Wall clock time and date at job start Mon Mar 30 2020 03:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38832 * 119.73833 * 2 1 4 4 C 1.37743 * 120.66710 * 180.02562 * 3 2 1 5 5 C 1.39123 * 119.78222 * 359.97438 * 4 3 2 6 6 N 1.37691 * 133.51229 * 179.97438 * 5 4 3 7 7 H 0.96992 * 125.06607 * 0.02562 * 6 5 4 8 8 C 1.36837 * 109.87433 * 180.02562 * 6 5 4 9 9 C 1.34238 * 109.92812 * 0.02562 * 8 6 5 10 10 C 1.50705 * 126.49952 * 180.02562 * 9 8 6 11 11 H 1.08999 * 109.46769 * 219.97032 * 10 9 8 12 12 N 1.46902 * 109.46984 * 339.96643 * 10 9 8 13 13 C 1.50692 * 109.47418 * 99.96996 * 10 9 8 14 14 H 1.08001 * 119.99911 * 0.02562 * 13 10 9 15 15 C 1.37870 * 120.00154 * 179.97438 * 13 10 9 16 16 N 1.31515 * 119.99971 * 0.02562 * 15 13 10 17 17 Si 1.86802 * 120.00385 * 179.97438 * 15 13 10 18 18 H 1.48506 * 109.46875 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47364 * 119.99778 * 17 15 13 20 20 H 1.48498 * 109.47503 * 240.00563 * 17 15 13 21 21 C 1.40666 * 119.33037 * 0.02562 * 5 4 3 22 22 C 1.36625 * 119.73321 * 180.02562 * 2 1 3 23 23 H 1.09005 * 109.47488 * 269.97594 * 1 2 3 24 24 H 1.08995 * 109.47398 * 29.97847 * 1 2 3 25 25 H 1.09000 * 109.47498 * 149.97819 * 1 2 3 26 26 H 1.08002 * 119.66365 * 0.04210 * 3 2 1 27 27 H 1.08001 * 120.11179 * 179.97438 * 4 3 2 28 28 H 1.08000 * 125.03320 * 180.02562 * 8 6 5 29 29 H 1.00899 * 110.99669 * 60.00365 * 12 10 9 30 30 H 1.00896 * 110.99646 * 183.95680 * 12 10 9 31 31 H 0.97005 * 119.99994 * 179.97438 * 16 15 13 32 32 H 1.07997 * 120.12341 * 359.70643 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1956 1.2055 0.0000 4 6 3.5729 1.2278 -0.0005 5 6 4.2834 0.0317 -0.0005 6 7 5.6261 -0.2734 -0.0014 7 1 6.3454 0.3773 -0.0019 8 6 5.7946 -1.6314 -0.0015 9 6 4.5985 -2.2408 -0.0013 10 6 4.3498 -3.7272 -0.0007 11 1 3.5131 -3.9557 -0.6608 12 7 5.5524 -4.4250 -0.4750 13 6 4.0243 -4.1816 1.3987 14 1 3.9996 -3.4656 2.2069 15 6 3.7571 -5.5111 1.6472 16 7 3.7868 -6.3829 0.6630 17 14 3.3544 -6.0746 3.3821 18 1 3.3861 -4.9085 4.3011 19 1 2.0003 -6.6839 3.4029 20 1 4.3560 -7.0790 3.8215 21 6 3.5809 -1.1870 -0.0005 22 6 2.1846 -1.1864 -0.0005 23 1 -0.3634 -0.0004 1.0277 24 1 -0.3634 0.8901 -0.5135 25 1 -0.3634 -0.8898 -0.5142 26 1 1.6459 2.1351 0.0007 27 1 4.0995 2.1707 -0.0009 28 1 6.7485 -2.1377 -0.0017 29 1 6.3427 -4.2290 0.1209 30 1 5.3899 -5.4183 -0.5451 31 1 3.5991 -7.3184 0.8378 32 1 1.6423 -2.1203 0.0038 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261257876.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:05 Heat of formation + Delta-G solvation = 44.248657 kcal Electronic energy + Delta-G solvation = -15466.402882 eV Core-core repulsion = 13005.490877 eV Total energy + Delta-G solvation = -2460.912005 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.56672 -36.85690 -34.69871 -31.78856 -31.01748 -30.32519 -27.69386 -26.01015 -25.67719 -22.40311 -22.03841 -20.43185 -18.24235 -17.26602 -16.38390 -15.62089 -14.74978 -14.48135 -13.90934 -13.64170 -13.58849 -13.21953 -12.99312 -12.72536 -12.44404 -11.79630 -11.67187 -11.20472 -10.99026 -10.88141 -10.66376 -10.65027 -10.25489 -9.97778 -9.61231 -8.91677 -8.53990 -7.48571 -7.20727 -6.81430 -5.99539 -4.16425 1.74004 2.15400 3.24893 3.33542 3.38430 3.58107 3.76924 4.37781 4.50623 5.19642 5.21711 5.37713 5.48429 5.61549 5.83713 5.95090 5.97959 6.01343 6.23539 6.28995 6.48936 6.59269 6.66446 6.93569 6.99309 7.24201 7.40798 7.45741 7.78453 7.83020 7.88673 8.20363 8.23956 8.77988 9.02218 9.17841 9.54786 10.96058 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.024963 B = 0.008574 C = 0.007145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.383888 B = 3264.901085 C = 3917.770244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.136 4.136 3 C -0.105 4.105 4 C -0.140 4.140 5 C 0.088 3.912 6 N -0.605 5.605 7 H 0.405 0.595 8 C 0.021 3.979 9 C -0.102 4.102 10 C 0.271 3.729 11 H 0.045 0.955 12 N -0.851 5.851 13 C -0.533 4.533 14 H 0.055 0.945 15 C 0.063 3.937 16 N -0.896 5.896 17 Si 0.893 3.107 18 H -0.274 1.274 19 H -0.283 1.283 20 H -0.285 1.285 21 C -0.094 4.094 22 C -0.051 4.051 23 H 0.060 0.940 24 H 0.056 0.944 25 H 0.061 0.939 26 H 0.115 0.885 27 H 0.110 0.890 28 H 0.163 0.837 29 H 0.308 0.692 30 H 0.355 0.645 31 H 0.263 0.737 32 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.350 11.619 -1.161 11.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.137 4.137 3 C -0.124 4.124 4 C -0.161 4.161 5 C -0.020 4.020 6 N -0.209 5.209 7 H 0.240 0.760 8 C -0.101 4.101 9 C -0.108 4.108 10 C 0.160 3.840 11 H 0.063 0.937 12 N -0.380 5.380 13 C -0.573 4.573 14 H 0.073 0.927 15 C -0.138 4.138 16 N -0.536 5.536 17 Si 0.721 3.279 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.211 1.211 21 C -0.100 4.100 22 C -0.070 4.070 23 H 0.079 0.921 24 H 0.075 0.925 25 H 0.080 0.920 26 H 0.133 0.867 27 H 0.128 0.872 28 H 0.181 0.819 29 H 0.117 0.883 30 H 0.171 0.829 31 H 0.073 0.927 32 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.350 11.876 -1.884 12.030 hybrid contribution 0.143 -0.576 2.012 2.097 sum -0.207 11.300 0.128 11.303 Atomic orbital electron populations 1.20644 0.91863 1.01888 1.01544 1.19256 0.95530 0.92902 1.06041 1.20493 0.92838 0.96999 1.02061 1.19818 0.93714 0.94342 1.08256 1.18269 0.83967 0.95207 1.04555 1.41648 1.04982 1.07038 1.67213 0.75958 1.21432 0.99780 0.80948 1.07990 1.20980 0.89910 0.96218 1.03729 1.17352 0.90133 0.82734 0.93750 0.93740 1.59479 1.06574 1.17080 1.54846 1.21898 1.47360 0.93102 0.94943 0.92718 1.25018 0.94879 0.96787 0.97133 1.69754 1.50109 1.02853 1.30917 0.86519 0.78017 0.78571 0.84789 1.19820 1.20922 1.21078 1.19199 0.93191 0.92156 1.05476 1.20264 0.92285 0.97529 0.96878 0.92078 0.92462 0.91956 0.86736 0.87208 0.81944 0.88329 0.82850 0.92670 0.85907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.36 9.99 36.00 0.36 -1.00 16 2 C -0.14 -2.26 5.85 -104.99 -0.61 -2.88 16 3 C -0.10 -1.60 9.66 -39.54 -0.38 -1.98 16 4 C -0.14 -2.21 10.08 -39.43 -0.40 -2.61 16 5 C 0.09 1.62 7.28 -83.99 -0.61 1.01 16 6 N -0.61 -10.00 6.07 -10.65 -0.06 -10.07 16 7 H 0.41 5.04 8.96 -40.82 -0.37 4.68 16 8 C 0.02 0.41 11.06 -16.73 -0.19 0.22 16 9 C -0.10 -2.30 5.41 -102.71 -0.56 -2.85 16 10 C 0.27 6.88 3.23 -70.02 -0.23 6.66 16 11 H 0.04 1.26 8.14 -51.93 -0.42 0.84 16 12 N -0.85 -20.21 8.88 -6.65 -0.06 -20.27 16 13 C -0.53 -14.56 8.71 -34.45 -0.30 -14.86 16 14 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 15 C 0.06 1.72 5.38 -17.82 -0.10 1.63 16 16 N -0.90 -24.86 11.54 55.43 0.64 -24.22 16 17 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 18 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 C -0.09 -2.01 6.35 -105.14 -0.67 -2.68 16 22 C -0.05 -1.02 9.67 -39.64 -0.38 -1.40 16 23 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 25 H 0.06 0.81 8.07 -51.93 -0.42 0.39 16 26 H 0.11 1.40 8.06 -52.49 -0.42 0.97 16 27 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 28 H 0.16 2.77 7.31 -52.49 -0.38 2.39 16 29 H 0.31 6.84 8.00 -39.29 -0.31 6.53 16 30 H 0.36 9.07 7.08 -39.29 -0.28 8.79 16 31 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 32 H 0.12 2.50 8.06 -52.49 -0.42 2.07 16 LS Contribution 274.03 15.07 4.13 4.13 Total: -1.00 -29.47 274.03 -8.27 -37.74 By element: Atomic # 1 Polarization: 21.04 SS G_CDS: -3.84 Total: 17.20 kcal Atomic # 6 Polarization: -16.69 SS G_CDS: -4.06 Total: -20.74 kcal Atomic # 7 Polarization: -55.08 SS G_CDS: 0.52 Total: -54.56 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -29.47 -8.27 -37.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261257876.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.986 kcal (2) G-P(sol) polarization free energy of solvation -29.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds