Wall clock time and date at job start Mon Mar 30 2020 03:08:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39127 * 126.23948 * 2 1 4 4 C 1.39917 * 125.68932 * 359.44271 * 3 2 1 5 5 H 1.08006 * 120.00093 * 0.53182 * 4 3 2 6 6 C 1.40184 * 120.00246 * 180.52288 * 4 3 2 7 7 N 1.30753 * 119.99921 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 120.00282 * 180.02562 * 6 4 3 9 9 H 1.48506 * 109.46785 * 0.02562 * 8 6 4 10 10 H 1.48490 * 109.47243 * 120.00112 * 8 6 4 11 11 H 1.48502 * 109.47324 * 240.00619 * 8 6 4 12 12 N 1.38302 * 108.62280 * 179.91711 * 3 2 1 13 13 H 0.97000 * 125.61932 * 179.54848 * 12 3 2 14 14 C 1.38279 * 108.76648 * 359.52754 * 12 3 2 15 15 C 1.38929 * 132.62749 * 180.02562 * 14 12 3 16 16 C 1.37859 * 120.12848 * 179.73947 * 15 14 12 17 17 C 1.50699 * 119.68456 * 180.27714 * 16 15 14 18 18 C 1.39562 * 120.62864 * 0.26086 * 16 15 14 19 19 N 1.39949 * 119.84716 * 180.02562 * 18 16 15 20 20 C 1.37990 * 120.30364 * 359.97438 * 18 16 15 21 21 C 1.40501 * 119.63022 * 359.97438 * 20 18 16 22 22 H 1.08994 * 109.47525 * 270.72766 * 1 2 3 23 23 H 1.09010 * 109.46662 * 30.72614 * 1 2 3 24 24 H 1.08998 * 109.47474 * 150.71928 * 1 2 3 25 25 H 0.97006 * 119.99840 * 179.97438 * 7 6 4 26 26 H 1.08002 * 119.94026 * 0.02562 * 15 14 12 27 27 H 1.08999 * 109.46599 * 90.00386 * 17 16 15 28 28 H 1.09000 * 109.46892 * 210.00414 * 17 16 15 29 29 H 1.08994 * 109.46905 * 330.00606 * 17 16 15 30 30 H 0.96995 * 120.00438 * 359.97438 * 19 18 16 31 31 H 0.97001 * 119.99425 * 179.97438 * 19 18 16 32 32 H 1.07992 * 120.18455 * 179.97438 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3294 1.1221 0.0000 4 6 1.8955 2.4523 -0.0111 5 1 0.8387 2.6756 -0.0119 6 6 2.8322 3.4952 -0.0208 7 7 4.1115 3.2249 -0.0200 8 14 2.2528 5.2710 -0.0348 9 1 0.7682 5.3072 -0.0328 10 1 2.7662 5.9687 1.1712 11 1 2.7632 5.9486 -1.2536 12 7 3.6476 0.7036 0.0019 13 1 4.4247 1.2841 -0.0039 14 6 3.6753 -0.6789 0.0139 15 6 4.7162 -1.5990 0.0210 16 6 4.4449 -2.9506 0.0384 17 6 5.5817 -3.9398 0.0523 18 6 3.1276 -3.4113 0.0437 19 7 2.8709 -4.7870 0.0620 20 6 2.0770 -2.5168 0.0320 21 6 2.3399 -1.1367 0.0153 22 1 -0.3634 0.0130 1.0275 23 1 -0.3633 0.8835 -0.5251 24 1 -0.3634 -0.8963 -0.5026 25 1 4.7596 3.9466 -0.0271 26 1 5.7399 -1.2549 0.0175 27 1 5.8548 -4.1649 1.0833 28 1 5.2719 -4.8562 -0.4499 29 1 6.4405 -3.5137 -0.4663 30 1 3.6077 -5.4178 0.0706 31 1 1.9562 -5.1096 0.0660 32 1 1.0584 -2.8754 0.0356 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261263459.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:17 Heat of formation + Delta-G solvation = 22.588626 kcal Electronic energy + Delta-G solvation = -15462.493395 eV Core-core repulsion = 13000.642140 eV Total energy + Delta-G solvation = -2461.851255 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.63744 -36.93599 -33.85140 -32.49093 -31.37466 -30.41638 -27.53112 -26.82822 -25.40888 -23.45015 -21.19512 -19.71266 -18.42938 -17.28991 -16.19988 -15.68965 -15.26586 -14.84217 -13.70601 -13.42170 -13.10370 -12.69260 -12.61120 -12.52319 -11.87352 -11.57840 -11.47194 -11.44169 -11.33641 -11.09389 -10.95782 -10.71240 -10.49045 -10.00324 -9.69414 -9.55733 -8.64888 -8.10354 -7.14197 -6.68390 -5.94372 -4.43036 2.33488 2.88380 2.94875 3.01706 3.07212 3.73956 3.90355 4.67439 4.98060 5.10268 5.26530 5.75116 5.87185 6.05355 6.16168 6.33345 6.48524 6.58914 6.70493 6.78964 6.86673 6.94651 7.01120 7.16533 7.27398 7.41269 7.50155 7.62740 7.82083 7.91551 8.10082 8.38632 8.51766 8.57027 8.73267 8.99303 9.58463 9.90467 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.042619 B = 0.007191 C = 0.006180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.830312 B = 3893.034228 C = 4529.404394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 C -0.362 4.362 3 C 0.302 3.698 4 C -0.435 4.435 5 H 0.100 0.900 6 C 0.068 3.932 7 N -0.830 5.830 8 Si 0.934 3.066 9 H -0.257 1.257 10 H -0.272 1.272 11 H -0.272 1.272 12 N -0.592 5.592 13 H 0.422 0.578 14 C 0.006 3.994 15 C -0.078 4.078 16 C -0.209 4.209 17 C -0.084 4.084 18 C 0.193 3.807 19 N -0.895 5.895 20 C -0.216 4.216 21 C 0.006 3.994 22 H 0.027 0.973 23 H 0.041 0.959 24 H 0.032 0.968 25 H 0.291 0.709 26 H 0.098 0.902 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.051 0.949 30 H 0.385 0.615 31 H 0.386 0.614 32 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.457 -4.969 0.008 4.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.367 4.367 3 C 0.189 3.811 4 C -0.468 4.468 5 H 0.118 0.882 6 C -0.147 4.147 7 N -0.461 5.461 8 Si 0.758 3.242 9 H -0.180 1.180 10 H -0.197 1.197 11 H -0.197 1.197 12 N -0.208 5.208 13 H 0.270 0.730 14 C -0.099 4.099 15 C -0.100 4.100 16 C -0.213 4.213 17 C -0.141 4.141 18 C 0.092 3.908 19 N -0.438 5.438 20 C -0.240 4.240 21 C 0.001 3.999 22 H 0.046 0.954 23 H 0.060 0.940 24 H 0.051 0.949 25 H 0.102 0.898 26 H 0.116 0.884 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.213 0.787 31 H 0.213 0.787 32 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 0.839 -4.692 0.004 4.766 hybrid contribution 0.250 0.653 0.011 0.699 sum 1.089 -4.039 0.016 4.183 Atomic orbital electron populations 1.19513 0.92225 0.98982 0.98327 1.19046 0.93634 0.90348 1.33690 1.17876 0.81402 0.92704 0.89135 1.19148 0.95435 0.88299 1.43963 0.88188 1.26147 0.94119 1.03191 0.91268 1.68779 1.02317 1.36046 1.38915 0.85809 0.80357 0.79390 0.78631 1.18039 1.19683 1.19677 1.43027 1.08675 1.03370 1.65683 0.73032 1.18311 0.94849 0.84659 1.12042 1.19398 0.95699 0.90996 1.03864 1.18492 0.92033 0.93022 1.17772 1.20339 0.96401 0.97234 1.00160 1.17046 0.92580 0.83144 0.98019 1.42353 1.08939 1.03883 1.88592 1.19588 0.95868 0.91190 1.17380 1.17698 0.92196 0.91897 0.98145 0.95423 0.93979 0.94878 0.89778 0.88419 0.93394 0.93450 0.92985 0.78674 0.78749 0.88409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -0.73 10.11 36.00 0.36 -0.36 16 2 C -0.36 -9.32 6.26 -103.28 -0.65 -9.97 16 3 C 0.30 8.06 6.67 -83.99 -0.56 7.50 16 4 C -0.43 -11.04 9.03 -38.22 -0.35 -11.39 16 5 H 0.10 2.41 7.19 -52.48 -0.38 2.04 16 6 C 0.07 1.61 5.50 -17.28 -0.10 1.51 16 7 N -0.83 -19.86 10.61 55.56 0.59 -19.27 16 8 Si 0.93 17.70 29.56 -169.99 -5.03 12.67 16 9 H -0.26 -4.80 7.11 56.52 0.40 -4.40 16 10 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 11 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 12 N -0.59 -15.43 5.85 -8.25 -0.05 -15.48 16 13 H 0.42 10.76 6.18 -40.82 -0.25 10.51 16 14 C 0.01 0.16 7.24 -83.59 -0.60 -0.44 16 15 C -0.08 -1.72 9.68 -39.46 -0.38 -2.11 16 16 C -0.21 -4.19 5.91 -104.27 -0.62 -4.81 16 17 C -0.08 -1.31 9.55 36.01 0.34 -0.97 16 18 C 0.19 3.89 6.72 -83.75 -0.56 3.32 16 19 N -0.89 -13.75 8.99 32.42 0.29 -13.46 16 20 C -0.22 -4.85 9.95 -38.82 -0.39 -5.24 16 21 C 0.01 0.15 6.08 -106.91 -0.65 -0.50 16 22 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.04 0.88 7.47 -51.92 -0.39 0.49 16 24 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.29 6.26 8.29 -40.82 -0.34 5.92 16 26 H 0.10 1.97 8.06 -52.49 -0.42 1.55 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.05 0.64 6.51 -51.93 -0.34 0.31 16 29 H 0.05 0.76 8.08 -51.93 -0.42 0.34 16 30 H 0.39 5.06 6.79 -40.82 -0.28 4.78 16 31 H 0.39 5.19 8.84 -40.82 -0.36 4.83 16 32 H 0.10 2.04 8.06 -52.49 -0.42 1.61 16 LS Contribution 268.92 15.07 4.05 4.05 Total: -1.00 -27.71 268.92 -7.94 -35.65 By element: Atomic # 1 Polarization: 22.94 SS G_CDS: -3.66 Total: 19.28 kcal Atomic # 6 Polarization: -19.31 SS G_CDS: -4.14 Total: -23.45 kcal Atomic # 7 Polarization: -49.04 SS G_CDS: 0.83 Total: -48.21 kcal Atomic # 14 Polarization: 17.70 SS G_CDS: -5.03 Total: 12.67 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -27.71 -7.94 -35.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261263459.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.241 kcal (2) G-P(sol) polarization free energy of solvation -27.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds