Wall clock time and date at job start Mon Mar 30 2020 03:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86795 * 119.99985 * 2 1 4 4 H 1.48500 * 109.46923 * 270.00155 * 3 2 1 5 5 H 1.48497 * 109.47085 * 30.00151 * 3 2 1 6 6 H 1.48502 * 109.47212 * 150.00477 * 3 2 1 7 7 C 1.37885 * 119.99794 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99784 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99832 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.46927 * 179.97438 * 9 7 2 11 11 H 1.08995 * 109.46996 * 55.00089 * 10 9 7 12 12 N 1.46896 * 109.47380 * 294.99542 * 10 9 7 13 13 C 1.50703 * 109.46748 * 174.99459 * 10 9 7 14 14 C 1.36670 * 120.11550 * 100.04524 * 13 10 9 15 15 C 1.38790 * 120.52596 * 180.02562 * 14 13 10 16 16 C 1.37785 * 120.66953 * 359.94531 * 15 14 13 17 17 C 1.39088 * 119.77670 * 0.02562 * 16 15 14 18 18 N 1.37696 * 133.51355 * 179.97438 * 17 16 15 19 19 H 0.96993 * 125.06693 * 0.05999 * 18 17 16 20 20 C 1.36841 * 109.86869 * 179.80357 * 18 17 16 21 21 C 1.34228 * 109.94158 * 0.38290 * 20 18 17 22 22 C 1.39589 * 120.12271 * 280.00109 * 13 10 9 23 23 H 0.96997 * 119.99706 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.47371 * 59.99359 * 9 7 2 25 25 H 1.09004 * 109.47092 * 299.99580 * 9 7 2 26 26 H 1.00892 * 110.99917 * 176.04818 * 12 10 9 27 27 H 1.00900 * 110.99823 * 300.00785 * 12 10 9 28 28 H 1.08004 * 119.73358 * 0.02562 * 14 13 10 29 29 H 1.07997 * 119.65997 * 179.97438 * 15 14 13 30 30 H 1.07996 * 120.11052 * 180.02562 * 16 15 14 31 31 H 1.08006 * 125.02684 * 180.27912 * 20 18 17 32 32 H 1.08002 * 126.50417 * 179.89956 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0001 11 1 3.5871 -3.1754 -0.8422 12 7 3.6324 -3.2937 1.2548 13 6 5.5234 -2.6384 -0.1235 14 6 6.3024 -2.8117 0.9860 15 6 7.6864 -2.8143 0.8823 16 6 8.2999 -2.6434 -0.3396 17 6 7.5266 -2.4660 -1.4820 18 7 7.8295 -2.2748 -2.8115 19 1 8.7264 -2.2334 -3.1784 20 6 6.6764 -2.1578 -3.5390 21 6 5.6114 -2.2576 -2.7281 22 6 6.1240 -2.4639 -1.3714 23 1 -0.4849 0.8400 0.0004 24 1 3.8745 -0.6808 0.8904 25 1 3.8752 -0.6798 -0.8895 26 1 3.9014 -4.2661 1.2523 27 1 4.0230 -2.8125 2.0511 28 1 5.8372 -2.9478 1.9512 29 1 8.2885 -2.9520 1.7682 30 1 9.3776 -2.6474 -0.4099 31 1 6.6301 -2.0059 -4.6073 32 1 4.5734 -2.2014 -3.0210 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261256822.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:40 Heat of formation + Delta-G solvation = 32.765952 kcal Electronic energy + Delta-G solvation = -15495.678708 eV Core-core repulsion = 13034.268776 eV Total energy + Delta-G solvation = -2461.409933 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.11982 -38.79545 -36.39803 -34.49620 -32.36970 -30.94460 -29.92829 -29.52709 -26.14474 -23.57831 -22.63879 -21.85429 -21.00691 -19.09171 -18.28855 -17.07928 -16.81777 -16.52719 -16.11455 -15.35932 -15.23478 -14.89904 -14.67517 -14.33570 -13.96070 -13.46143 -13.33200 -13.07859 -12.71452 -12.48180 -12.21637 -12.10060 -11.73636 -11.56612 -11.26149 -10.70815 -10.42861 -9.42025 -9.10986 -8.52498 -8.19908 -6.19373 0.23595 0.72290 1.34324 1.35883 1.48058 1.86424 2.32094 2.39785 2.97181 3.13502 3.79499 3.90208 4.07536 4.15677 4.33644 4.43795 4.49257 4.58647 4.78498 4.86484 4.97834 5.10123 5.20980 5.22095 5.44263 5.57991 5.69168 5.78505 5.81813 5.88275 6.28041 6.38426 6.53280 6.80992 6.81642 6.88985 7.41435 8.97376 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.027382 B = 0.008193 C = 0.007344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.321432 B = 3416.623415 C = 3811.724946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.002 3.998 3 Si 0.943 3.057 4 H -0.269 1.269 5 H -0.283 1.283 6 H -0.257 1.257 7 C -0.495 4.495 8 H 0.038 0.962 9 C 0.014 3.986 10 C 0.155 3.845 11 H 0.060 0.940 12 N -0.833 5.833 13 C -0.080 4.080 14 C -0.165 4.165 15 C -0.098 4.098 16 C -0.137 4.137 17 C 0.080 3.920 18 N -0.585 5.585 19 H 0.432 0.568 20 C 0.068 3.932 21 C -0.242 4.242 22 C -0.133 4.133 23 H 0.263 0.737 24 H 0.010 0.990 25 H 0.013 0.987 26 H 0.341 0.659 27 H 0.341 0.659 28 H 0.127 0.873 29 H 0.154 0.846 30 H 0.150 0.850 31 H 0.211 0.789 32 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.523 -4.798 -4.047 22.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.194 4.194 3 Si 0.767 3.233 4 H -0.194 1.194 5 H -0.209 1.209 6 H -0.181 1.181 7 C -0.533 4.533 8 H 0.056 0.944 9 C -0.024 4.024 10 C 0.043 3.957 11 H 0.078 0.922 12 N -0.363 5.363 13 C -0.083 4.083 14 C -0.185 4.185 15 C -0.117 4.117 16 C -0.158 4.158 17 C -0.028 4.028 18 N -0.190 5.190 19 H 0.272 0.728 20 C -0.058 4.058 21 C -0.267 4.267 22 C -0.138 4.138 23 H 0.072 0.928 24 H 0.028 0.972 25 H 0.031 0.969 26 H 0.154 0.846 27 H 0.156 0.844 28 H 0.145 0.855 29 H 0.171 0.829 30 H 0.167 0.833 31 H 0.227 0.773 32 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 20.727 -4.501 -4.333 21.648 hybrid contribution 0.801 0.627 -0.039 1.018 sum 21.528 -3.874 -4.373 22.306 Atomic orbital electron populations 1.70069 1.07990 1.27589 1.53959 1.25891 0.95527 1.02838 0.95114 0.85771 0.79218 0.79327 0.78944 1.19390 1.20906 1.18109 1.21282 0.91247 0.92980 1.47829 0.94387 1.19392 0.94470 0.92913 0.95611 1.20009 0.87549 0.95731 0.92370 0.92166 1.58672 1.67904 1.06129 1.03610 1.20346 0.97140 0.98149 0.92654 1.20698 0.94640 1.05351 0.97800 1.21081 0.93803 0.99106 0.97732 1.20322 0.99900 1.05899 0.89664 1.18511 0.93772 1.04099 0.86372 1.41734 1.09200 1.63586 1.04464 0.72837 1.22290 0.83657 1.01265 0.98618 1.21939 0.99379 1.13621 0.91735 1.19382 0.93400 1.07012 0.94053 0.92834 0.97219 0.96897 0.84551 0.84425 0.85538 0.82869 0.83277 0.77272 0.85014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -62.34 13.96 21.45 0.30 -62.04 16 2 C 0.00 0.10 5.47 84.66 0.46 0.57 16 3 Si 0.94 47.09 27.47 68.60 1.88 48.98 16 4 H -0.27 -12.88 7.11 99.48 0.71 -12.18 16 5 H -0.28 -13.76 7.11 99.48 0.71 -13.05 16 6 H -0.26 -12.28 6.54 99.48 0.65 -11.63 16 7 C -0.50 -30.04 9.39 25.60 0.24 -29.80 16 8 H 0.04 2.56 7.99 -2.91 -0.02 2.54 16 9 C 0.01 0.70 3.67 29.85 0.11 0.81 16 10 C 0.16 6.64 2.84 44.17 0.13 6.77 16 11 H 0.06 2.79 8.14 -2.39 -0.02 2.77 16 12 N -0.83 -32.42 8.42 -171.81 -1.45 -33.87 16 13 C -0.08 -2.92 5.07 -19.90 -0.10 -3.02 16 14 C -0.17 -5.02 9.20 22.03 0.20 -4.82 16 15 C -0.10 -2.39 10.01 22.29 0.22 -2.16 16 16 C -0.14 -3.19 10.08 22.37 0.23 -2.97 16 17 C 0.08 2.21 7.28 39.03 0.28 2.49 16 18 N -0.58 -11.96 6.07 -187.60 -1.14 -13.10 16 19 H 0.43 5.15 8.96 -92.71 -0.83 4.32 16 20 C 0.07 1.52 11.81 83.00 0.98 2.50 16 21 C -0.24 -7.80 10.94 23.51 0.26 -7.55 16 22 C -0.13 -4.64 6.16 -20.20 -0.12 -4.76 16 23 H 0.26 16.04 8.31 -92.71 -0.77 15.27 16 24 H 0.01 0.49 7.20 -2.39 -0.02 0.47 16 25 H 0.01 0.66 7.57 -2.38 -0.02 0.64 16 26 H 0.34 11.18 9.05 -89.70 -0.81 10.37 16 27 H 0.34 12.20 7.29 -89.69 -0.65 11.55 16 28 H 0.13 3.48 6.20 -2.91 -0.02 3.47 16 29 H 0.15 2.63 8.06 -2.91 -0.02 2.60 16 30 H 0.15 2.34 8.06 -2.91 -0.02 2.32 16 31 H 0.21 2.71 8.06 -2.91 -0.02 2.69 16 32 H 0.13 4.57 8.06 -2.91 -0.02 4.55 16 Total: -1.00 -76.58 271.53 1.29 -75.29 By element: Atomic # 1 Polarization: 27.88 SS G_CDS: -1.19 Total: 26.69 kcal Atomic # 6 Polarization: -44.83 SS G_CDS: 2.89 Total: -41.95 kcal Atomic # 7 Polarization: -106.73 SS G_CDS: -2.29 Total: -109.02 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 1.88 Total: 48.98 kcal Total: -76.58 1.29 -75.29 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261256822.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.059 kcal (2) G-P(sol) polarization free energy of solvation -76.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds