Wall clock time and date at job start Mon Mar 30 2020 03:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 H 1.09000 * 109.47017 * 54.99395 * 10 9 7 12 12 N 1.46908 * 109.46833 * 294.99820 * 10 9 7 13 13 C 1.50695 * 109.47310 * 174.99934 * 10 9 7 14 14 C 1.38833 * 119.66814 * 79.99746 * 13 10 9 15 15 C 1.36625 * 120.52851 * 179.97438 * 14 13 10 16 16 C 1.39627 * 119.76161 * 0.02562 * 15 14 13 17 17 C 1.46489 * 134.02540 * 180.02562 * 16 15 14 18 18 C 1.34239 * 106.99474 * 179.97438 * 17 16 15 19 19 N 1.36828 * 109.93160 * 0.02562 * 18 17 16 20 20 H 0.96998 * 125.06610 * 179.97438 * 19 18 17 21 21 C 1.37685 * 109.87326 * 359.97438 * 19 18 17 22 22 C 1.37747 * 119.66387 * 259.72432 * 13 10 9 23 23 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 25 25 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 26 26 H 1.00902 * 111.00072 * 299.99814 * 12 10 9 27 27 H 1.00901 * 110.99845 * 63.95541 * 12 10 9 28 28 H 1.08004 * 119.73645 * 359.97438 * 14 13 10 29 29 H 1.08001 * 120.11689 * 180.02562 * 15 14 13 30 30 H 1.08004 * 126.50517 * 359.97438 * 17 16 15 31 31 H 1.08002 * 125.03616 * 180.02562 * 18 17 16 32 32 H 1.07993 * 120.11488 * 0.02562 * 22 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 1 2.9292 -3.5590 0.8318 12 7 3.0083 -3.6484 -1.2657 13 6 1.4957 -4.9642 0.1075 14 6 0.8941 -5.5151 -1.0159 15 6 0.2107 -6.6950 -0.9291 16 6 0.1159 -7.3522 0.2992 17 6 -0.5189 -8.5960 0.7419 18 6 -0.2720 -8.7163 2.0559 19 7 0.4683 -7.6510 2.4909 20 1 0.7690 -7.5168 3.4033 21 6 0.7229 -6.7979 1.4406 22 6 1.4193 -5.5987 1.3278 23 1 -0.4850 0.8401 -0.0004 24 1 0.6242 -2.5609 0.8844 25 1 0.6244 -2.5529 -0.8956 26 1 2.3960 -3.7427 -2.0622 27 1 3.5700 -2.8134 -1.3381 28 1 0.9668 -5.0068 -1.9661 29 1 -0.2544 -7.1177 -1.8074 30 1 -1.0791 -9.2855 0.1277 31 1 -0.6081 -9.5330 2.6777 32 1 1.8940 -5.1642 2.1950 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261268467.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:49 Heat of formation + Delta-G solvation = 23.567213 kcal Electronic energy + Delta-G solvation = -15129.425966 eV Core-core repulsion = 12667.617146 eV Total energy + Delta-G solvation = -2461.808820 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.02051 -38.95599 -36.18133 -34.37815 -32.68610 -30.29366 -29.88602 -29.49467 -26.03982 -23.72906 -23.33558 -21.49497 -20.91175 -18.72550 -18.60765 -17.01185 -16.90380 -16.60092 -15.51987 -15.29191 -15.02017 -14.65373 -14.53604 -14.32169 -14.10848 -13.79603 -13.29108 -12.92609 -12.71891 -12.41285 -12.34853 -12.25744 -11.78542 -11.68258 -11.13363 -10.64518 -10.54172 -9.44893 -8.98379 -8.51135 -8.21448 -6.34565 0.29046 0.76799 1.39072 1.40017 1.52946 1.91918 2.33979 2.39183 3.02699 3.11095 3.81736 3.95603 4.08964 4.25208 4.35396 4.47339 4.56274 4.64415 4.83014 4.92757 4.97720 5.15218 5.21517 5.36808 5.47275 5.67598 5.75229 5.78411 5.91439 5.93651 6.15354 6.31565 6.42020 6.74427 6.80700 6.82457 7.35523 8.89523 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.046338 B = 0.005555 C = 0.005401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.110794 B = 5039.249571 C = 5183.145180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.966 3.034 4 H -0.258 1.258 5 H -0.280 1.280 6 H -0.282 1.282 7 C -0.536 4.536 8 H 0.067 0.933 9 C 0.012 3.988 10 C 0.142 3.858 11 H 0.068 0.932 12 N -0.828 5.828 13 C -0.054 4.054 14 C -0.142 4.142 15 C -0.082 4.082 16 C -0.140 4.140 17 C -0.229 4.229 18 C 0.062 3.938 19 N -0.592 5.592 20 H 0.427 0.573 21 C 0.078 3.922 22 C -0.144 4.144 23 H 0.263 0.737 24 H -0.016 1.016 25 H -0.008 1.008 26 H 0.335 0.665 27 H 0.344 0.656 28 H 0.120 0.880 29 H 0.140 0.860 30 H 0.164 0.836 31 H 0.215 0.785 32 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.638 -16.081 3.043 16.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.197 4.197 3 Si 0.791 3.209 4 H -0.182 1.182 5 H -0.206 1.206 6 H -0.208 1.208 7 C -0.573 4.573 8 H 0.085 0.915 9 C -0.026 4.026 10 C 0.030 3.970 11 H 0.086 0.914 12 N -0.356 5.356 13 C -0.056 4.056 14 C -0.162 4.162 15 C -0.100 4.100 16 C -0.145 4.145 17 C -0.254 4.254 18 C -0.064 4.064 19 N -0.196 5.196 20 H 0.265 0.735 21 C -0.029 4.029 22 C -0.165 4.165 23 H 0.071 0.929 24 H 0.002 0.998 25 H 0.011 0.989 26 H 0.147 0.853 27 H 0.157 0.843 28 H 0.137 0.863 29 H 0.158 0.842 30 H 0.182 0.818 31 H 0.231 0.769 32 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 0.895 -16.651 3.461 17.030 hybrid contribution -0.359 2.239 0.186 2.275 sum 0.535 -14.412 3.647 14.876 Atomic orbital electron populations 1.70134 1.07985 1.27665 1.51550 1.25975 0.95638 1.03381 0.94657 0.85379 0.79253 0.78737 0.77540 1.18193 1.20553 1.20812 1.21603 0.93526 0.91649 1.50567 0.91516 1.19653 0.94570 0.93524 0.94883 1.20203 0.93281 0.90136 0.93353 0.91374 1.59246 1.27601 1.45353 1.03405 1.19697 0.97337 0.95261 0.93275 1.20531 1.00359 0.97023 0.98277 1.20453 0.98380 0.94445 0.96754 1.19649 1.03432 0.98167 0.93276 1.21996 1.09237 0.98376 0.95747 1.22494 0.95912 0.92202 0.95805 1.41862 1.48073 1.19578 1.10134 0.73472 1.18274 1.01585 0.93846 0.89237 1.19914 1.04002 0.94647 0.97949 0.92865 0.99788 0.98931 0.85284 0.84259 0.86252 0.84223 0.81807 0.76872 0.86166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.04 13.29 21.45 0.28 -56.76 16 2 C 0.00 0.08 5.46 84.66 0.46 0.54 16 3 Si 0.97 43.89 29.54 68.60 2.03 45.92 16 4 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 5 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 6 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 7 C -0.54 -29.70 8.55 25.60 0.22 -29.48 16 8 H 0.07 3.50 7.14 -2.91 -0.02 3.48 16 9 C 0.01 0.66 4.60 29.85 0.14 0.80 16 10 C 0.14 6.15 2.98 44.16 0.13 6.28 16 11 H 0.07 2.99 7.98 -2.39 -0.02 2.97 16 12 N -0.83 -32.15 9.02 -171.80 -1.55 -33.70 16 13 C -0.05 -2.16 4.96 -19.84 -0.10 -2.25 16 14 C -0.14 -5.26 9.21 22.03 0.20 -5.06 16 15 C -0.08 -2.67 10.05 22.23 0.22 -2.45 16 16 C -0.14 -4.45 6.37 -20.20 -0.13 -4.58 16 17 C -0.23 -5.37 11.08 23.51 0.26 -5.11 16 18 C 0.06 1.14 11.81 83.00 0.98 2.12 16 19 N -0.59 -13.42 6.07 -187.61 -1.14 -14.56 16 20 H 0.43 6.97 8.96 -92.71 -0.83 6.14 16 21 C 0.08 2.50 7.28 39.03 0.28 2.79 16 22 C -0.14 -5.25 9.68 22.37 0.22 -5.04 16 23 H 0.26 15.08 8.31 -92.70 -0.77 14.31 16 24 H -0.02 -0.97 8.14 -2.38 -0.02 -0.99 16 25 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 26 H 0.33 12.49 7.31 -89.69 -0.66 11.83 16 27 H 0.34 13.38 7.90 -89.69 -0.71 12.67 16 28 H 0.12 4.22 6.62 -2.91 -0.02 4.20 16 29 H 0.14 3.71 8.06 -2.91 -0.02 3.69 16 30 H 0.16 2.95 8.06 -2.91 -0.02 2.93 16 31 H 0.21 1.73 8.06 -2.91 -0.02 1.71 16 32 H 0.12 4.09 8.02 -2.91 -0.02 4.07 16 Total: -1.00 -69.51 273.97 1.48 -68.04 By element: Atomic # 1 Polarization: 33.54 SS G_CDS: -1.04 Total: 32.50 kcal Atomic # 6 Polarization: -44.32 SS G_CDS: 2.89 Total: -41.43 kcal Atomic # 7 Polarization: -102.62 SS G_CDS: -2.40 Total: -105.02 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -69.51 1.48 -68.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261268467.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.603 kcal (2) G-P(sol) polarization free energy of solvation -69.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds