19 1 8.7264 -2.2334 -3.1784 20 6 6.6764 -2.1578 -3.5390 21 6 5.6114 -2.2576 -2.7281 22 6 6.1240 -2.4639 -1.3714 23 1 -0.4849 0.8400 0.0004 24 1 3.8745 -0.6808 0.8904 25 1 3.8752 -0.6798 -0.8895 26 1 3.9014 -4.2661 1.2523 27 1 4.0230 -2.8125 2.0511 28 1 5.8372 -2.9478 1.9512 29 1 8.2885 -2.9520 1.7682 30 1 9.3776 -2.6474 -0.4099 31 1 6.6301 -2.0059 -4.6073 32 1 4.5734 -2.2014 -3.0210 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261256822.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:41 Heat of formation + Delta-G solvation = 56.993371 kcal Electronic energy + Delta-G solvation = -15494.628129 eV Core-core repulsion = 13034.268776 eV Total energy + Delta-G solvation = -2460.359353 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.02645 -37.49798 -34.95629 -32.33315 -31.17686 -29.21998 -28.54223 -28.34535 -24.41367 -22.07394 -21.48743 -20.50731 -19.61510 -17.54296 -16.50456 -15.84901 -15.34038 -15.25108 -14.33023 -14.13394 -13.86071 -13.50763 -12.96188 -12.82818 -12.45849 -12.28533 -11.63068 -11.43911 -11.23188 -11.02429 -10.73516 -10.31334 -10.07346 -9.61128 -9.14863 -9.02597 -8.38742 -8.01864 -7.89910 -7.39276 -5.87128 -3.81268 1.36675 1.87308 2.94992 3.27135 3.39776 3.47025 3.52329 4.15620 4.58727 4.94294 5.02472 5.20930 5.33156 5.35860 5.50464 5.55888 5.70532 5.85170 6.01709 6.17949 6.29287 6.36266 6.59537 6.68880 6.91930 6.92741 7.07022 7.22686 7.39258 7.46091 7.67071 7.88576 8.04679 8.21300 8.75820 9.25857 9.75852 11.26740 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.027382 B = 0.008193 C = 0.007344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.321432 B = 3416.623415 C = 3811.724946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.062 3.938 3 Si 0.872 3.128 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.268 1.268 7 C -0.491 4.491 8 H 0.080 0.920 9 C 0.003 3.997 10 C 0.142 3.858 11 H 0.085 0.915 12 N -0.821 5.821 13 C -0.046 4.046 14 C -0.166 4.166 15 C -0.091 4.091 16 C -0.151 4.151 17 C 0.095 3.905 18 N -0.602 5.602 19 H 0.410 0.590 20 C 0.032 3.968 21 C -0.184 4.184 22 C -0.103 4.103 23 H 0.259 0.741 24 H 0.013 0.987 25 H 0.017 0.983 26 H 0.325 0.675 27 H 0.334 0.666 28 H 0.119 0.881 29 H 0.119 0.881 30 H 0.112 0.888 31 H 0.167 0.833 32 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.710 -5.461 -3.693 18.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.137 4.137 3 Si 0.700 3.300 4 H -0.205 1.205 5 H -0.216 1.216 6 H -0.193 1.193 7 C -0.530 4.530 8 H 0.098 0.902 9 C -0.034 4.034 10 C 0.030 3.970 11 H 0.103 0.897 12 N -0.348 5.348 13 C -0.049 4.049 14 C -0.185 4.185 15 C -0.110 4.110 16 C -0.172 4.172 17 C -0.012 4.012 18 N -0.205 5.205 19 H 0.246 0.754 20 C -0.093 4.093 21 C -0.209 4.209 22 C -0.108 4.108 23 H 0.069 0.931 24 H 0.032 0.968 25 H 0.035 0.965 26 H 0.136 0.864 27 H 0.148 0.852 28 H 0.137 0.863 29 H 0.137 0.863 30 H 0.131 0.869 31 H 0.184 0.816 32 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 16.866 -5.142 -3.976 18.075 hybrid contribution 1.965 0.940 -0.098 2.180 sum 18.830 -4.202 -4.074 19.719 Atomic orbital electron populations 1.69913 1.06108 1.26362 1.52410 1.24989 0.94657 0.98667 0.95402 0.86910 0.80386 0.84418 0.78319 1.20539 1.21615 1.19287 1.21067 0.88830 0.94529 1.48538 0.90157 1.19574 0.97666 0.89830 0.96360 1.20497 0.85183 0.98678 0.92603 0.89713 1.58776 1.67217 1.04967 1.03852 1.20644 0.99065 0.94163 0.91046 1.20475 0.93410 1.06357 0.98275 1.20703 0.94610 0.99577 0.96127 1.19853 0.98120 1.08671 0.90529 1.18293 0.94677 1.03538 0.84712 1.41720 1.08177 1.65128 1.05520 0.75400 1.21751 0.84715 1.05574 0.97245 1.21894 0.98899 1.09179 0.90942 1.19052 0.91553 1.06406 0.93812 0.93070 0.96825 0.96480 0.86358 0.85231 0.86319 0.86260 0.86950 0.81557 0.83115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.73 13.96 55.43 0.77 -27.95 16 2 C 0.06 1.87 5.47 -17.82 -0.10 1.77 16 3 Si 0.87 22.52 27.47 -169.99 -4.67 17.85 16 4 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 5 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 6 H -0.27 -6.77 6.54 56.52 0.37 -6.40 16 7 C -0.49 -14.27 9.39 -34.44 -0.32 -14.60 16 8 H 0.08 2.54 7.99 -52.48 -0.42 2.12 16 9 C 0.00 0.08 3.67 -27.89 -0.10 -0.02 16 10 C 0.14 2.91 2.84 -68.87 -0.20 2.72 16 11 H 0.08 1.81 8.14 -51.93 -0.42 1.39 16 12 N -0.82 -15.48 8.42 -5.66 -0.05 -15.52 16 13 C -0.05 -0.84 5.07 -104.68 -0.53 -1.37 16 14 C -0.17 -2.63 9.20 -39.94 -0.37 -3.00 16 15 C -0.09 -1.26 10.01 -39.54 -0.40 -1.65 16 16 C -0.15 -2.05 10.08 -39.43 -0.40 -2.45 16 17 C 0.09 1.43 7.28 -83.99 -0.61 0.82 16 18 N -0.60 -7.25 6.07 -10.65 -0.06 -7.31 16 19 H 0.41 3.41 8.96 -40.82 -0.37 3.05 16 20 C 0.03 0.40 11.81 -16.73 -0.20 0.20 16 21 C -0.18 -2.96 10.94 -37.67 -0.41 -3.37 16 22 C -0.10 -1.81 6.16 -105.14 -0.65 -2.46 16 23 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 24 H 0.01 0.34 7.20 -51.93 -0.37 -0.03 16 25 H 0.02 0.43 7.57 -51.93 -0.39 0.03 16 26 H 0.33 5.19 9.05 -39.30 -0.36 4.84 16 27 H 0.33 5.90 7.29 -39.29 -0.29 5.61 16 28 H 0.12 1.71 6.20 -52.48 -0.33 1.38 16 29 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 30 H 0.11 1.20 8.06 -52.49 -0.42 0.78 16 31 H 0.17 1.43 8.06 -52.48 -0.42 1.01 16 32 H 0.15 2.43 8.06 -52.49 -0.42 2.01 16 LS Contribution 271.53 15.07 4.09 4.09 Total: -1.00 -33.92 271.53 -7.99 -41.92 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -3.80 Total: 10.34 kcal Atomic # 6 Polarization: -19.13 SS G_CDS: -4.28 Total: -23.41 kcal Atomic # 7 Polarization: -51.45 SS G_CDS: 0.66 Total: -50.79 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -4.67 Total: 17.85 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -33.92 -7.99 -41.92 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261256822.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.913 kcal (2) G-P(sol) polarization free energy of solvation -33.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds