Wall clock time and date at job start Mon Mar 30 2020 03:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38832 * 119.73833 * 2 1 4 4 C 1.37743 * 120.66710 * 180.02562 * 3 2 1 5 5 C 1.39123 * 119.78222 * 359.97438 * 4 3 2 6 6 N 1.37691 * 133.51229 * 179.97438 * 5 4 3 7 7 H 0.96992 * 125.06607 * 0.02562 * 6 5 4 8 8 C 1.36837 * 109.87433 * 180.02562 * 6 5 4 9 9 C 1.34238 * 109.92812 * 0.02562 * 8 6 5 10 10 C 1.50705 * 126.49952 * 180.02562 * 9 8 6 11 11 H 1.08999 * 109.46769 * 219.97032 * 10 9 8 12 12 N 1.46902 * 109.46984 * 339.96643 * 10 9 8 13 13 C 1.50692 * 109.47418 * 99.96996 * 10 9 8 14 14 H 1.08001 * 119.99911 * 0.02562 * 13 10 9 15 15 C 1.37870 * 120.00154 * 179.97438 * 13 10 9 16 16 N 1.31515 * 119.99971 * 0.02562 * 15 13 10 17 17 Si 1.86802 * 120.00385 * 179.97438 * 15 13 10 18 18 H 1.48506 * 109.46875 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47364 * 119.99778 * 17 15 13 20 20 H 1.48498 * 109.47503 * 240.00563 * 17 15 13 21 21 C 1.40666 * 119.33037 * 0.02562 * 5 4 3 22 22 C 1.36625 * 119.73321 * 180.02562 * 2 1 3 23 23 H 1.09005 * 109.47488 * 269.97594 * 1 2 3 24 24 H 1.08995 * 109.47398 * 29.97847 * 1 2 3 25 25 H 1.09000 * 109.47498 * 149.97819 * 1 2 3 26 26 H 1.08002 * 119.66365 * 0.04210 * 3 2 1 27 27 H 1.08001 * 120.11179 * 179.97438 * 4 3 2 28 28 H 1.08000 * 125.03320 * 180.02562 * 8 6 5 29 29 H 1.00899 * 110.99669 * 60.00365 * 12 10 9 30 30 H 1.00896 * 110.99646 * 183.95680 * 12 10 9 31 31 H 0.97005 * 119.99994 * 179.97438 * 16 15 13 32 32 H 1.07997 * 120.12341 * 359.70643 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1956 1.2055 0.0000 4 6 3.5729 1.2278 -0.0005 5 6 4.2834 0.0317 -0.0005 6 7 5.6261 -0.2734 -0.0014 7 1 6.3454 0.3773 -0.0019 8 6 5.7946 -1.6314 -0.0015 9 6 4.5985 -2.2408 -0.0013 10 6 4.3498 -3.7272 -0.0007 11 1 3.5131 -3.9557 -0.6608 12 7 5.5524 -4.4250 -0.4750 13 6 4.0243 -4.1816 1.3987 14 1 3.9996 -3.4656 2.2069 15 6 3.7571 -5.5111 1.6472 16 7 3.7868 -6.3829 0.6630 17 14 3.3544 -6.0746 3.3821 18 1 3.3861 -4.9085 4.3011 19 1 2.0003 -6.6839 3.4029 20 1 4.3560 -7.0790 3.8215 21 6 3.5809 -1.1870 -0.0005 22 6 2.1846 -1.1864 -0.0005 23 1 -0.3634 -0.0004 1.0277 24 1 -0.3634 0.8901 -0.5135 25 1 -0.3634 -0.8898 -0.5142 26 1 1.6459 2.1351 0.0007 27 1 4.0995 2.1707 -0.0009 28 1 6.7485 -2.1377 -0.0017 29 1 6.3427 -4.2290 0.1209 30 1 5.3899 -5.4183 -0.5451 31 1 3.5991 -7.3184 0.8378 32 1 1.6423 -2.1203 0.0038 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261257876.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:04 Heat of formation + Delta-G solvation = 24.957996 kcal Electronic energy + Delta-G solvation = -15467.239388 eV Core-core repulsion = 13005.490877 eV Total energy + Delta-G solvation = -2461.748511 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.98466 -38.20536 -36.61760 -33.61954 -32.41855 -31.83808 -29.23128 -27.92233 -27.06147 -24.26965 -23.39743 -21.77604 -19.85010 -18.74609 -18.49089 -17.02987 -16.58456 -15.97440 -15.47214 -15.27682 -14.88543 -14.75080 -14.56750 -14.19837 -14.07102 -13.29059 -13.05433 -12.88881 -12.78272 -12.73544 -12.22599 -12.00162 -11.87780 -11.85559 -11.39352 -10.74425 -10.29355 -9.19119 -8.85494 -8.39680 -7.99854 -6.33222 0.36087 0.80360 1.34182 1.36968 1.48434 2.02428 2.39577 2.44910 3.06999 3.08073 3.95359 4.12145 4.18871 4.41670 4.50079 4.56535 4.68081 4.78015 4.92840 5.02499 5.05137 5.15857 5.24280 5.34865 5.55749 5.67036 5.72450 5.89552 5.97884 6.12477 6.16606 6.41398 6.70214 6.94769 6.99802 7.16472 7.43336 8.85673 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.024963 B = 0.008574 C = 0.007145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.383888 B = 3264.901085 C = 3917.770244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.128 4.128 3 C -0.103 4.103 4 C -0.129 4.129 5 C 0.076 3.924 6 N -0.586 5.586 7 H 0.428 0.572 8 C 0.044 3.956 9 C -0.159 4.159 10 C 0.281 3.719 11 H -0.004 1.004 12 N -0.839 5.839 13 C -0.546 4.546 14 H 0.037 0.963 15 C 0.020 3.980 16 N -0.918 5.918 17 Si 0.956 3.044 18 H -0.276 1.276 19 H -0.280 1.280 20 H -0.274 1.274 21 C -0.132 4.132 22 C -0.093 4.093 23 H 0.070 0.930 24 H 0.087 0.913 25 H 0.055 0.945 26 H 0.158 0.842 27 H 0.151 0.849 28 H 0.183 0.817 29 H 0.319 0.681 30 H 0.344 0.656 31 H 0.267 0.733 32 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.081 14.313 -0.467 14.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.130 4.130 3 C -0.122 4.122 4 C -0.150 4.150 5 C -0.032 4.032 6 N -0.191 5.191 7 H 0.268 0.732 8 C -0.081 4.081 9 C -0.166 4.166 10 C 0.170 3.830 11 H 0.014 0.986 12 N -0.367 5.367 13 C -0.586 4.586 14 H 0.056 0.944 15 C -0.179 4.179 16 N -0.558 5.558 17 Si 0.782 3.218 18 H -0.201 1.201 19 H -0.206 1.206 20 H -0.199 1.199 21 C -0.138 4.138 22 C -0.112 4.112 23 H 0.089 0.911 24 H 0.106 0.894 25 H 0.074 0.926 26 H 0.176 0.824 27 H 0.169 0.831 28 H 0.200 0.800 29 H 0.128 0.872 30 H 0.159 0.841 31 H 0.076 0.924 32 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.060 14.613 -1.193 14.662 hybrid contribution 0.019 -1.333 1.755 2.204 sum -0.041 13.280 0.561 13.292 Atomic orbital electron populations 1.20719 0.89564 1.03118 1.02512 1.19682 0.97348 0.92357 1.03568 1.21005 0.93038 0.97804 1.00309 1.20329 0.94079 0.94791 1.05762 1.18542 0.84370 0.95163 1.05107 1.41514 1.05251 1.06440 1.65920 0.73234 1.21578 0.99258 0.82121 1.05153 1.20803 0.92300 0.95003 1.08468 1.16994 0.89050 0.85342 0.91629 0.98597 1.59421 1.06426 1.16028 1.54844 1.22028 1.47931 0.93147 0.95471 0.94420 1.25725 0.94672 0.96798 1.00741 1.69852 1.50329 1.03105 1.32506 0.85550 0.77991 0.77956 0.80346 1.20132 1.20555 1.19940 1.19477 0.93920 0.93296 1.07100 1.20276 0.92369 0.97979 1.00604 0.91112 0.89399 0.92599 0.82449 0.83106 0.80017 0.87200 0.84137 0.92395 0.88831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.54 9.99 71.23 0.71 -1.83 16 2 C -0.13 -4.14 5.85 -20.10 -0.12 -4.26 16 3 C -0.10 -2.75 9.66 22.29 0.22 -2.54 16 4 C -0.13 -3.59 10.08 22.37 0.23 -3.36 16 5 C 0.08 2.68 7.28 39.03 0.28 2.97 16 6 N -0.59 -18.18 6.07 -187.61 -1.14 -19.32 16 7 H 0.43 9.22 8.96 -92.71 -0.83 8.39 16 8 C 0.04 1.66 11.06 83.00 0.92 2.58 16 9 C -0.16 -7.44 5.41 -18.62 -0.10 -7.54 16 10 C 0.28 15.12 3.23 43.42 0.14 15.26 16 11 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 12 N -0.84 -41.35 8.88 -174.95 -1.55 -42.91 16 13 C -0.55 -31.19 8.71 25.60 0.22 -30.97 16 14 H 0.04 2.23 7.74 -2.91 -0.02 2.21 16 15 C 0.02 1.13 5.38 84.65 0.46 1.58 16 16 N -0.92 -52.45 11.54 21.44 0.25 -52.21 16 17 Si 0.96 44.50 29.54 68.60 2.03 46.52 16 18 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 19 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 20 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 21 C -0.13 -5.82 6.35 -20.20 -0.13 -5.95 16 22 C -0.09 -3.90 9.67 22.23 0.22 -3.69 16 23 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 24 H 0.09 1.64 8.08 -2.39 -0.02 1.62 16 25 H 0.05 1.44 8.07 -2.39 -0.02 1.42 16 26 H 0.16 2.90 8.06 -2.91 -0.02 2.88 16 27 H 0.15 2.96 8.06 -2.91 -0.02 2.94 16 28 H 0.18 5.98 7.31 -2.91 -0.02 5.96 16 29 H 0.32 14.39 8.00 -89.69 -0.72 13.67 16 30 H 0.34 18.26 7.08 -89.70 -0.63 17.62 16 31 H 0.27 14.40 8.31 -92.70 -0.77 13.63 16 32 H 0.09 4.25 8.06 -2.91 -0.02 4.23 16 Total: -1.00 -67.14 274.03 1.60 -65.54 By element: Atomic # 1 Polarization: 41.14 SS G_CDS: -1.02 Total: 40.11 kcal Atomic # 6 Polarization: -40.79 SS G_CDS: 3.04 Total: -37.75 kcal Atomic # 7 Polarization: -111.99 SS G_CDS: -2.45 Total: -114.43 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.52 kcal Total: -67.14 1.60 -65.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261257876.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.502 kcal (2) G-P(sol) polarization free energy of solvation -67.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds