Wall clock time and date at job start Mon Mar 30 2020 03:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 120.00051 * 2 1 4 4 H 1.48500 * 109.47428 * 359.97438 * 3 2 1 5 5 H 1.48495 * 109.47303 * 119.99988 * 3 2 1 6 6 H 1.48509 * 109.46523 * 239.99529 * 3 2 1 7 7 C 1.37881 * 119.99651 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99857 * 176.06772 * 7 2 1 9 9 C 1.50692 * 119.99983 * 356.07371 * 7 2 1 10 10 H 1.09002 * 109.47364 * 325.24229 * 9 7 2 11 11 C 1.53007 * 109.47337 * 85.24326 * 9 7 2 12 12 N 1.46893 * 109.47421 * 185.39128 * 11 9 7 13 13 C 1.50700 * 109.47164 * 205.24015 * 9 7 2 14 14 C 1.34240 * 126.50108 * 299.69203 * 13 9 7 15 15 N 1.36837 * 109.92620 * 179.86637 * 14 13 9 16 16 H 0.97004 * 125.06117 * 180.14843 * 15 14 13 17 17 C 1.37682 * 109.87432 * 0.40642 * 15 14 13 18 18 C 1.39129 * 133.51197 * 179.76061 * 17 15 14 19 19 C 1.37745 * 119.77939 * 180.02562 * 18 17 15 20 20 C 1.38827 * 120.67331 * 359.97438 * 19 18 17 21 21 C 1.36626 * 120.52267 * 359.97438 * 20 19 18 22 22 C 1.39635 * 119.76543 * 0.03409 * 21 20 19 23 23 H 0.96996 * 119.99789 * 174.44062 * 1 2 3 24 24 H 1.09006 * 109.46829 * 305.39331 * 11 9 7 25 25 H 1.08999 * 109.46972 * 65.39082 * 11 9 7 26 26 H 1.00898 * 111.00500 * 180.02562 * 12 11 9 27 27 H 1.00897 * 111.00178 * 303.95619 * 12 11 9 28 28 H 1.07995 * 125.03606 * 359.97438 * 14 13 9 29 29 H 1.08003 * 120.10972 * 359.97438 * 18 17 15 30 30 H 1.08006 * 119.66353 * 179.97438 * 19 18 17 31 31 H 1.07994 * 119.74133 * 180.02562 * 20 19 18 32 32 H 1.07998 * 120.11806 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2843 2.7465 -0.0006 5 1 3.1029 1.6964 1.2124 6 1 3.1030 1.6962 -1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0826 -1.1953 -0.0636 9 6 1.2536 -2.4975 0.0905 10 1 0.3770 -2.3688 0.7254 11 6 0.8108 -2.9287 -1.3092 12 7 -0.0301 -4.1289 -1.2087 13 6 2.1509 -3.5545 0.6812 14 6 3.3168 -3.9862 0.1749 15 7 3.8493 -4.9503 0.9869 16 1 4.6887 -5.4103 0.8293 17 6 3.0135 -5.1743 2.0578 18 6 3.0690 -6.0298 3.1536 19 6 2.0500 -6.0212 4.0805 20 6 0.9661 -5.1662 3.9335 21 6 0.8919 -4.3172 2.8656 22 6 1.9136 -4.3094 1.9139 23 1 -0.4850 -0.8361 -0.0814 24 1 0.2412 -2.1239 -1.7740 25 1 1.6888 -3.1500 -1.9160 26 1 -0.3353 -4.4341 -2.1207 27 1 0.4533 -4.8695 -0.7231 28 1 3.7685 -3.6248 -0.7371 29 1 3.9078 -6.6989 3.2767 30 1 2.0948 -6.6863 4.9303 31 1 0.1758 -5.1717 4.6694 32 1 0.0459 -3.6546 2.7579 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261258810.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:14 Heat of formation + Delta-G solvation = 23.864248 kcal Electronic energy + Delta-G solvation = -15650.943813 eV Core-core repulsion = 13189.147873 eV Total energy + Delta-G solvation = -2461.795940 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.06907 -37.95293 -37.09850 -34.29851 -32.85706 -30.73736 -30.11133 -28.20524 -25.73085 -23.65269 -23.32022 -22.47003 -20.22180 -18.90625 -18.32999 -17.22939 -16.51735 -16.27304 -15.68306 -15.58593 -15.23876 -14.85181 -14.63811 -14.59368 -13.94905 -13.43223 -13.31276 -12.74389 -12.55154 -12.47138 -12.19701 -11.97994 -11.85273 -11.42186 -10.82016 -10.50990 -10.24786 -9.50131 -9.03764 -8.60532 -8.29475 -6.25837 0.30200 0.79311 1.53314 1.61261 1.80393 1.94168 2.36775 2.61427 3.07570 3.26381 3.90372 3.93956 4.07452 4.26031 4.37971 4.47626 4.57606 4.64923 4.74766 4.82792 5.05172 5.09579 5.18726 5.39138 5.58972 5.67997 5.77574 5.91663 6.07374 6.08656 6.30175 6.33503 6.41112 6.65616 6.77563 6.88167 7.54234 8.84458 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.026860 B = 0.008244 C = 0.007919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.209353 B = 3395.513879 C = 3534.759506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.032 4.032 3 Si 1.110 2.890 4 H -0.286 1.286 5 H -0.278 1.278 6 H -0.267 1.267 7 C -0.593 4.593 8 H 0.047 0.953 9 C 0.102 3.898 10 H 0.000 1.000 11 C 0.090 3.910 12 N -0.851 5.851 13 C -0.145 4.145 14 C 0.032 3.968 15 N -0.584 5.584 16 H 0.428 0.572 17 C 0.084 3.916 18 C -0.133 4.133 19 C -0.101 4.101 20 C -0.155 4.155 21 C -0.092 4.092 22 C -0.138 4.138 23 H 0.260 0.740 24 H 0.034 0.966 25 H 0.017 0.983 26 H 0.339 0.661 27 H 0.337 0.663 28 H 0.173 0.827 29 H 0.150 0.850 30 H 0.159 0.841 31 H 0.138 0.862 32 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.879 -12.872 3.453 15.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.230 4.230 3 Si 0.932 3.068 4 H -0.212 1.212 5 H -0.204 1.204 6 H -0.192 1.192 7 C -0.631 4.631 8 H 0.065 0.935 9 C 0.082 3.918 10 H 0.018 0.982 11 C -0.041 4.041 12 N -0.381 5.381 13 C -0.152 4.152 14 C -0.093 4.093 15 N -0.189 5.189 16 H 0.268 0.732 17 C -0.024 4.024 18 C -0.154 4.154 19 C -0.119 4.119 20 C -0.174 4.174 21 C -0.111 4.111 22 C -0.143 4.143 23 H 0.071 0.929 24 H 0.052 0.948 25 H 0.035 0.965 26 H 0.151 0.849 27 H 0.150 0.850 28 H 0.190 0.810 29 H 0.168 0.832 30 H 0.177 0.823 31 H 0.156 0.844 32 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 7.325 -10.812 3.868 13.621 hybrid contribution 0.814 -1.825 -0.965 2.219 sum 8.139 -12.637 2.903 15.309 Atomic orbital electron populations 1.70855 1.07862 1.30563 1.48268 1.27172 0.96593 1.06131 0.93107 0.83033 0.74187 0.71859 0.77696 1.21211 1.20356 1.19165 1.22258 0.94206 0.92462 1.54217 0.93460 1.17180 0.92488 0.90860 0.91235 0.98156 1.21786 0.93117 0.90869 0.98369 1.58733 1.46212 1.08706 1.24462 1.20704 0.98171 1.00135 0.96162 1.21532 0.95456 0.94259 0.98076 1.41499 1.21569 1.35739 1.20061 0.73246 1.18540 0.91895 0.99768 0.92230 1.20362 1.01713 1.00320 0.92963 1.21150 0.92720 0.98890 0.99185 1.20846 1.00501 0.97875 0.98160 1.20391 0.97148 0.98925 0.94588 1.19532 0.97060 1.00165 0.97576 0.92946 0.94780 0.96472 0.84909 0.85050 0.80965 0.83211 0.82298 0.84410 0.89007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.76 13.57 21.45 0.29 -58.47 16 2 C -0.03 -1.84 5.45 84.65 0.46 -1.38 16 3 Si 1.11 51.13 29.91 68.60 2.05 53.18 16 4 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 5 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 6 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 7 C -0.59 -33.49 8.21 25.60 0.21 -33.28 16 8 H 0.05 2.61 7.64 -2.91 -0.02 2.59 16 9 C 0.10 5.30 1.99 -12.29 -0.02 5.28 16 10 H 0.00 0.01 7.03 -2.39 -0.02 0.00 16 11 C 0.09 4.18 6.02 86.31 0.52 4.70 16 12 N -0.85 -33.97 9.62 -186.72 -1.80 -35.76 16 13 C -0.14 -6.44 4.08 -18.63 -0.08 -6.52 16 14 C 0.03 1.15 11.02 83.00 0.91 2.07 16 15 N -0.58 -17.13 6.07 -187.61 -1.14 -18.27 16 16 H 0.43 8.69 8.96 -92.71 -0.83 7.86 16 17 C 0.08 2.78 7.28 39.03 0.28 3.07 16 18 C -0.13 -3.46 10.08 22.37 0.23 -3.24 16 19 C -0.10 -2.51 10.01 22.29 0.22 -2.29 16 20 C -0.15 -4.71 9.97 22.03 0.22 -4.49 16 21 C -0.09 -3.64 10.05 22.23 0.22 -3.42 16 22 C -0.14 -5.74 6.35 -20.20 -0.13 -5.87 16 23 H 0.26 16.69 6.31 -92.71 -0.59 16.11 16 24 H 0.03 1.78 7.69 -2.38 -0.02 1.76 16 25 H 0.02 0.75 7.86 -2.39 -0.02 0.73 16 26 H 0.34 11.33 9.08 -89.70 -0.81 10.52 16 27 H 0.34 12.93 8.09 -89.70 -0.73 12.21 16 28 H 0.17 5.71 8.06 -2.91 -0.02 5.69 16 29 H 0.15 2.73 8.06 -2.91 -0.02 2.71 16 30 H 0.16 2.65 8.06 -2.91 -0.02 2.62 16 31 H 0.14 3.44 8.06 -2.91 -0.02 3.42 16 32 H 0.09 4.00 8.06 -2.91 -0.02 3.98 16 Total: -1.00 -70.52 273.96 1.43 -69.09 By element: Atomic # 1 Polarization: 36.63 SS G_CDS: -1.03 Total: 35.61 kcal Atomic # 6 Polarization: -48.42 SS G_CDS: 3.05 Total: -45.37 kcal Atomic # 7 Polarization: -109.86 SS G_CDS: -2.64 Total: -112.50 kcal Atomic # 14 Polarization: 51.13 SS G_CDS: 2.05 Total: 53.18 kcal Total: -70.52 1.43 -69.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261258810.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.950 kcal (2) G-P(sol) polarization free energy of solvation -70.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds