Wall clock time and date at job start Mon Mar 30 2020 03:08:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39127 * 126.23948 * 2 1 4 4 C 1.39917 * 125.68932 * 359.44271 * 3 2 1 5 5 H 1.08006 * 120.00093 * 0.53182 * 4 3 2 6 6 C 1.40184 * 120.00246 * 180.52288 * 4 3 2 7 7 N 1.30753 * 119.99921 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 120.00282 * 180.02562 * 6 4 3 9 9 H 1.48506 * 109.46785 * 0.02562 * 8 6 4 10 10 H 1.48490 * 109.47243 * 120.00112 * 8 6 4 11 11 H 1.48502 * 109.47324 * 240.00619 * 8 6 4 12 12 N 1.38302 * 108.62280 * 179.91711 * 3 2 1 13 13 H 0.97000 * 125.61932 * 179.54848 * 12 3 2 14 14 C 1.38279 * 108.76648 * 359.52754 * 12 3 2 15 15 C 1.38929 * 132.62749 * 180.02562 * 14 12 3 16 16 C 1.37859 * 120.12848 * 179.73947 * 15 14 12 17 17 C 1.50699 * 119.68456 * 180.27714 * 16 15 14 18 18 C 1.39562 * 120.62864 * 0.26086 * 16 15 14 19 19 N 1.39949 * 119.84716 * 180.02562 * 18 16 15 20 20 C 1.37990 * 120.30364 * 359.97438 * 18 16 15 21 21 C 1.40501 * 119.63022 * 359.97438 * 20 18 16 22 22 H 1.08994 * 109.47525 * 270.72766 * 1 2 3 23 23 H 1.09010 * 109.46662 * 30.72614 * 1 2 3 24 24 H 1.08998 * 109.47474 * 150.71928 * 1 2 3 25 25 H 0.97006 * 119.99840 * 179.97438 * 7 6 4 26 26 H 1.08002 * 119.94026 * 0.02562 * 15 14 12 27 27 H 1.08999 * 109.46599 * 90.00386 * 17 16 15 28 28 H 1.09000 * 109.46892 * 210.00414 * 17 16 15 29 29 H 1.08994 * 109.46905 * 330.00606 * 17 16 15 30 30 H 0.96995 * 120.00438 * 359.97438 * 19 18 16 31 31 H 0.97001 * 119.99425 * 179.97438 * 19 18 16 32 32 H 1.07992 * 120.18455 * 179.97438 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3294 1.1221 0.0000 4 6 1.8955 2.4523 -0.0111 5 1 0.8387 2.6756 -0.0119 6 6 2.8322 3.4952 -0.0208 7 7 4.1115 3.2249 -0.0200 8 14 2.2528 5.2710 -0.0348 9 1 0.7682 5.3072 -0.0328 10 1 2.7662 5.9687 1.1712 11 1 2.7632 5.9486 -1.2536 12 7 3.6476 0.7036 0.0019 13 1 4.4247 1.2841 -0.0039 14 6 3.6753 -0.6789 0.0139 15 6 4.7162 -1.5990 0.0210 16 6 4.4449 -2.9506 0.0384 17 6 5.5817 -3.9398 0.0523 18 6 3.1276 -3.4113 0.0437 19 7 2.8709 -4.7870 0.0620 20 6 2.0770 -2.5168 0.0320 21 6 2.3399 -1.1367 0.0153 22 1 -0.3634 0.0130 1.0275 23 1 -0.3633 0.8835 -0.5251 24 1 -0.3634 -0.8963 -0.5026 25 1 4.7596 3.9466 -0.0271 26 1 5.7399 -1.2549 0.0175 27 1 5.8548 -4.1649 1.0833 28 1 5.2719 -4.8562 -0.4499 29 1 6.4405 -3.5137 -0.4663 30 1 3.6077 -5.4178 0.0706 31 1 1.9562 -5.1096 0.0660 32 1 1.0584 -2.8754 0.0356 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261263459.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:17 Heat of formation + Delta-G solvation = 6.131506 kcal Electronic energy + Delta-G solvation = -15463.207029 eV Core-core repulsion = 13000.642140 eV Total energy + Delta-G solvation = -2462.564889 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.41448 -38.57868 -35.59934 -34.09122 -33.11641 -32.04524 -29.29601 -28.42759 -27.13291 -25.14679 -22.90155 -21.42660 -20.17682 -19.13537 -17.87620 -17.21201 -16.90680 -16.49881 -15.31247 -15.10975 -14.75224 -14.29473 -14.19283 -14.15405 -13.45941 -13.27451 -13.13575 -13.00934 -12.99567 -12.61057 -12.46513 -12.35228 -12.16392 -11.70357 -11.37802 -11.28358 -10.30397 -9.86541 -8.89545 -8.47388 -7.63053 -6.29324 0.60143 1.32762 1.38137 1.39332 1.56427 2.13127 2.16179 3.13560 3.28094 3.34737 3.45274 4.19830 4.40992 4.61394 4.74362 4.86335 4.95629 4.97422 5.07921 5.08928 5.14648 5.20515 5.30532 5.49974 5.52981 5.67929 5.82199 5.85329 6.05439 6.15817 6.34382 6.64488 6.81754 6.98981 7.13456 7.33491 7.69424 8.17231 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.042619 B = 0.007191 C = 0.006180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.830312 B = 3893.034228 C = 4529.404394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.026 4.026 2 C -0.393 4.393 3 C 0.265 3.735 4 C -0.467 4.467 5 H 0.101 0.899 6 C 0.029 3.971 7 N -0.854 5.854 8 Si 1.009 2.991 9 H -0.254 1.254 10 H -0.264 1.264 11 H -0.264 1.264 12 N -0.600 5.600 13 H 0.418 0.582 14 C -0.031 4.031 15 C -0.090 4.090 16 C -0.202 4.202 17 C -0.083 4.083 18 C 0.199 3.801 19 N -0.874 5.874 20 C -0.232 4.232 21 C -0.025 4.025 22 H 0.032 0.968 23 H 0.043 0.957 24 H 0.045 0.955 25 H 0.300 0.700 26 H 0.111 0.889 27 H 0.064 0.936 28 H 0.072 0.928 29 H 0.062 0.938 30 H 0.401 0.599 31 H 0.399 0.601 32 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.884 -6.243 0.011 6.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.398 4.398 3 C 0.152 3.848 4 C -0.500 4.500 5 H 0.119 0.881 6 C -0.184 4.184 7 N -0.484 5.484 8 Si 0.829 3.171 9 H -0.177 1.177 10 H -0.189 1.189 11 H -0.189 1.189 12 N -0.216 5.216 13 H 0.265 0.735 14 C -0.136 4.136 15 C -0.111 4.111 16 C -0.206 4.206 17 C -0.140 4.140 18 C 0.095 3.905 19 N -0.419 5.419 20 C -0.256 4.256 21 C -0.030 4.030 22 H 0.051 0.949 23 H 0.062 0.938 24 H 0.064 0.936 25 H 0.112 0.888 26 H 0.130 0.870 27 H 0.083 0.917 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.232 0.768 31 H 0.227 0.773 32 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 1.271 -6.043 0.008 6.175 hybrid contribution 0.216 0.804 0.015 0.833 sum 1.487 -5.239 0.023 5.446 Atomic orbital electron populations 1.19479 0.90415 0.99620 0.98795 1.19569 0.95260 0.90624 1.34308 1.18356 0.82022 0.93781 0.90600 1.19391 0.96036 0.88787 1.45826 0.88060 1.27075 0.93944 1.07226 0.90127 1.68804 1.03302 1.37663 1.38666 0.84718 0.79890 0.73621 0.78898 1.17682 1.18914 1.18888 1.43052 1.08410 1.03899 1.66263 0.73523 1.18781 0.96022 0.84686 1.14096 1.19753 0.95811 0.91707 1.03864 1.19079 0.93705 0.93141 1.14718 1.20428 0.94937 0.96869 1.01778 1.17155 0.92119 0.84923 0.96253 1.42232 1.10517 1.02058 1.87051 1.19787 0.97254 0.90573 1.17981 1.18042 0.92375 0.93136 0.99456 0.94911 0.93799 0.93639 0.88816 0.87050 0.91710 0.90967 0.91883 0.76832 0.77283 0.87327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -1.16 10.11 71.24 0.72 -0.44 16 2 C -0.39 -20.97 6.26 -18.99 -0.12 -21.09 16 3 C 0.27 14.83 6.67 38.74 0.26 15.09 16 4 C -0.47 -24.65 9.03 23.15 0.21 -24.44 16 5 H 0.10 5.08 7.19 -2.91 -0.02 5.06 16 6 C 0.03 1.39 5.50 85.33 0.47 1.86 16 7 N -0.85 -41.88 10.61 21.87 0.23 -41.64 16 8 Si 1.01 36.34 29.56 68.60 2.03 38.37 16 9 H -0.25 -8.89 7.11 99.48 0.71 -8.18 16 10 H -0.26 -9.15 7.11 99.48 0.71 -8.44 16 11 H -0.26 -9.13 7.11 99.48 0.71 -8.42 16 12 N -0.60 -32.77 5.85 -180.02 -1.05 -33.82 16 13 H 0.42 22.37 6.18 -92.71 -0.57 21.79 16 14 C -0.03 -1.62 7.24 39.01 0.28 -1.34 16 15 C -0.09 -3.96 9.68 22.35 0.22 -3.74 16 16 C -0.20 -7.66 5.91 -19.63 -0.12 -7.77 16 17 C -0.08 -2.25 9.55 71.24 0.68 -1.57 16 18 C 0.20 7.56 6.72 38.11 0.26 7.82 16 19 N -0.87 -23.62 8.99 -51.35 -0.46 -24.08 16 20 C -0.23 -10.27 9.95 22.76 0.23 -10.04 16 21 C -0.02 -1.28 6.08 -21.35 -0.13 -1.41 16 22 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 23 H 0.04 1.89 7.47 -2.38 -0.02 1.87 16 24 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 25 H 0.30 13.09 8.29 -92.70 -0.77 12.32 16 26 H 0.11 4.45 8.06 -2.91 -0.02 4.43 16 27 H 0.06 1.59 8.14 -2.39 -0.02 1.58 16 28 H 0.07 1.60 6.51 -2.39 -0.02 1.59 16 29 H 0.06 1.60 8.08 -2.39 -0.02 1.58 16 30 H 0.40 8.65 6.79 -92.71 -0.63 8.02 16 31 H 0.40 9.27 8.84 -92.71 -0.82 8.45 16 32 H 0.11 4.43 8.06 -2.91 -0.02 4.40 16 Total: -1.00 -61.87 268.92 2.85 -59.01 By element: Atomic # 1 Polarization: 50.10 SS G_CDS: -0.85 Total: 49.25 kcal Atomic # 6 Polarization: -50.04 SS G_CDS: 2.95 Total: -47.09 kcal Atomic # 7 Polarization: -98.26 SS G_CDS: -1.28 Total: -99.54 kcal Atomic # 14 Polarization: 36.34 SS G_CDS: 2.03 Total: 38.37 kcal Total: -61.87 2.85 -59.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261263459.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.146 kcal (2) G-P(sol) polarization free energy of solvation -61.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds