Wall clock time and date at job start Mon Mar 30 2020 03:05:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30247 * 126.10718 * 2 1 4 4 N 1.39873 * 110.08484 * 180.02562 * 3 2 1 5 5 H 0.97001 * 125.46213 * 179.97438 * 4 3 2 6 6 C 1.37043 * 109.07942 * 0.02562 * 4 3 2 7 7 C 1.39281 * 133.85595 * 180.02562 * 6 4 3 8 8 C 1.36585 * 119.85488 * 179.74123 * 7 6 4 9 9 C 1.38962 * 120.81553 * 0.51845 * 8 7 6 10 10 C 1.50701 * 119.68670 * 179.75670 * 9 8 7 11 11 H 1.09005 * 109.46995 * 179.72832 * 10 9 8 12 12 C 1.52999 * 109.47433 * 59.72697 * 10 9 8 13 13 C 1.50694 * 109.47169 * 299.72303 * 10 9 8 14 14 H 1.08002 * 120.00179 * 359.97438 * 13 10 9 15 15 C 1.37879 * 120.00472 * 180.02562 * 13 10 9 16 16 N 1.31514 * 119.99350 * 359.97438 * 15 13 10 17 17 Si 1.86798 * 120.00608 * 179.97438 * 15 13 10 18 18 H 1.48493 * 109.47326 * 270.00340 * 17 15 13 19 19 H 1.48506 * 109.46545 * 30.00090 * 17 15 13 20 20 H 1.48498 * 109.47210 * 149.99801 * 17 15 13 21 21 C 1.36462 * 120.62507 * 359.47779 * 9 8 7 22 22 C 1.39943 * 119.63807 * 0.25467 * 21 9 8 23 23 H 1.09002 * 109.47253 * 270.00108 * 1 2 3 24 24 H 1.09007 * 109.47429 * 29.99819 * 1 2 3 25 25 H 1.08996 * 109.47285 * 150.00106 * 1 2 3 26 26 H 1.08004 * 120.06744 * 359.97438 * 7 6 4 27 27 H 1.08002 * 119.59096 * 180.27237 * 8 7 6 28 28 H 1.09001 * 109.47411 * 180.02562 * 12 10 9 29 29 H 1.09002 * 109.46412 * 300.00110 * 12 10 9 30 30 H 1.08993 * 109.47298 * 59.99347 * 12 10 9 31 31 H 0.97005 * 119.99661 * 179.97438 * 16 15 13 32 32 H 1.08008 * 120.18193 * 180.27854 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2745 1.0523 0.0000 4 7 3.6189 0.6662 -0.0006 5 1 4.3778 1.2703 -0.0011 6 6 3.6920 -0.7023 -0.0016 7 6 4.7463 -1.6123 -0.0020 8 6 4.4870 -2.9533 0.0023 9 6 3.1802 -3.4257 -0.0036 10 6 2.9233 -4.9107 -0.0042 11 1 1.8487 -5.0935 -0.0043 12 6 3.5470 -5.5367 1.2448 13 6 3.5376 -5.5262 -1.2349 14 1 4.0613 -4.9043 -1.9458 15 6 3.4303 -6.8833 -1.4539 16 7 2.7921 -7.6405 -0.5885 17 14 4.1911 -7.6463 -2.9798 18 1 3.1979 -7.6409 -4.0837 19 1 5.3844 -6.8600 -3.3838 20 1 4.5960 -9.0442 -2.6849 21 6 2.1272 -2.5577 -0.0032 22 6 2.3669 -1.1789 -0.0021 23 1 -0.3634 0.0000 1.0277 24 1 -0.3634 0.8900 -0.5138 25 1 -0.3633 -0.8899 -0.5138 26 1 5.7667 -1.2583 -0.0019 27 1 5.3079 -3.6552 0.0065 28 1 3.3617 -6.6108 1.2442 29 1 4.6216 -5.3538 1.2448 30 1 3.1028 -5.0914 2.1349 31 1 2.7163 -8.5952 -0.7428 32 1 1.1143 -2.9327 -0.0033 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261277498.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:29 Heat of formation + Delta-G solvation = 66.455969 kcal Electronic energy + Delta-G solvation = -15327.545689 eV Core-core repulsion = 12867.596665 eV Total energy + Delta-G solvation = -2459.949024 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.82085 -37.31249 -33.90926 -32.93125 -30.96684 -29.73689 -28.15786 -27.07355 -25.11144 -22.43040 -22.29344 -20.10387 -19.25673 -17.36826 -16.41933 -15.59876 -14.86409 -14.70275 -14.36572 -13.74184 -13.27450 -12.90328 -12.83265 -12.53712 -12.31385 -11.83799 -11.61257 -11.21242 -10.93816 -10.75621 -10.63699 -10.43526 -10.23034 -10.03453 -9.57788 -9.44061 -8.94154 -8.37273 -8.07759 -7.23745 -6.00964 -4.07712 1.44913 2.16997 2.82227 3.02003 3.29818 3.36734 3.40011 4.36616 4.50579 4.79739 4.94002 5.14457 5.30060 5.65565 5.68734 5.72979 5.83252 5.94443 6.03191 6.20236 6.49523 6.55997 6.82239 6.85623 6.97583 7.13476 7.19361 7.35028 7.51003 7.69015 7.74139 7.94091 7.97293 8.10405 8.40363 8.95119 9.57075 11.04444 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.036751 B = 0.006559 C = 0.006335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.697918 B = 4267.794051 C = 4419.046457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.095 3.905 3 N -0.269 5.269 4 N -0.520 5.520 5 H 0.433 0.567 6 C 0.109 3.891 7 C -0.157 4.157 8 C -0.047 4.047 9 C -0.066 4.066 10 C 0.075 3.925 11 H 0.035 0.965 12 C -0.133 4.133 13 C -0.507 4.507 14 H 0.057 0.943 15 C 0.062 3.938 16 N -0.890 5.890 17 Si 0.891 3.109 18 H -0.281 1.281 19 H -0.274 1.274 20 H -0.287 1.287 21 C -0.062 4.062 22 C -0.173 4.173 23 H 0.079 0.921 24 H 0.073 0.927 25 H 0.082 0.918 26 H 0.116 0.884 27 H 0.130 0.870 28 H 0.085 0.915 29 H 0.027 0.973 30 H 0.009 0.991 31 H 0.260 0.740 32 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.408 11.164 2.063 11.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.083 4.083 3 N -0.085 5.085 4 N -0.236 5.236 5 H 0.276 0.724 6 C -0.005 4.005 7 C -0.179 4.179 8 C -0.068 4.068 9 C -0.067 4.067 10 C 0.057 3.943 11 H 0.053 0.947 12 C -0.191 4.191 13 C -0.546 4.546 14 H 0.075 0.925 15 C -0.139 4.139 16 N -0.529 5.529 17 Si 0.719 3.281 18 H -0.207 1.207 19 H -0.199 1.199 20 H -0.212 1.212 21 C -0.082 4.082 22 C -0.180 4.180 23 H 0.097 0.903 24 H 0.092 0.908 25 H 0.101 0.899 26 H 0.134 0.866 27 H 0.148 0.852 28 H 0.103 0.897 29 H 0.047 0.953 30 H 0.028 0.972 31 H 0.070 0.930 32 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -0.422 12.247 2.095 12.432 hybrid contribution 1.008 -0.958 -0.892 1.652 sum 0.586 11.290 1.203 11.369 Atomic orbital electron populations 1.20195 0.86197 1.03543 1.03123 1.23455 0.96423 0.89157 0.99269 1.76341 0.87669 1.23575 1.20905 1.45650 1.05145 1.03633 1.69129 0.72372 1.18747 0.95896 0.84383 1.01464 1.19768 0.96082 0.92278 1.09809 1.20778 0.97876 0.93466 0.94632 1.20204 0.91720 0.98519 0.96291 1.17842 0.97406 0.84309 0.94779 0.94692 1.21794 0.98014 1.03977 0.95265 1.21129 1.35153 0.92477 1.05810 0.92490 1.24951 0.95277 0.97245 0.96434 1.69885 1.42277 1.05485 1.35210 0.86605 0.79635 0.78477 0.83377 1.20702 1.19923 1.21247 1.20287 0.99482 0.89469 0.99003 1.19754 0.91398 0.94217 1.12671 0.90286 0.90829 0.89930 0.86640 0.85176 0.89661 0.95349 0.97228 0.92962 0.86095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.84 10.48 36.00 0.38 -0.46 16 2 C 0.09 1.51 7.43 -80.19 -0.60 0.92 16 3 N -0.27 -4.39 12.55 34.84 0.44 -3.95 16 4 N -0.52 -7.98 7.37 32.36 0.24 -7.75 16 5 H 0.43 5.11 8.96 -182.77 -1.64 3.47 16 6 C 0.11 1.90 7.34 -84.17 -0.62 1.28 16 7 C -0.16 -2.66 10.03 -39.79 -0.40 -3.06 16 8 C -0.05 -0.90 8.62 -39.91 -0.34 -1.25 16 9 C -0.07 -1.39 4.70 -104.99 -0.49 -1.88 16 10 C 0.07 1.81 2.46 -92.93 -0.23 1.59 16 11 H 0.03 0.91 7.84 -51.93 -0.41 0.50 16 12 C -0.13 -3.10 8.78 37.16 0.33 -2.78 16 13 C -0.51 -13.45 8.23 -34.44 -0.28 -13.73 16 14 H 0.06 1.51 7.60 -52.49 -0.40 1.11 16 15 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 16 N -0.89 -24.72 11.32 55.43 0.63 -24.09 16 17 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 19 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 20 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 21 C -0.06 -1.20 9.67 -39.58 -0.38 -1.58 16 22 C -0.17 -3.15 6.33 -105.21 -0.67 -3.81 16 23 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 26 H 0.12 1.60 8.06 -52.48 -0.42 1.17 16 27 H 0.13 2.46 7.52 -52.49 -0.39 2.07 16 28 H 0.08 2.19 6.07 -51.93 -0.32 1.88 16 29 H 0.03 0.62 7.34 -51.93 -0.38 0.24 16 30 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 32 H 0.12 2.16 7.91 -52.48 -0.42 1.75 16 LS Contribution 273.65 15.07 4.12 4.12 Total: -1.00 -29.50 273.65 -8.20 -37.70 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -5.20 Total: 1.32 kcal Atomic # 6 Polarization: -19.79 SS G_CDS: -3.40 Total: -23.20 kcal Atomic # 7 Polarization: -37.09 SS G_CDS: 1.30 Total: -35.79 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -29.50 -8.20 -37.70 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261277498.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.154 kcal (2) G-P(sol) polarization free energy of solvation -29.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds