Wall clock time and date at job start Mon Mar 30 2020 03:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00098 * 2 1 4 4 H 1.48498 * 109.47412 * 240.00156 * 3 2 1 5 5 H 1.48504 * 109.47318 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47252 * 120.00568 * 3 2 1 7 7 C 1.37884 * 120.00275 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00060 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99612 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47299 * 180.02562 * 9 7 2 11 11 H 1.08994 * 109.47474 * 305.00891 * 10 9 7 12 12 N 1.46912 * 109.46828 * 65.00450 * 10 9 7 13 13 C 1.50694 * 109.47358 * 185.00030 * 10 9 7 14 14 C 1.38837 * 119.67077 * 280.02402 * 13 10 9 15 15 C 1.36626 * 120.53059 * 180.02562 * 14 13 10 16 16 C 1.39630 * 119.76271 * 359.95930 * 15 14 13 17 17 C 1.46491 * 134.02980 * 180.35749 * 16 15 14 18 18 C 1.34239 * 106.99536 * 180.11133 * 17 16 15 19 19 N 1.36835 * 109.93059 * 359.59412 * 18 17 16 20 20 H 0.97000 * 125.05993 * 180.26870 * 19 18 17 21 21 C 1.37688 * 109.87251 * 0.26493 * 19 18 17 22 22 C 1.37748 * 119.66783 * 100.00577 * 13 10 9 23 23 H 0.97002 * 119.99639 * 359.97438 * 1 2 3 24 24 H 1.09007 * 109.47204 * 60.00591 * 9 7 2 25 25 H 1.09000 * 109.47468 * 300.00890 * 9 7 2 26 26 H 1.00901 * 110.99672 * 59.99964 * 12 10 9 27 27 H 1.00900 * 110.99901 * 183.95616 * 12 10 9 28 28 H 1.08003 * 119.73163 * 359.97438 * 14 13 10 29 29 H 1.07998 * 120.11907 * 179.97438 * 15 14 13 30 30 H 1.07993 * 126.50256 * 359.97438 * 17 16 15 31 31 H 1.08002 * 125.03689 * 179.86393 * 18 17 16 32 32 H 1.08008 * 120.10697 * 0.04134 * 22 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 1 2.9294 -3.5552 -0.8422 12 7 3.0083 -3.6539 1.2549 13 6 1.4958 -4.9636 -0.1244 14 6 0.8937 -5.5193 0.9965 15 6 0.2104 -6.6988 0.9043 16 6 0.1158 -7.3507 -0.3269 17 6 -0.5247 -8.5890 -0.7767 18 6 -0.2726 -8.7065 -2.0900 19 7 0.4693 -7.6401 -2.5197 20 1 0.7708 -7.5023 -3.4313 21 6 0.7240 -6.7918 -1.4655 22 6 1.4148 -5.5899 -1.3486 23 1 -0.4850 0.8401 0.0004 24 1 0.6241 -2.5567 -0.8904 25 1 0.6246 -2.5570 0.8896 26 1 2.3959 -3.7517 2.0508 27 1 3.7160 -4.3731 1.2525 28 1 0.9668 -5.0155 1.9490 29 1 -0.2551 -7.1253 1.7805 30 1 -1.0904 -9.2778 -0.1670 31 1 -0.6095 -9.5198 -2.7156 32 1 1.8869 -5.1498 -2.2146 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261268465.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:48 Heat of formation + Delta-G solvation = 49.240574 kcal Electronic energy + Delta-G solvation = -15126.292977 eV Core-core repulsion = 12665.597438 eV Total energy + Delta-G solvation = -2460.695539 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.98521 -37.65963 -34.43308 -32.32769 -31.52183 -29.14271 -28.46773 -27.88039 -24.08424 -22.54503 -21.62932 -20.54029 -19.47762 -17.57934 -16.36915 -15.85514 -15.20665 -14.69273 -14.36134 -14.22899 -13.96024 -13.50339 -13.17938 -12.77747 -12.39357 -12.13739 -11.43784 -11.39374 -11.01659 -10.88564 -10.56514 -10.49372 -10.11827 -9.67065 -9.24280 -9.03817 -8.24869 -7.97753 -7.77020 -7.44093 -5.86400 -3.85248 1.41864 1.94561 2.86953 3.26812 3.43082 3.46505 3.50460 4.21948 4.58498 4.88127 5.02196 5.31490 5.41432 5.45050 5.53837 5.61581 5.69686 5.86666 6.03185 6.12532 6.32474 6.39040 6.79923 6.82252 6.87694 6.96144 7.12325 7.44931 7.61977 7.65352 7.77925 8.05497 8.14996 8.26106 8.58494 9.20833 9.76335 11.25302 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.045949 B = 0.005561 C = 0.005405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.230411 B = 5033.659167 C = 5179.555813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.050 3.950 3 Si 0.893 3.107 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.494 4.494 8 H 0.062 0.938 9 C 0.038 3.962 10 C 0.133 3.867 11 H 0.076 0.924 12 N -0.821 5.821 13 C -0.074 4.074 14 C -0.138 4.138 15 C -0.074 4.074 16 C -0.123 4.123 17 C -0.205 4.205 18 C 0.038 3.962 19 N -0.600 5.600 20 H 0.412 0.588 21 C 0.098 3.902 22 C -0.131 4.131 23 H 0.258 0.742 24 H 0.019 0.981 25 H 0.017 0.983 26 H 0.334 0.666 27 H 0.321 0.679 28 H 0.120 0.880 29 H 0.117 0.883 30 H 0.141 0.859 31 H 0.165 0.835 32 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.588 -16.874 -2.647 17.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.149 4.149 3 Si 0.721 3.279 4 H -0.205 1.205 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.533 4.533 8 H 0.080 0.920 9 C 0.000 4.000 10 C 0.021 3.979 11 H 0.094 0.906 12 N -0.347 5.347 13 C -0.077 4.077 14 C -0.157 4.157 15 C -0.093 4.093 16 C -0.128 4.128 17 C -0.231 4.231 18 C -0.088 4.088 19 N -0.203 5.203 20 H 0.249 0.751 21 C -0.008 4.008 22 C -0.153 4.153 23 H 0.068 0.932 24 H 0.037 0.963 25 H 0.036 0.964 26 H 0.148 0.852 27 H 0.132 0.868 28 H 0.138 0.862 29 H 0.135 0.865 30 H 0.159 0.841 31 H 0.182 0.818 32 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.690 -15.994 -2.968 16.282 hybrid contribution -0.013 -0.047 -0.374 0.377 sum 0.676 -16.041 -3.342 16.400 Atomic orbital electron populations 1.69968 1.06015 1.26402 1.51965 1.25024 0.94789 0.99133 0.95976 0.86651 0.79450 0.83271 0.78513 1.20496 1.21646 1.20303 1.21139 0.93332 0.90119 1.48673 0.92024 1.19121 0.92871 0.90615 0.97356 1.20792 0.94698 0.90208 0.92208 0.90636 1.58900 1.17820 1.54001 1.04027 1.21064 0.97167 0.97354 0.92131 1.20501 1.00297 0.96157 0.98776 1.20182 0.98679 0.94931 0.95502 1.19152 1.03308 0.96928 0.93375 1.21641 1.07937 0.99036 0.94496 1.21698 0.98589 0.92526 0.95938 1.41766 1.48412 1.20104 1.10022 0.75150 1.18304 1.01216 0.93757 0.87541 1.19924 1.03438 0.93569 0.98320 0.93230 0.96272 0.96438 0.85217 0.86781 0.86236 0.86516 0.84102 0.81778 0.86397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.69 13.29 55.43 0.74 -26.96 16 2 C 0.05 1.47 5.46 -17.82 -0.10 1.37 16 3 Si 0.89 22.30 29.54 -169.99 -5.02 17.28 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.49 -14.11 8.84 -34.44 -0.30 -14.41 16 8 H 0.06 1.75 7.74 -52.49 -0.41 1.34 16 9 C 0.04 0.98 4.60 -27.89 -0.13 0.85 16 10 C 0.13 2.73 2.92 -68.86 -0.20 2.53 16 11 H 0.08 1.58 7.98 -51.93 -0.41 1.16 16 12 N -0.82 -15.41 8.77 -5.65 -0.05 -15.46 16 13 C -0.07 -1.35 4.95 -104.58 -0.52 -1.87 16 14 C -0.14 -2.35 9.21 -39.94 -0.37 -2.72 16 15 C -0.07 -1.17 10.05 -39.64 -0.40 -1.57 16 16 C -0.12 -1.95 6.37 -105.14 -0.67 -2.62 16 17 C -0.21 -2.62 11.08 -37.67 -0.42 -3.04 16 18 C 0.04 0.42 11.82 -16.73 -0.20 0.22 16 19 N -0.60 -7.27 6.07 -10.65 -0.06 -7.33 16 20 H 0.41 3.73 8.96 -40.82 -0.37 3.37 16 21 C 0.10 1.55 7.28 -83.99 -0.61 0.94 16 22 C -0.13 -2.24 9.68 -39.43 -0.38 -2.63 16 23 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 24 H 0.02 0.54 8.14 -51.92 -0.42 0.11 16 25 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.33 6.00 7.31 -39.29 -0.29 5.72 16 27 H 0.32 5.12 9.06 -39.29 -0.36 4.77 16 28 H 0.12 1.92 6.62 -52.48 -0.35 1.57 16 29 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 30 H 0.14 1.46 8.06 -52.49 -0.42 1.04 16 31 H 0.16 1.10 8.06 -52.49 -0.42 0.68 16 32 H 0.12 1.87 8.02 -52.48 -0.42 1.45 16 LS Contribution 275.71 15.07 4.15 4.15 Total: -1.00 -32.98 275.71 -8.38 -41.36 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -3.85 Total: 9.89 kcal Atomic # 6 Polarization: -18.64 SS G_CDS: -4.29 Total: -22.94 kcal Atomic # 7 Polarization: -50.37 SS G_CDS: 0.62 Total: -49.75 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -32.98 -8.38 -41.36 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261268465.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.605 kcal (2) G-P(sol) polarization free energy of solvation -32.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds