Wall clock time and date at job start Mon Mar 30 2020 03:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 120.00051 * 2 1 4 4 H 1.48500 * 109.47428 * 359.97438 * 3 2 1 5 5 H 1.48495 * 109.47303 * 119.99988 * 3 2 1 6 6 H 1.48509 * 109.46523 * 239.99529 * 3 2 1 7 7 C 1.37881 * 119.99651 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99857 * 176.06772 * 7 2 1 9 9 C 1.50692 * 119.99983 * 356.07371 * 7 2 1 10 10 H 1.09002 * 109.47364 * 325.24229 * 9 7 2 11 11 C 1.53007 * 109.47337 * 85.24326 * 9 7 2 12 12 N 1.46893 * 109.47421 * 185.39128 * 11 9 7 13 13 C 1.50700 * 109.47164 * 205.24015 * 9 7 2 14 14 C 1.34240 * 126.50108 * 299.69203 * 13 9 7 15 15 N 1.36837 * 109.92620 * 179.86637 * 14 13 9 16 16 H 0.97004 * 125.06117 * 180.14843 * 15 14 13 17 17 C 1.37682 * 109.87432 * 0.40642 * 15 14 13 18 18 C 1.39129 * 133.51197 * 179.76061 * 17 15 14 19 19 C 1.37745 * 119.77939 * 180.02562 * 18 17 15 20 20 C 1.38827 * 120.67331 * 359.97438 * 19 18 17 21 21 C 1.36626 * 120.52267 * 359.97438 * 20 19 18 22 22 C 1.39635 * 119.76543 * 0.03409 * 21 20 19 23 23 H 0.96996 * 119.99789 * 174.44062 * 1 2 3 24 24 H 1.09006 * 109.46829 * 305.39331 * 11 9 7 25 25 H 1.08999 * 109.46972 * 65.39082 * 11 9 7 26 26 H 1.00898 * 111.00500 * 180.02562 * 12 11 9 27 27 H 1.00897 * 111.00178 * 303.95619 * 12 11 9 28 28 H 1.07995 * 125.03606 * 359.97438 * 14 13 9 29 29 H 1.08003 * 120.10972 * 359.97438 * 18 17 15 30 30 H 1.08006 * 119.66353 * 179.97438 * 19 18 17 31 31 H 1.07994 * 119.74133 * 180.02562 * 20 19 18 32 32 H 1.07998 * 120.11806 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2843 2.7465 -0.0006 5 1 3.1029 1.6964 1.2124 6 1 3.1030 1.6962 -1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0826 -1.1953 -0.0636 9 6 1.2536 -2.4975 0.0905 10 1 0.3770 -2.3688 0.7254 11 6 0.8108 -2.9287 -1.3092 12 7 -0.0301 -4.1289 -1.2087 13 6 2.1509 -3.5545 0.6812 14 6 3.3168 -3.9862 0.1749 15 7 3.8493 -4.9503 0.9869 16 1 4.6887 -5.4103 0.8293 17 6 3.0135 -5.1743 2.0578 18 6 3.0690 -6.0298 3.1536 19 6 2.0500 -6.0212 4.0805 20 6 0.9661 -5.1662 3.9335 21 6 0.8919 -4.3172 2.8656 22 6 1.9136 -4.3094 1.9139 23 1 -0.4850 -0.8361 -0.0814 24 1 0.2412 -2.1239 -1.7740 25 1 1.6888 -3.1500 -1.9160 26 1 -0.3353 -4.4341 -2.1207 27 1 0.4533 -4.8695 -0.7231 28 1 3.7685 -3.6248 -0.7371 29 1 3.9078 -6.6989 3.2767 30 1 2.0948 -6.6863 4.9303 31 1 0.1758 -5.1717 4.6694 32 1 0.0459 -3.6546 2.7579 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261258810.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:14 Heat of formation + Delta-G solvation = 44.781648 kcal Electronic energy + Delta-G solvation = -15650.036766 eV Core-core repulsion = 13189.147873 eV Total energy + Delta-G solvation = -2460.888893 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.68333 -36.54114 -35.37178 -32.31029 -31.39496 -29.20782 -28.73683 -26.53181 -23.66281 -22.32842 -21.62631 -21.09701 -18.53247 -17.40736 -16.50868 -15.83826 -14.98648 -14.79608 -13.90602 -13.84138 -13.69441 -13.50023 -13.26292 -12.86877 -12.28215 -11.82700 -11.39358 -11.25611 -11.15602 -10.79718 -10.68165 -10.15577 -10.10322 -9.66711 -9.12619 -8.50722 -8.38157 -7.82870 -7.69791 -6.94084 -6.28345 -4.03259 1.63350 2.10383 3.40127 3.47362 3.48488 3.65494 3.66405 4.42456 4.57379 5.18920 5.35617 5.39629 5.46262 5.60977 5.63261 5.91965 5.93032 6.19453 6.33500 6.39099 6.52194 6.63911 6.69419 6.90562 7.09663 7.21353 7.32202 7.42253 7.68044 7.76727 7.93200 8.10553 8.19837 8.33235 8.49395 8.92723 9.68404 11.08157 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.026860 B = 0.008244 C = 0.007919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.209353 B = 3395.513879 C = 3534.759506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.022 3.978 3 Si 1.064 2.936 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.289 1.289 7 C -0.587 4.587 8 H 0.048 0.952 9 C 0.096 3.904 10 H 0.047 0.953 11 C 0.073 3.927 12 N -0.852 5.852 13 C -0.098 4.098 14 C 0.013 3.987 15 N -0.603 5.603 16 H 0.406 0.594 17 C 0.092 3.908 18 C -0.143 4.143 19 C -0.106 4.106 20 C -0.164 4.164 21 C -0.053 4.053 22 C -0.103 4.103 23 H 0.276 0.724 24 H 0.066 0.934 25 H 0.006 0.994 26 H 0.320 0.680 27 H 0.330 0.670 28 H 0.160 0.840 29 H 0.110 0.890 30 H 0.116 0.884 31 H 0.115 0.885 32 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.463 -10.819 2.543 12.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.183 4.183 3 Si 0.892 3.108 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.216 1.216 7 C -0.626 4.626 8 H 0.066 0.934 9 C 0.076 3.924 10 H 0.065 0.935 11 C -0.057 4.057 12 N -0.380 5.380 13 C -0.104 4.104 14 C -0.110 4.110 15 N -0.207 5.207 16 H 0.241 0.759 17 C -0.016 4.016 18 C -0.164 4.164 19 C -0.125 4.125 20 C -0.184 4.184 21 C -0.071 4.071 22 C -0.108 4.108 23 H 0.087 0.913 24 H 0.084 0.916 25 H 0.024 0.976 26 H 0.130 0.870 27 H 0.142 0.858 28 H 0.177 0.823 29 H 0.128 0.872 30 H 0.134 0.866 31 H 0.133 0.867 32 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 4.876 -8.703 2.963 10.407 hybrid contribution 1.568 -2.323 -0.761 2.904 sum 6.445 -11.026 2.201 12.960 Atomic orbital electron populations 1.70740 1.06786 1.31474 1.45424 1.25772 0.96538 1.02354 0.93647 0.83624 0.74982 0.75727 0.76426 1.20786 1.21537 1.21587 1.21884 0.94125 0.91000 1.55611 0.93366 1.17461 0.93724 0.90289 0.90895 0.93523 1.22195 0.92998 0.90691 0.99836 1.58929 1.46709 1.09320 1.23063 1.20971 0.96703 0.98655 0.94061 1.21481 0.96668 0.94784 0.98033 1.41648 1.21135 1.36708 1.21197 0.75892 1.18280 0.92603 0.99619 0.91102 1.19861 1.00661 1.01255 0.94620 1.20643 0.94108 0.99469 0.98293 1.20509 0.99337 0.99185 0.99325 1.20379 0.97244 0.97050 0.92436 1.19333 0.95258 0.98785 0.97447 0.91296 0.91589 0.97613 0.86969 0.85827 0.82278 0.87200 0.86617 0.86706 0.86141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.09 13.57 55.43 0.75 -26.33 16 2 C 0.02 0.62 5.45 -17.82 -0.10 0.52 16 3 Si 1.06 25.04 29.91 -169.99 -5.08 19.95 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.29 -6.47 7.11 56.52 0.40 -6.06 16 7 C -0.59 -16.08 8.21 -34.44 -0.28 -16.36 16 8 H 0.05 1.32 7.64 -52.49 -0.40 0.91 16 9 C 0.10 2.37 1.99 -92.92 -0.18 2.19 16 10 H 0.05 1.30 7.03 -51.93 -0.37 0.93 16 11 C 0.07 1.64 6.02 -3.82 -0.02 1.62 16 12 N -0.85 -16.59 9.62 -10.37 -0.10 -16.69 16 13 C -0.10 -2.13 4.08 -102.71 -0.42 -2.54 16 14 C 0.01 0.24 11.02 -16.73 -0.18 0.06 16 15 N -0.60 -9.67 6.07 -10.65 -0.06 -9.73 16 16 H 0.41 4.90 8.96 -40.82 -0.37 4.54 16 17 C 0.09 1.63 7.28 -83.99 -0.61 1.02 16 18 C -0.14 -2.17 10.08 -39.43 -0.40 -2.57 16 19 C -0.11 -1.55 10.01 -39.54 -0.40 -1.94 16 20 C -0.16 -2.63 9.97 -39.95 -0.40 -3.03 16 21 C -0.05 -1.01 10.05 -39.64 -0.40 -1.41 16 22 C -0.10 -2.11 6.35 -105.14 -0.67 -2.78 16 23 H 0.28 8.24 6.31 -40.82 -0.26 7.98 16 24 H 0.07 1.64 7.69 -51.93 -0.40 1.24 16 25 H 0.01 0.12 7.86 -51.93 -0.41 -0.29 16 26 H 0.32 5.35 9.08 -39.29 -0.36 5.00 16 27 H 0.33 6.25 8.09 -39.29 -0.32 5.93 16 28 H 0.16 2.77 8.06 -52.49 -0.42 2.35 16 29 H 0.11 1.35 8.06 -52.48 -0.42 0.93 16 30 H 0.12 1.32 8.06 -52.48 -0.42 0.90 16 31 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 32 H 0.12 2.37 8.06 -52.49 -0.42 1.95 16 LS Contribution 273.96 15.07 4.13 4.13 Total: -1.00 -30.76 273.96 -8.21 -38.97 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: -3.78 Total: 14.94 kcal Atomic # 6 Polarization: -21.17 SS G_CDS: -4.06 Total: -25.23 kcal Atomic # 7 Polarization: -53.35 SS G_CDS: 0.59 Total: -52.76 kcal Atomic # 14 Polarization: 25.04 SS G_CDS: -5.08 Total: 19.95 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -30.76 -8.21 -38.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261258810.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.750 kcal (2) G-P(sol) polarization free energy of solvation -30.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds