Wall clock time and date at job start Mon Mar 30 2020 03:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 H 1.09000 * 109.47017 * 54.99395 * 10 9 7 12 12 N 1.46908 * 109.46833 * 294.99820 * 10 9 7 13 13 C 1.50695 * 109.47310 * 174.99934 * 10 9 7 14 14 C 1.38833 * 119.66814 * 79.99746 * 13 10 9 15 15 C 1.36625 * 120.52851 * 179.97438 * 14 13 10 16 16 C 1.39627 * 119.76161 * 0.02562 * 15 14 13 17 17 C 1.46489 * 134.02540 * 180.02562 * 16 15 14 18 18 C 1.34239 * 106.99474 * 179.97438 * 17 16 15 19 19 N 1.36828 * 109.93160 * 0.02562 * 18 17 16 20 20 H 0.96998 * 125.06610 * 179.97438 * 19 18 17 21 21 C 1.37685 * 109.87326 * 359.97438 * 19 18 17 22 22 C 1.37747 * 119.66387 * 259.72432 * 13 10 9 23 23 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 25 25 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 26 26 H 1.00902 * 111.00072 * 299.99814 * 12 10 9 27 27 H 1.00901 * 110.99845 * 63.95541 * 12 10 9 28 28 H 1.08004 * 119.73645 * 359.97438 * 14 13 10 29 29 H 1.08001 * 120.11689 * 180.02562 * 15 14 13 30 30 H 1.08004 * 126.50517 * 359.97438 * 17 16 15 31 31 H 1.08002 * 125.03616 * 180.02562 * 18 17 16 32 32 H 1.07993 * 120.11488 * 0.02562 * 22 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 1 2.9292 -3.5590 0.8318 12 7 3.0083 -3.6484 -1.2657 13 6 1.4957 -4.9642 0.1075 14 6 0.8941 -5.5151 -1.0159 15 6 0.2107 -6.6950 -0.9291 16 6 0.1159 -7.3522 0.2992 17 6 -0.5189 -8.5960 0.7419 18 6 -0.2720 -8.7163 2.0559 19 7 0.4683 -7.6510 2.4909 20 1 0.7690 -7.5168 3.4033 21 6 0.7229 -6.7979 1.4406 22 6 1.4193 -5.5987 1.3278 23 1 -0.4850 0.8401 -0.0004 24 1 0.6242 -2.5609 0.8844 25 1 0.6244 -2.5529 -0.8956 26 1 2.3960 -3.7427 -2.0622 27 1 3.5700 -2.8134 -1.3381 28 1 0.9668 -5.0068 -1.9661 29 1 -0.2544 -7.1177 -1.8074 30 1 -1.0791 -9.2855 0.1277 31 1 -0.6081 -9.5330 2.6777 32 1 1.8940 -5.1642 2.1950 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261268467.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:49 Heat of formation + Delta-G solvation = 44.575070 kcal Electronic energy + Delta-G solvation = -15128.514997 eV Core-core repulsion = 12667.617146 eV Total energy + Delta-G solvation = -2460.897851 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.88161 -37.53292 -34.56389 -32.39023 -31.45622 -29.02674 -28.42513 -27.76923 -24.21960 -22.45852 -21.66259 -20.45012 -19.44481 -17.47869 -16.69595 -15.70210 -15.32705 -14.61167 -14.18252 -14.09277 -13.68293 -13.32662 -13.11071 -12.81360 -12.39281 -12.13331 -11.68377 -11.33884 -11.08308 -10.95108 -10.72678 -10.47808 -10.12609 -9.88831 -9.35729 -9.12292 -8.45370 -7.89756 -7.63575 -7.29617 -6.06593 -4.11106 1.53223 2.08660 2.96461 3.26616 3.34609 3.35325 3.38233 4.34000 4.41489 4.96828 5.10831 5.27789 5.35563 5.52417 5.66847 5.77408 5.82451 5.99142 6.09710 6.23324 6.44738 6.45300 6.76256 6.94849 6.97672 7.06239 7.24968 7.49907 7.56250 7.63611 7.74445 7.88370 8.10495 8.24939 8.37490 8.96173 9.53910 11.04038 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.046338 B = 0.005555 C = 0.005401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.110794 B = 5039.249571 C = 5183.145180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.059 3.941 3 Si 0.892 3.108 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.525 4.525 8 H 0.057 0.943 9 C 0.000 4.000 10 C 0.126 3.874 11 H 0.074 0.926 12 N -0.839 5.839 13 C -0.022 4.022 14 C -0.125 4.125 15 C -0.078 4.078 16 C -0.124 4.124 17 C -0.205 4.205 18 C 0.036 3.964 19 N -0.600 5.600 20 H 0.412 0.588 21 C 0.098 3.902 22 C -0.136 4.136 23 H 0.261 0.739 24 H 0.019 0.981 25 H 0.019 0.981 26 H 0.329 0.671 27 H 0.345 0.655 28 H 0.120 0.880 29 H 0.116 0.884 30 H 0.140 0.860 31 H 0.164 0.836 32 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.299 -14.550 2.356 14.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.563 4.563 8 H 0.076 0.924 9 C -0.038 4.038 10 C 0.015 3.985 11 H 0.092 0.908 12 N -0.368 5.368 13 C -0.024 4.024 14 C -0.145 4.145 15 C -0.097 4.097 16 C -0.128 4.128 17 C -0.231 4.231 18 C -0.089 4.089 19 N -0.204 5.204 20 H 0.248 0.752 21 C -0.008 4.008 22 C -0.157 4.157 23 H 0.070 0.930 24 H 0.038 0.962 25 H 0.037 0.963 26 H 0.141 0.859 27 H 0.159 0.841 28 H 0.138 0.862 29 H 0.134 0.866 30 H 0.158 0.842 31 H 0.181 0.819 32 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 0.535 -15.101 2.762 15.360 hybrid contribution -0.186 1.911 0.331 1.949 sum 0.349 -13.189 3.092 13.552 Atomic orbital electron populations 1.69990 1.06113 1.26596 1.50259 1.25024 0.94812 0.99300 0.95116 0.86537 0.80126 0.83747 0.77601 1.19640 1.21014 1.21036 1.21211 0.92934 0.90824 1.51319 0.92447 1.19798 0.94450 0.91597 0.97956 1.20523 0.94492 0.90629 0.92869 0.90755 1.59257 1.28018 1.45724 1.03805 1.19800 0.95453 0.95275 0.91889 1.20454 0.99382 0.96017 0.98601 1.20177 0.98969 0.95047 0.95469 1.19130 1.03489 0.96801 0.93397 1.21628 1.08097 0.98911 0.94470 1.21666 0.98865 0.92553 0.95863 1.41735 1.48549 1.20053 1.10032 0.75244 1.18218 1.01263 0.93694 0.87608 1.19821 1.03730 0.93815 0.98347 0.92975 0.96234 0.96308 0.85885 0.84127 0.86240 0.86591 0.84184 0.81888 0.86537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.52 13.29 55.43 0.74 -25.78 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 7 C -0.52 -14.26 8.55 -34.44 -0.29 -14.56 16 8 H 0.06 1.50 7.14 -52.49 -0.37 1.13 16 9 C 0.00 0.01 4.60 -27.88 -0.13 -0.12 16 10 C 0.13 2.64 2.98 -68.86 -0.21 2.43 16 11 H 0.07 1.58 7.98 -51.93 -0.41 1.16 16 12 N -0.84 -16.02 9.02 -5.65 -0.05 -16.07 16 13 C -0.02 -0.43 4.96 -104.58 -0.52 -0.95 16 14 C -0.13 -2.25 9.21 -39.94 -0.37 -2.62 16 15 C -0.08 -1.28 10.05 -39.65 -0.40 -1.68 16 16 C -0.12 -2.04 6.37 -105.14 -0.67 -2.71 16 17 C -0.21 -2.73 11.08 -37.67 -0.42 -3.15 16 18 C 0.04 0.41 11.81 -16.73 -0.20 0.21 16 19 N -0.60 -7.61 6.07 -10.65 -0.06 -7.67 16 20 H 0.41 3.93 8.96 -40.82 -0.37 3.57 16 21 C 0.10 1.62 7.28 -83.99 -0.61 1.01 16 22 C -0.14 -2.43 9.68 -39.43 -0.38 -2.82 16 23 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 24 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.33 6.00 7.31 -39.29 -0.29 5.71 16 27 H 0.35 6.67 7.90 -39.29 -0.31 6.36 16 28 H 0.12 2.03 6.62 -52.48 -0.35 1.68 16 29 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 30 H 0.14 1.52 8.06 -52.48 -0.42 1.09 16 31 H 0.16 1.17 8.06 -52.49 -0.42 0.74 16 32 H 0.12 1.93 8.02 -52.49 -0.42 1.51 16 LS Contribution 273.97 15.07 4.13 4.13 Total: -1.00 -31.49 273.97 -8.33 -39.82 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: -3.77 Total: 12.72 kcal Atomic # 6 Polarization: -19.09 SS G_CDS: -4.29 Total: -23.37 kcal Atomic # 7 Polarization: -50.15 SS G_CDS: 0.62 Total: -49.53 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -31.49 -8.33 -39.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261268467.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.392 kcal (2) G-P(sol) polarization free energy of solvation -31.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds