Wall clock time and date at job start Mon Mar 30 2020 03:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 119.99683 * 2 1 4 4 H 1.48499 * 109.46912 * 265.31107 * 3 2 1 5 5 H 1.48496 * 109.47120 * 25.31214 * 3 2 1 6 6 H 1.48506 * 109.47015 * 145.31193 * 3 2 1 7 7 C 1.37873 * 120.00182 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00210 * 353.09267 * 7 2 1 9 9 C 1.50703 * 119.99901 * 173.08642 * 7 2 1 10 10 H 1.09002 * 109.47248 * 0.09690 * 9 7 2 11 11 C 1.53004 * 109.47142 * 240.09416 * 9 7 2 12 12 N 1.46894 * 109.47372 * 64.78655 * 11 9 7 13 13 C 1.50703 * 109.47029 * 120.09344 * 9 7 2 14 14 C 1.34231 * 126.50106 * 60.02218 * 13 9 7 15 15 N 1.36828 * 109.92992 * 179.97438 * 14 13 9 16 16 H 0.97001 * 125.06509 * 180.02562 * 15 14 13 17 17 C 1.37686 * 109.87696 * 0.02562 * 15 14 13 18 18 C 1.39126 * 133.50928 * 180.02562 * 17 15 14 19 19 C 1.37745 * 119.77391 * 179.25899 * 18 17 15 20 20 C 1.38838 * 120.66829 * 0.63744 * 19 18 17 21 21 C 1.36623 * 120.52760 * 359.57805 * 20 19 18 22 22 C 1.39627 * 119.76470 * 0.02562 * 21 20 19 23 23 H 0.97007 * 120.00273 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.47008 * 184.78766 * 11 9 7 25 25 H 1.08998 * 109.46750 * 304.78428 * 11 9 7 26 26 H 1.00896 * 110.99949 * 65.00856 * 12 11 9 27 27 H 1.00892 * 111.00023 * 188.96634 * 12 11 9 28 28 H 1.08007 * 125.03697 * 359.93331 * 14 13 9 29 29 H 1.07995 * 120.10790 * 359.97438 * 18 17 15 30 30 H 1.08000 * 119.66548 * 180.23626 * 19 18 17 31 31 H 1.07997 * 119.73669 * 179.60195 * 20 19 18 32 32 H 1.07997 * 120.12015 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.5956 1.9893 -1.3954 5 1 1.4004 2.6793 0.5986 6 1 3.4936 1.4709 0.7968 7 6 2.0045 -1.1940 0.0005 8 1 1.4705 -2.1259 0.1134 9 6 3.5033 -1.1987 -0.1566 10 1 3.8616 -0.1740 -0.2550 11 6 3.8825 -1.9940 -1.4075 12 7 3.3646 -1.3088 -2.5991 13 6 4.1333 -1.8369 1.0546 14 6 3.9318 -3.0895 1.4929 15 7 4.6741 -3.3143 2.6202 16 1 4.6937 -4.1468 3.1177 17 6 5.3891 -2.1828 2.9432 18 6 6.2795 -1.8719 3.9660 19 6 6.8587 -0.6230 4.0126 20 6 6.5532 0.3354 3.0556 21 6 5.6782 0.0528 2.0451 22 6 5.0857 -1.2095 1.9740 23 1 -0.4851 0.8401 -0.0004 24 1 4.9678 -2.0697 -1.4747 25 1 3.4517 -2.9934 -1.3470 26 1 3.8102 -0.4120 -2.7227 27 1 3.4727 -1.8827 -3.4218 28 1 3.2798 -3.8127 1.0255 29 1 6.5245 -2.6110 4.7143 30 1 7.5526 -0.3848 4.8052 31 1 7.0112 1.3119 3.1102 32 1 5.4456 0.8032 1.3040 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261258807.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:12 Heat of formation + Delta-G solvation = 32.267998 kcal Electronic energy + Delta-G solvation = -15673.402251 eV Core-core repulsion = 13211.970725 eV Total energy + Delta-G solvation = -2461.431526 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.00783 -37.83401 -36.88469 -34.14258 -33.07822 -31.02221 -30.09454 -28.46334 -25.87279 -23.62681 -22.93267 -22.37416 -19.90161 -18.99765 -18.63064 -17.00513 -16.58626 -16.32033 -15.90233 -15.26645 -15.09140 -14.90557 -14.72742 -14.68177 -14.10594 -13.31879 -13.27545 -12.69771 -12.61826 -12.48200 -12.40347 -12.10672 -11.70736 -11.52966 -10.93844 -10.55894 -10.31413 -9.22315 -9.00401 -8.33115 -8.12564 -6.08168 0.32788 0.81374 1.38158 1.41212 1.49498 2.00482 2.42322 2.47548 3.08586 3.29265 3.92602 3.95509 4.12958 4.28106 4.42851 4.52038 4.61532 4.65789 4.72535 4.90486 5.00766 5.13880 5.21377 5.32761 5.48836 5.66443 5.75627 5.82138 5.98253 6.07840 6.34434 6.48530 6.55736 6.86875 6.91315 6.94386 7.53812 9.05099 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.024820 B = 0.010038 C = 0.008835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.845240 B = 2788.651268 C = 3168.562692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C 0.017 3.983 3 Si 0.930 3.070 4 H -0.263 1.263 5 H -0.303 1.303 6 H -0.251 1.251 7 C -0.458 4.458 8 H 0.032 0.968 9 C 0.080 3.920 10 H 0.030 0.970 11 C 0.092 3.908 12 N -0.848 5.848 13 C -0.158 4.158 14 C 0.040 3.960 15 N -0.586 5.586 16 H 0.427 0.573 17 C 0.080 3.920 18 C -0.133 4.133 19 C -0.103 4.103 20 C -0.156 4.156 21 C -0.099 4.099 22 C -0.140 4.140 23 H 0.257 0.743 24 H 0.016 0.984 25 H 0.057 0.943 26 H 0.334 0.666 27 H 0.343 0.657 28 H 0.174 0.826 29 H 0.148 0.852 30 H 0.158 0.842 31 H 0.140 0.860 32 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.771 -4.017 5.395 17.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.178 4.178 3 Si 0.756 3.244 4 H -0.188 1.188 5 H -0.230 1.230 6 H -0.176 1.176 7 C -0.496 4.496 8 H 0.050 0.950 9 C 0.060 3.940 10 H 0.048 0.952 11 C -0.039 4.039 12 N -0.378 5.378 13 C -0.166 4.166 14 C -0.085 4.085 15 N -0.191 5.191 16 H 0.267 0.733 17 C -0.028 4.028 18 C -0.154 4.154 19 C -0.122 4.122 20 C -0.176 4.176 21 C -0.117 4.117 22 C -0.145 4.145 23 H 0.066 0.934 24 H 0.034 0.966 25 H 0.076 0.924 26 H 0.145 0.855 27 H 0.156 0.844 28 H 0.191 0.809 29 H 0.166 0.834 30 H 0.176 0.824 31 H 0.158 0.842 32 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 14.893 -4.088 5.799 16.497 hybrid contribution 0.401 0.454 -0.393 0.722 sum 15.294 -3.634 5.406 16.623 Atomic orbital electron populations 1.70054 1.08057 1.27073 1.54884 1.25680 0.95104 1.02127 0.94925 0.86015 0.79279 0.79866 0.79193 1.18843 1.23040 1.17554 1.20863 0.90477 0.92544 1.45687 0.94976 1.17611 0.93183 0.94542 0.88702 0.95175 1.21685 0.94089 0.97356 0.90810 1.58342 1.66412 1.07383 1.05628 1.20950 1.00372 0.94544 1.00711 1.21577 0.98720 0.98290 0.89873 1.41572 1.39358 1.13045 1.25114 0.73332 1.18575 0.98414 0.87675 0.98122 1.20366 0.98339 0.98932 0.97751 1.21144 0.99871 0.92088 0.99124 1.20872 1.00000 1.00974 0.95715 1.20504 0.97204 0.94687 0.99344 1.19563 1.01369 0.95398 0.98137 0.93397 0.96628 0.92409 0.85451 0.84380 0.80856 0.83419 0.82444 0.84222 0.88011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.06 13.96 21.45 0.30 -61.76 16 2 C 0.02 1.00 5.47 84.65 0.46 1.46 16 3 Si 0.93 46.75 26.98 68.60 1.85 48.60 16 4 H -0.26 -12.53 7.11 99.48 0.71 -11.82 16 5 H -0.30 -15.43 7.11 99.48 0.71 -14.72 16 6 H -0.25 -11.98 5.72 99.48 0.57 -11.41 16 7 C -0.46 -26.10 8.41 25.60 0.22 -25.89 16 8 H 0.03 2.02 8.06 -2.91 -0.02 1.99 16 9 C 0.08 3.74 2.34 -12.28 -0.03 3.71 16 10 H 0.03 1.46 4.75 -2.39 -0.01 1.45 16 11 C 0.09 3.67 5.99 86.31 0.52 4.18 16 12 N -0.85 -32.66 9.29 -186.73 -1.74 -34.39 16 13 C -0.16 -6.81 5.04 -18.63 -0.09 -6.90 16 14 C 0.04 1.48 11.34 83.00 0.94 2.42 16 15 N -0.59 -17.57 6.07 -187.60 -1.14 -18.70 16 16 H 0.43 9.04 8.96 -92.71 -0.83 8.21 16 17 C 0.08 2.67 7.28 39.03 0.28 2.96 16 18 C -0.13 -3.48 10.08 22.37 0.23 -3.26 16 19 C -0.10 -2.53 10.01 22.30 0.22 -2.31 16 20 C -0.16 -4.55 9.97 22.04 0.22 -4.33 16 21 C -0.10 -3.69 10.05 22.23 0.22 -3.47 16 22 C -0.14 -5.61 6.35 -20.20 -0.13 -5.74 16 23 H 0.26 15.86 8.31 -92.70 -0.77 15.09 16 24 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 25 H 0.06 2.29 8.13 -2.39 -0.02 2.27 16 26 H 0.33 12.10 9.07 -89.70 -0.81 11.29 16 27 H 0.34 10.74 9.08 -89.70 -0.81 9.92 16 28 H 0.17 5.81 8.06 -2.91 -0.02 5.79 16 29 H 0.15 2.76 8.06 -2.91 -0.02 2.73 16 30 H 0.16 2.58 8.06 -2.91 -0.02 2.55 16 31 H 0.14 3.23 8.06 -2.91 -0.02 3.21 16 32 H 0.10 3.96 7.02 -2.91 -0.02 3.94 16 Total: -1.00 -73.29 272.32 0.90 -72.39 By element: Atomic # 1 Polarization: 32.47 SS G_CDS: -1.43 Total: 31.03 kcal Atomic # 6 Polarization: -40.22 SS G_CDS: 3.06 Total: -37.16 kcal Atomic # 7 Polarization: -112.28 SS G_CDS: -2.57 Total: -114.86 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 1.85 Total: 48.60 kcal Total: -73.29 0.90 -72.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261258807.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.656 kcal (2) G-P(sol) polarization free energy of solvation -73.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds