Wall clock time and date at job start Mon Mar 30 2020 03:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30246 * 126.10453 * 2 1 4 4 N 1.39875 * 110.08519 * 179.97438 * 3 2 1 5 5 H 0.96996 * 125.46233 * 180.02562 * 4 3 2 6 6 C 1.37037 * 109.07251 * 359.97438 * 4 3 2 7 7 C 1.39291 * 133.83832 * 180.02562 * 6 4 3 8 8 C 1.36594 * 119.84767 * 179.97438 * 7 6 4 9 9 C 1.38964 * 120.81220 * 0.02779 * 8 7 6 10 10 C 1.50706 * 119.68003 * 179.97438 * 9 8 7 11 11 H 1.09001 * 109.46949 * 179.97438 * 10 9 8 12 12 C 1.52997 * 109.47238 * 299.99578 * 10 9 8 13 13 C 1.50697 * 109.47178 * 60.00104 * 10 9 8 14 14 H 1.07998 * 120.00039 * 359.97438 * 13 10 9 15 15 C 1.37881 * 120.00021 * 180.02562 * 13 10 9 16 16 N 1.31512 * 119.99798 * 180.02562 * 15 13 10 17 17 Si 1.86794 * 120.00061 * 359.97438 * 15 13 10 18 18 H 1.48500 * 109.46837 * 90.00149 * 17 15 13 19 19 H 1.48493 * 109.47422 * 210.00716 * 17 15 13 20 20 H 1.48506 * 109.46913 * 330.00700 * 17 15 13 21 21 C 1.36464 * 120.63343 * 0.22635 * 9 8 7 22 22 C 1.39947 * 119.63609 * 359.50511 * 21 9 8 23 23 H 1.09004 * 109.46918 * 270.02492 * 1 2 3 24 24 H 1.08998 * 109.47348 * 30.01897 * 1 2 3 25 25 H 1.08996 * 109.47079 * 150.02247 * 1 2 3 26 26 H 1.07994 * 120.07546 * 359.97438 * 7 6 4 27 27 H 1.07999 * 119.58968 * 179.97438 * 8 7 6 28 28 H 1.09001 * 109.46832 * 60.00314 * 12 10 9 29 29 H 1.09002 * 109.47153 * 180.02562 * 12 10 9 30 30 H 1.08996 * 109.46952 * 300.00294 * 12 10 9 31 31 H 0.97002 * 119.99961 * 180.02562 * 16 15 13 32 32 H 1.08000 * 120.18342 * 179.71973 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2745 1.0523 0.0000 4 7 3.6189 0.6663 0.0006 5 1 4.3778 1.2704 0.0011 6 6 3.6919 -0.7021 0.0016 7 6 4.7466 -1.6120 0.0029 8 6 4.4874 -2.9531 0.0041 9 6 3.1806 -3.4256 0.0035 10 6 2.9239 -4.9106 0.0043 11 1 1.8494 -5.0936 0.0042 12 6 3.5485 -5.5368 -1.2440 13 6 3.5375 -5.5257 1.2356 14 1 4.0613 -4.9037 1.9463 15 6 3.4310 -6.8829 1.4544 16 7 3.9661 -7.4196 2.5292 17 14 2.5257 -7.9590 0.2249 18 1 3.4810 -8.4506 -0.8002 19 1 1.9193 -9.1156 0.9316 20 1 1.4571 -7.1659 -0.4343 21 6 2.1275 -2.5577 -0.0030 22 6 2.3670 -1.1789 0.0014 23 1 -0.3633 0.0004 1.0277 24 1 -0.3634 0.8898 -0.5141 25 1 -0.3633 -0.8902 -0.5135 26 1 5.7668 -1.2579 0.0029 27 1 5.3083 -3.6549 0.0047 28 1 4.6231 -5.3538 -1.2434 29 1 3.3625 -6.6109 -1.2437 30 1 3.1047 -5.0919 -2.1346 31 1 3.8915 -8.3745 2.6830 32 1 1.1147 -2.9328 -0.0080 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261277499.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:31 Heat of formation + Delta-G solvation = 74.864923 kcal Electronic energy + Delta-G solvation = -15375.024517 eV Core-core repulsion = 12915.440133 eV Total energy + Delta-G solvation = -2459.584384 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.89522 -37.47154 -34.00220 -32.97565 -31.42312 -29.83091 -28.47947 -27.32023 -25.04179 -22.59278 -22.43011 -20.15968 -19.28466 -17.44085 -16.65575 -15.91493 -14.94790 -14.72897 -14.51330 -13.82332 -13.37483 -12.97441 -12.87786 -12.75563 -12.39754 -12.25325 -12.11932 -11.69404 -11.09483 -10.78015 -10.74130 -10.43716 -10.19727 -9.96072 -9.66502 -9.37392 -9.09131 -8.58218 -8.14948 -7.33259 -6.08712 -4.08474 1.38175 2.07387 2.76212 2.96504 3.26387 3.37013 3.39417 4.33813 4.39531 4.73531 4.86810 5.07239 5.24622 5.60042 5.61261 5.63608 5.76828 5.84187 5.93518 6.06053 6.25683 6.33764 6.46540 6.58539 6.66527 6.77673 6.88412 7.03172 7.12764 7.39507 7.58575 7.63453 7.73498 7.88347 8.50249 8.95787 9.52588 11.04171 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.038994 B = 0.006918 C = 0.006472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.894279 B = 4046.377466 C = 4325.408112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.095 3.905 3 N -0.268 5.268 4 N -0.519 5.519 5 H 0.434 0.566 6 C 0.113 3.887 7 C -0.155 4.155 8 C -0.044 4.044 9 C -0.062 4.062 10 C 0.042 3.958 11 H 0.036 0.964 12 C -0.145 4.145 13 C -0.509 4.509 14 H 0.076 0.924 15 C 0.070 3.930 16 N -0.900 5.900 17 Si 0.888 3.112 18 H -0.279 1.279 19 H -0.298 1.298 20 H -0.266 1.266 21 C -0.059 4.059 22 C -0.174 4.174 23 H 0.080 0.920 24 H 0.073 0.927 25 H 0.081 0.919 26 H 0.118 0.882 27 H 0.133 0.867 28 H 0.053 0.947 29 H 0.040 0.960 30 H 0.030 0.970 31 H 0.264 0.736 32 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.046 11.473 -6.856 13.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.082 4.082 3 N -0.083 5.083 4 N -0.234 5.234 5 H 0.277 0.723 6 C -0.001 4.001 7 C -0.177 4.177 8 C -0.064 4.064 9 C -0.063 4.063 10 C 0.023 3.977 11 H 0.054 0.946 12 C -0.202 4.202 13 C -0.547 4.547 14 H 0.094 0.906 15 C -0.131 4.131 16 N -0.538 5.538 17 Si 0.719 3.281 18 H -0.206 1.206 19 H -0.226 1.226 20 H -0.191 1.191 21 C -0.080 4.080 22 C -0.182 4.182 23 H 0.098 0.902 24 H 0.092 0.908 25 H 0.100 0.900 26 H 0.136 0.864 27 H 0.151 0.849 28 H 0.072 0.928 29 H 0.059 0.941 30 H 0.049 0.951 31 H 0.074 0.926 32 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -2.983 12.587 -6.750 14.591 hybrid contribution 0.216 -1.222 -0.465 1.326 sum -2.767 11.365 -7.216 13.743 Atomic orbital electron populations 1.20197 0.86160 1.03431 1.03277 1.23453 0.96440 0.89096 0.99233 1.76357 0.87647 1.23540 1.20797 1.45669 1.05197 1.03633 1.68914 0.72263 1.18768 0.95868 0.84439 1.01053 1.19778 0.96224 0.92188 1.09514 1.20773 0.97734 0.93647 0.94283 1.19735 0.92010 0.97028 0.97525 1.18293 0.97185 0.87360 0.94837 0.94642 1.22169 1.01096 0.99375 0.97539 1.20975 1.35488 0.93065 1.05170 0.90585 1.25004 0.94970 0.97946 0.95227 1.69892 1.45021 1.12142 1.26702 0.86840 0.80503 0.79921 0.80865 1.20642 1.22584 1.19076 1.20244 0.99323 0.89605 0.98781 1.19717 0.91461 0.94143 1.12830 0.90151 0.90797 0.90039 0.86412 0.84904 0.92771 0.94115 0.95052 0.92621 0.86048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.80 10.48 36.01 0.38 -0.42 16 2 C 0.10 1.47 7.43 -80.19 -0.60 0.88 16 3 N -0.27 -4.24 12.55 34.84 0.44 -3.81 16 4 N -0.52 -7.73 7.37 32.36 0.24 -7.49 16 5 H 0.43 4.95 8.96 -182.77 -1.64 3.31 16 6 C 0.11 1.90 7.34 -84.17 -0.62 1.29 16 7 C -0.15 -2.54 10.03 -39.78 -0.40 -2.94 16 8 C -0.04 -0.82 8.61 -39.91 -0.34 -1.16 16 9 C -0.06 -1.24 4.70 -104.99 -0.49 -1.73 16 10 C 0.04 0.95 2.06 -92.92 -0.19 0.76 16 11 H 0.04 0.81 6.90 -51.93 -0.36 0.45 16 12 C -0.14 -3.01 8.48 37.16 0.32 -2.70 16 13 C -0.51 -13.77 8.81 -34.44 -0.30 -14.08 16 14 H 0.08 2.25 7.84 -52.49 -0.41 1.84 16 15 C 0.07 1.97 5.45 -17.82 -0.10 1.87 16 16 N -0.90 -26.97 13.96 55.43 0.77 -26.20 16 17 Si 0.89 21.39 24.37 -169.99 -4.14 17.25 16 18 H -0.28 -6.56 6.87 56.52 0.39 -6.17 16 19 H -0.30 -7.25 7.11 56.52 0.40 -6.84 16 20 H -0.27 -6.08 6.53 56.52 0.37 -5.71 16 21 C -0.06 -1.09 9.67 -39.58 -0.38 -1.47 16 22 C -0.17 -3.05 6.33 -105.21 -0.67 -3.72 16 23 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 27 H 0.13 2.45 7.53 -52.49 -0.40 2.06 16 28 H 0.05 1.08 7.35 -51.93 -0.38 0.69 16 29 H 0.04 0.89 3.27 -51.93 -0.17 0.72 16 30 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 32 H 0.12 2.01 7.91 -52.49 -0.42 1.60 16 LS Contribution 266.84 15.07 4.02 4.02 Total: -1.00 -31.12 266.84 -7.14 -38.26 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -5.06 Total: 1.39 kcal Atomic # 6 Polarization: -20.03 SS G_CDS: -3.40 Total: -23.42 kcal Atomic # 7 Polarization: -38.94 SS G_CDS: 1.45 Total: -37.49 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.14 Total: 17.25 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -31.12 -7.14 -38.26 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261277499.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.121 kcal (2) G-P(sol) polarization free energy of solvation -31.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds