Wall clock time and date at job start Mon Mar 30 2020 03:05:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30247 * 126.10718 * 2 1 4 4 N 1.39873 * 110.08484 * 180.02562 * 3 2 1 5 5 H 0.97001 * 125.46213 * 179.97438 * 4 3 2 6 6 C 1.37043 * 109.07942 * 0.02562 * 4 3 2 7 7 C 1.39281 * 133.85595 * 180.02562 * 6 4 3 8 8 C 1.36585 * 119.85488 * 179.74123 * 7 6 4 9 9 C 1.38962 * 120.81553 * 0.51845 * 8 7 6 10 10 C 1.50701 * 119.68670 * 179.75670 * 9 8 7 11 11 H 1.09005 * 109.46995 * 179.72832 * 10 9 8 12 12 C 1.52999 * 109.47433 * 59.72697 * 10 9 8 13 13 C 1.50694 * 109.47169 * 299.72303 * 10 9 8 14 14 H 1.08002 * 120.00179 * 359.97438 * 13 10 9 15 15 C 1.37879 * 120.00472 * 180.02562 * 13 10 9 16 16 N 1.31514 * 119.99350 * 359.97438 * 15 13 10 17 17 Si 1.86798 * 120.00608 * 179.97438 * 15 13 10 18 18 H 1.48493 * 109.47326 * 270.00340 * 17 15 13 19 19 H 1.48506 * 109.46545 * 30.00090 * 17 15 13 20 20 H 1.48498 * 109.47210 * 149.99801 * 17 15 13 21 21 C 1.36462 * 120.62507 * 359.47779 * 9 8 7 22 22 C 1.39943 * 119.63807 * 0.25467 * 21 9 8 23 23 H 1.09002 * 109.47253 * 270.00108 * 1 2 3 24 24 H 1.09007 * 109.47429 * 29.99819 * 1 2 3 25 25 H 1.08996 * 109.47285 * 150.00106 * 1 2 3 26 26 H 1.08004 * 120.06744 * 359.97438 * 7 6 4 27 27 H 1.08002 * 119.59096 * 180.27237 * 8 7 6 28 28 H 1.09001 * 109.47411 * 180.02562 * 12 10 9 29 29 H 1.09002 * 109.46412 * 300.00110 * 12 10 9 30 30 H 1.08993 * 109.47298 * 59.99347 * 12 10 9 31 31 H 0.97005 * 119.99661 * 179.97438 * 16 15 13 32 32 H 1.08008 * 120.18193 * 180.27854 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2745 1.0523 0.0000 4 7 3.6189 0.6662 -0.0006 5 1 4.3778 1.2703 -0.0011 6 6 3.6920 -0.7023 -0.0016 7 6 4.7463 -1.6123 -0.0020 8 6 4.4870 -2.9533 0.0023 9 6 3.1802 -3.4257 -0.0036 10 6 2.9233 -4.9107 -0.0042 11 1 1.8487 -5.0935 -0.0043 12 6 3.5470 -5.5367 1.2448 13 6 3.5376 -5.5262 -1.2349 14 1 4.0613 -4.9043 -1.9458 15 6 3.4303 -6.8833 -1.4539 16 7 2.7921 -7.6405 -0.5885 17 14 4.1911 -7.6463 -2.9798 18 1 3.1979 -7.6409 -4.0837 19 1 5.3844 -6.8600 -3.3838 20 1 4.5960 -9.0442 -2.6849 21 6 2.1272 -2.5577 -0.0032 22 6 2.3669 -1.1789 -0.0021 23 1 -0.3634 0.0000 1.0277 24 1 -0.3634 0.8900 -0.5138 25 1 -0.3633 -0.8899 -0.5138 26 1 5.7667 -1.2583 -0.0019 27 1 5.3079 -3.6552 0.0065 28 1 3.3617 -6.6108 1.2442 29 1 4.6216 -5.3538 1.2448 30 1 3.1028 -5.0914 2.1349 31 1 2.7163 -8.5952 -0.7428 32 1 1.1143 -2.9327 -0.0033 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261277498.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:29 Heat of formation + Delta-G solvation = 49.850425 kcal Electronic energy + Delta-G solvation = -15328.265759 eV Core-core repulsion = 12867.596665 eV Total energy + Delta-G solvation = -2460.669094 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.14159 -38.81747 -35.70021 -34.21802 -32.77279 -31.09793 -29.53028 -28.37168 -27.14297 -23.93892 -23.82650 -21.61431 -20.62532 -18.74903 -18.23748 -17.22542 -16.58028 -16.02896 -15.94993 -15.11177 -14.79723 -14.38392 -14.06645 -13.81577 -13.66241 -13.34502 -13.21287 -13.01141 -12.80451 -12.37495 -12.19808 -12.07813 -12.00770 -11.58688 -11.22603 -11.01098 -10.76316 -10.41939 -9.47654 -8.66228 -8.04296 -6.18235 0.07960 0.71161 1.43992 1.45712 1.53586 1.55002 1.83498 2.46347 2.98644 3.23177 3.61869 3.69092 3.86574 4.26857 4.44507 4.58661 4.72305 4.79528 4.83163 4.86940 4.99724 5.11189 5.19440 5.23127 5.33913 5.53154 5.58551 5.62343 5.74458 6.01477 6.13744 6.18282 6.42306 6.48550 6.70578 6.90849 7.49514 8.99285 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.036751 B = 0.006559 C = 0.006335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.697918 B = 4267.794051 C = 4419.046457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.094 3.906 3 N -0.277 5.277 4 N -0.509 5.509 5 H 0.449 0.551 6 C 0.105 3.895 7 C -0.143 4.143 8 C -0.061 4.061 9 C -0.091 4.091 10 C 0.077 3.923 11 H 0.006 0.994 12 C -0.123 4.123 13 C -0.519 4.519 14 H 0.052 0.948 15 C 0.015 3.985 16 N -0.917 5.917 17 Si 0.950 3.050 18 H -0.279 1.279 19 H -0.269 1.269 20 H -0.283 1.283 21 C -0.065 4.065 22 C -0.192 4.192 23 H 0.096 0.904 24 H 0.091 0.909 25 H 0.088 0.912 26 H 0.151 0.849 27 H 0.128 0.872 28 H 0.058 0.942 29 H 0.034 0.966 30 H 0.023 0.977 31 H 0.261 0.739 32 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.067 12.837 1.683 12.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.084 4.084 3 N -0.093 5.093 4 N -0.227 5.227 5 H 0.295 0.705 6 C -0.010 4.010 7 C -0.165 4.165 8 C -0.082 4.082 9 C -0.092 4.092 10 C 0.058 3.942 11 H 0.025 0.975 12 C -0.180 4.180 13 C -0.557 4.557 14 H 0.070 0.930 15 C -0.183 4.183 16 N -0.556 5.556 17 Si 0.776 3.224 18 H -0.205 1.205 19 H -0.193 1.193 20 H -0.209 1.209 21 C -0.085 4.085 22 C -0.200 4.200 23 H 0.114 0.886 24 H 0.109 0.891 25 H 0.106 0.894 26 H 0.168 0.832 27 H 0.146 0.854 28 H 0.077 0.923 29 H 0.053 0.947 30 H 0.042 0.958 31 H 0.070 0.930 32 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 0.067 13.954 1.715 14.059 hybrid contribution 0.830 -1.370 -0.748 1.768 sum 0.897 12.584 0.967 12.653 Atomic orbital electron populations 1.20378 0.83456 1.04704 1.04593 1.24048 0.98175 0.87948 0.98208 1.76349 0.87992 1.23723 1.21214 1.45694 1.05604 1.03110 1.68247 0.70489 1.18930 0.95839 0.85376 1.00891 1.19988 0.97716 0.91120 1.07665 1.20753 0.96916 0.94640 0.95871 1.19957 0.93283 0.96784 0.99214 1.17683 0.95362 0.86848 0.94293 0.97544 1.21636 0.98457 1.02171 0.95776 1.21408 1.34968 0.92758 1.06558 0.93016 1.25670 0.95813 0.97790 0.99044 1.70010 1.43327 1.05615 1.36690 0.85675 0.78932 0.77678 0.80099 1.20498 1.19307 1.20897 1.20303 0.99315 0.90116 0.98797 1.20003 0.92698 0.94246 1.13028 0.88557 0.89066 0.89371 0.83165 0.85441 0.92318 0.94725 0.95751 0.92993 0.85709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.52 10.48 71.23 0.75 -0.77 16 2 C 0.09 2.80 7.43 44.78 0.33 3.13 16 3 N -0.28 -8.33 12.55 -43.70 -0.55 -8.88 16 4 N -0.51 -14.25 7.37 -51.54 -0.38 -14.63 16 5 H 0.45 9.22 8.96 -213.47 -1.91 7.31 16 6 C 0.10 3.42 7.34 39.21 0.29 3.70 16 7 C -0.14 -4.52 10.03 22.13 0.22 -4.30 16 8 C -0.06 -2.31 8.62 22.06 0.19 -2.12 16 9 C -0.09 -3.85 4.70 -20.11 -0.09 -3.94 16 10 C 0.08 3.80 2.46 -12.29 -0.03 3.76 16 11 H 0.01 0.35 7.84 -2.38 -0.02 0.33 16 12 C -0.12 -5.84 8.78 71.98 0.63 -5.21 16 13 C -0.52 -27.92 8.23 25.60 0.21 -27.71 16 14 H 0.05 2.77 7.60 -2.91 -0.02 2.75 16 15 C 0.02 0.83 5.30 84.66 0.45 1.28 16 16 N -0.92 -51.94 11.32 21.45 0.24 -51.70 16 17 Si 0.95 42.98 29.54 68.60 2.03 45.00 16 18 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 19 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 20 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 21 C -0.06 -2.50 9.67 22.27 0.22 -2.28 16 22 C -0.19 -6.72 6.33 -20.24 -0.13 -6.85 16 23 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 24 H 0.09 1.58 8.14 -2.38 -0.02 1.57 16 25 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.15 3.62 8.06 -2.91 -0.02 3.60 16 27 H 0.13 4.78 7.52 -2.91 -0.02 4.75 16 28 H 0.06 3.10 6.07 -2.39 -0.01 3.08 16 29 H 0.03 1.54 7.34 -2.39 -0.02 1.53 16 30 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.26 14.09 8.31 -92.70 -0.77 13.32 16 32 H 0.12 4.52 7.91 -2.91 -0.02 4.50 16 Total: -1.00 -62.67 273.65 3.59 -59.07 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -0.78 Total: 12.42 kcal Atomic # 6 Polarization: -44.33 SS G_CDS: 3.03 Total: -41.29 kcal Atomic # 7 Polarization: -74.52 SS G_CDS: -0.69 Total: -75.21 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.00 kcal Total: -62.67 3.59 -59.07 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261277498.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.925 kcal (2) G-P(sol) polarization free energy of solvation -62.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds