Wall clock time and date at job start Mon Mar 30 2020 03:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 119.99683 * 2 1 4 4 H 1.48499 * 109.46912 * 265.31107 * 3 2 1 5 5 H 1.48496 * 109.47120 * 25.31214 * 3 2 1 6 6 H 1.48506 * 109.47015 * 145.31193 * 3 2 1 7 7 C 1.37873 * 120.00182 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00210 * 353.09267 * 7 2 1 9 9 C 1.50703 * 119.99901 * 173.08642 * 7 2 1 10 10 H 1.09002 * 109.47248 * 0.09690 * 9 7 2 11 11 C 1.53004 * 109.47142 * 240.09416 * 9 7 2 12 12 N 1.46894 * 109.47372 * 64.78655 * 11 9 7 13 13 C 1.50703 * 109.47029 * 120.09344 * 9 7 2 14 14 C 1.34231 * 126.50106 * 60.02218 * 13 9 7 15 15 N 1.36828 * 109.92992 * 179.97438 * 14 13 9 16 16 H 0.97001 * 125.06509 * 180.02562 * 15 14 13 17 17 C 1.37686 * 109.87696 * 0.02562 * 15 14 13 18 18 C 1.39126 * 133.50928 * 180.02562 * 17 15 14 19 19 C 1.37745 * 119.77391 * 179.25899 * 18 17 15 20 20 C 1.38838 * 120.66829 * 0.63744 * 19 18 17 21 21 C 1.36623 * 120.52760 * 359.57805 * 20 19 18 22 22 C 1.39627 * 119.76470 * 0.02562 * 21 20 19 23 23 H 0.97007 * 120.00273 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.47008 * 184.78766 * 11 9 7 25 25 H 1.08998 * 109.46750 * 304.78428 * 11 9 7 26 26 H 1.00896 * 110.99949 * 65.00856 * 12 11 9 27 27 H 1.00892 * 111.00023 * 188.96634 * 12 11 9 28 28 H 1.08007 * 125.03697 * 359.93331 * 14 13 9 29 29 H 1.07995 * 120.10790 * 359.97438 * 18 17 15 30 30 H 1.08000 * 119.66548 * 180.23626 * 19 18 17 31 31 H 1.07997 * 119.73669 * 179.60195 * 20 19 18 32 32 H 1.07997 * 120.12015 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.5956 1.9893 -1.3954 5 1 1.4004 2.6793 0.5986 6 1 3.4936 1.4709 0.7968 7 6 2.0045 -1.1940 0.0005 8 1 1.4705 -2.1259 0.1134 9 6 3.5033 -1.1987 -0.1566 10 1 3.8616 -0.1740 -0.2550 11 6 3.8825 -1.9940 -1.4075 12 7 3.3646 -1.3088 -2.5991 13 6 4.1333 -1.8369 1.0546 14 6 3.9318 -3.0895 1.4929 15 7 4.6741 -3.3143 2.6202 16 1 4.6937 -4.1468 3.1177 17 6 5.3891 -2.1828 2.9432 18 6 6.2795 -1.8719 3.9660 19 6 6.8587 -0.6230 4.0126 20 6 6.5532 0.3354 3.0556 21 6 5.6782 0.0528 2.0451 22 6 5.0857 -1.2095 1.9740 23 1 -0.4851 0.8401 -0.0004 24 1 4.9678 -2.0697 -1.4747 25 1 3.4517 -2.9934 -1.3470 26 1 3.8102 -0.4120 -2.7227 27 1 3.4727 -1.8827 -3.4218 28 1 3.2798 -3.8127 1.0255 29 1 6.5245 -2.6110 4.7143 30 1 7.5526 -0.3848 4.8052 31 1 7.0112 1.3119 3.1102 32 1 5.4456 0.8032 1.3040 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261258807.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:13 Heat of formation + Delta-G solvation = 55.721414 kcal Electronic energy + Delta-G solvation = -15672.385234 eV Core-core repulsion = 13211.970725 eV Total energy + Delta-G solvation = -2460.414509 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.65373 -36.50518 -35.22393 -32.11510 -31.55931 -29.52359 -28.77250 -26.84111 -23.95125 -22.33335 -21.42725 -20.92621 -18.30709 -17.30611 -16.90277 -15.64878 -15.04150 -14.84350 -14.17360 -13.80623 -13.51710 -13.44029 -13.38136 -12.83033 -12.31864 -11.93742 -11.55140 -11.21107 -11.19767 -10.81042 -10.77403 -10.39988 -10.00006 -9.57122 -9.06975 -8.84434 -8.35909 -7.69052 -7.67342 -6.90968 -5.89313 -3.83403 1.62722 2.09429 3.41336 3.46342 3.49348 3.50848 3.69444 4.41331 4.59556 5.18418 5.30982 5.42427 5.44495 5.57105 5.65479 5.89007 5.97500 6.15050 6.23504 6.31299 6.37322 6.53648 6.70815 6.86021 6.92681 7.05803 7.19606 7.35952 7.56555 7.72480 7.87612 8.10932 8.15108 8.27810 8.66727 9.12321 9.75662 11.24877 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.024820 B = 0.010038 C = 0.008835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.845240 B = 2788.651268 C = 3168.562692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.078 3.922 3 Si 0.872 3.128 4 H -0.276 1.276 5 H -0.296 1.296 6 H -0.264 1.264 7 C -0.472 4.472 8 H 0.069 0.931 9 C 0.076 3.924 10 H 0.040 0.960 11 C 0.083 3.917 12 N -0.829 5.829 13 C -0.111 4.111 14 C 0.028 3.972 15 N -0.602 5.602 16 H 0.407 0.593 17 C 0.093 3.907 18 C -0.139 4.139 19 C -0.108 4.108 20 C -0.164 4.164 21 C -0.063 4.063 22 C -0.105 4.105 23 H 0.260 0.740 24 H -0.005 1.005 25 H 0.059 0.941 26 H 0.328 0.672 27 H 0.324 0.676 28 H 0.164 0.836 29 H 0.111 0.889 30 H 0.116 0.884 31 H 0.114 0.886 32 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.865 -3.751 3.869 13.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.123 4.123 3 Si 0.701 3.299 4 H -0.202 1.202 5 H -0.223 1.223 6 H -0.189 1.189 7 C -0.510 4.510 8 H 0.087 0.913 9 C 0.056 3.944 10 H 0.059 0.941 11 C -0.048 4.048 12 N -0.356 5.356 13 C -0.118 4.118 14 C -0.095 4.095 15 N -0.205 5.205 16 H 0.242 0.758 17 C -0.015 4.015 18 C -0.160 4.160 19 C -0.127 4.127 20 C -0.183 4.183 21 C -0.081 4.081 22 C -0.110 4.110 23 H 0.070 0.930 24 H 0.013 0.987 25 H 0.077 0.923 26 H 0.139 0.861 27 H 0.135 0.865 28 H 0.182 0.818 29 H 0.129 0.871 30 H 0.134 0.866 31 H 0.132 0.868 32 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 11.939 -3.787 4.266 13.232 hybrid contribution 1.221 0.483 0.013 1.313 sum 13.160 -3.304 4.278 14.227 Atomic orbital electron populations 1.69897 1.06290 1.26518 1.51707 1.24930 0.94502 0.98557 0.94301 0.86948 0.80308 0.84178 0.78438 1.20234 1.22264 1.18935 1.20621 0.87914 0.94360 1.48079 0.91269 1.17745 0.96301 0.94175 0.86202 0.94139 1.21882 0.92932 0.98049 0.91926 1.58388 1.65923 1.06521 1.04808 1.21108 0.97698 0.92851 1.00153 1.21467 0.99469 0.98968 0.89551 1.41684 1.40471 1.12403 1.25977 0.75755 1.18255 0.97602 0.87907 0.97775 1.19879 1.00029 0.97838 0.98291 1.20630 1.00155 0.92952 0.99000 1.20489 1.01621 0.99391 0.96836 1.20409 0.94949 0.94976 0.97799 1.19340 1.00469 0.93995 0.97193 0.93045 0.98681 0.92274 0.86104 0.86532 0.81847 0.87071 0.86592 0.86815 0.86464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.21 13.96 55.43 0.77 -27.43 16 2 C 0.08 2.27 5.47 -17.82 -0.10 2.17 16 3 Si 0.87 22.10 26.98 -169.99 -4.59 17.51 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.30 -7.61 7.11 56.52 0.40 -7.21 16 6 H -0.26 -6.39 5.72 56.52 0.32 -6.07 16 7 C -0.47 -13.07 8.41 -34.44 -0.29 -13.36 16 8 H 0.07 2.08 8.06 -52.49 -0.42 1.66 16 9 C 0.08 1.76 2.34 -92.92 -0.22 1.54 16 10 H 0.04 0.97 4.75 -51.93 -0.25 0.73 16 11 C 0.08 1.68 5.99 -3.83 -0.02 1.66 16 12 N -0.83 -16.19 9.29 -10.37 -0.10 -16.29 16 13 C -0.11 -2.39 5.04 -102.71 -0.52 -2.91 16 14 C 0.03 0.53 11.34 -16.73 -0.19 0.34 16 15 N -0.60 -9.67 6.07 -10.65 -0.06 -9.73 16 16 H 0.41 4.89 8.96 -40.82 -0.37 4.53 16 17 C 0.09 1.66 7.28 -83.99 -0.61 1.04 16 18 C -0.14 -2.12 10.08 -39.43 -0.40 -2.52 16 19 C -0.11 -1.58 10.01 -39.54 -0.40 -1.98 16 20 C -0.16 -2.63 9.97 -39.94 -0.40 -3.03 16 21 C -0.06 -1.21 10.05 -39.65 -0.40 -1.61 16 22 C -0.10 -2.15 6.35 -105.14 -0.67 -2.81 16 23 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 24 H 0.00 -0.09 8.14 -51.93 -0.42 -0.51 16 25 H 0.06 1.18 8.13 -51.93 -0.42 0.75 16 26 H 0.33 6.07 9.07 -39.29 -0.36 5.71 16 27 H 0.32 5.23 9.08 -39.30 -0.36 4.87 16 28 H 0.16 2.77 8.06 -52.48 -0.42 2.34 16 29 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 30 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 31 H 0.11 1.53 8.06 -52.49 -0.42 1.10 16 32 H 0.12 2.27 7.02 -52.49 -0.37 1.90 16 LS Contribution 272.32 15.07 4.10 4.10 Total: -1.00 -32.76 272.32 -7.94 -40.70 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: -3.87 Total: 12.60 kcal Atomic # 6 Polarization: -17.26 SS G_CDS: -4.20 Total: -21.46 kcal Atomic # 7 Polarization: -54.07 SS G_CDS: 0.61 Total: -53.45 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.59 Total: 17.51 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -32.76 -7.94 -40.70 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261258807.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.421 kcal (2) G-P(sol) polarization free energy of solvation -32.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds