Wall clock time and date at job start Mon Mar 30 2020 03:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30246 * 126.10453 * 2 1 4 4 N 1.39875 * 110.08519 * 179.97438 * 3 2 1 5 5 H 0.96996 * 125.46233 * 180.02562 * 4 3 2 6 6 C 1.37037 * 109.07251 * 359.97438 * 4 3 2 7 7 C 1.39291 * 133.83832 * 180.02562 * 6 4 3 8 8 C 1.36594 * 119.84767 * 179.97438 * 7 6 4 9 9 C 1.38964 * 120.81220 * 0.02779 * 8 7 6 10 10 C 1.50706 * 119.68003 * 179.97438 * 9 8 7 11 11 H 1.09001 * 109.46949 * 179.97438 * 10 9 8 12 12 C 1.52997 * 109.47238 * 299.99578 * 10 9 8 13 13 C 1.50697 * 109.47178 * 60.00104 * 10 9 8 14 14 H 1.07998 * 120.00039 * 359.97438 * 13 10 9 15 15 C 1.37881 * 120.00021 * 180.02562 * 13 10 9 16 16 N 1.31512 * 119.99798 * 180.02562 * 15 13 10 17 17 Si 1.86794 * 120.00061 * 359.97438 * 15 13 10 18 18 H 1.48500 * 109.46837 * 90.00149 * 17 15 13 19 19 H 1.48493 * 109.47422 * 210.00716 * 17 15 13 20 20 H 1.48506 * 109.46913 * 330.00700 * 17 15 13 21 21 C 1.36464 * 120.63343 * 0.22635 * 9 8 7 22 22 C 1.39947 * 119.63609 * 359.50511 * 21 9 8 23 23 H 1.09004 * 109.46918 * 270.02492 * 1 2 3 24 24 H 1.08998 * 109.47348 * 30.01897 * 1 2 3 25 25 H 1.08996 * 109.47079 * 150.02247 * 1 2 3 26 26 H 1.07994 * 120.07546 * 359.97438 * 7 6 4 27 27 H 1.07999 * 119.58968 * 179.97438 * 8 7 6 28 28 H 1.09001 * 109.46832 * 60.00314 * 12 10 9 29 29 H 1.09002 * 109.47153 * 180.02562 * 12 10 9 30 30 H 1.08996 * 109.46952 * 300.00294 * 12 10 9 31 31 H 0.97002 * 119.99961 * 180.02562 * 16 15 13 32 32 H 1.08000 * 120.18342 * 179.71973 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2745 1.0523 0.0000 4 7 3.6189 0.6663 0.0006 5 1 4.3778 1.2704 0.0011 6 6 3.6919 -0.7021 0.0016 7 6 4.7466 -1.6120 0.0029 8 6 4.4874 -2.9531 0.0041 9 6 3.1806 -3.4256 0.0035 10 6 2.9239 -4.9106 0.0043 11 1 1.8494 -5.0936 0.0042 12 6 3.5485 -5.5368 -1.2440 13 6 3.5375 -5.5257 1.2356 14 1 4.0613 -4.9037 1.9463 15 6 3.4310 -6.8829 1.4544 16 7 3.9661 -7.4196 2.5292 17 14 2.5257 -7.9590 0.2249 18 1 3.4810 -8.4506 -0.8002 19 1 1.9193 -9.1156 0.9316 20 1 1.4571 -7.1659 -0.4343 21 6 2.1275 -2.5577 -0.0030 22 6 2.3670 -1.1789 0.0014 23 1 -0.3633 0.0004 1.0277 24 1 -0.3634 0.8898 -0.5141 25 1 -0.3633 -0.8902 -0.5135 26 1 5.7668 -1.2579 0.0029 27 1 5.3083 -3.6549 0.0047 28 1 4.6231 -5.3538 -1.2434 29 1 3.3625 -6.6109 -1.2437 30 1 3.1047 -5.0919 -2.1346 31 1 3.8915 -8.3745 2.6830 32 1 1.1147 -2.9328 -0.0080 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261277499.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:30 Heat of formation + Delta-G solvation = 54.966055 kcal Electronic energy + Delta-G solvation = -15375.887397 eV Core-core repulsion = 12915.440133 eV Total energy + Delta-G solvation = -2460.447264 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.16524 -38.91851 -35.71785 -34.24052 -33.31234 -31.13024 -29.81760 -28.47373 -27.01592 -24.08739 -23.86436 -21.59979 -20.61041 -18.86403 -18.49543 -17.40784 -16.63375 -16.12474 -15.95388 -15.17872 -14.88963 -14.53774 -14.13428 -14.00787 -13.87171 -13.79764 -13.30366 -13.22678 -12.83117 -12.25275 -12.21043 -12.08441 -11.73402 -11.60670 -11.16958 -11.10577 -10.83491 -10.67704 -9.50243 -8.68472 -8.23794 -6.27449 0.06524 0.67173 1.36389 1.41835 1.52373 1.52808 1.81984 2.37887 2.93024 3.12982 3.59879 3.67186 3.84894 4.13769 4.40285 4.54238 4.55315 4.73294 4.76774 4.83588 4.84884 4.89450 5.06733 5.14755 5.16244 5.25767 5.45170 5.57279 5.60849 5.70762 6.00420 6.04854 6.38373 6.46212 6.69251 6.79439 7.37219 8.92723 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.038994 B = 0.006918 C = 0.006472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.894279 B = 4046.377466 C = 4325.408112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.096 3.904 3 N -0.278 5.278 4 N -0.510 5.510 5 H 0.448 0.552 6 C 0.107 3.893 7 C -0.146 4.146 8 C -0.061 4.061 9 C -0.089 4.089 10 C 0.044 3.956 11 H 0.036 0.964 12 C -0.142 4.142 13 C -0.506 4.506 14 H 0.033 0.967 15 C 0.011 3.989 16 N -0.952 5.952 17 Si 0.950 3.050 18 H -0.268 1.268 19 H -0.303 1.303 20 H -0.243 1.243 21 C -0.058 4.058 22 C -0.193 4.193 23 H 0.092 0.908 24 H 0.091 0.909 25 H 0.093 0.907 26 H 0.148 0.852 27 H 0.125 0.875 28 H 0.054 0.946 29 H 0.032 0.968 30 H 0.060 0.940 31 H 0.264 0.736 32 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.245 12.754 -8.617 15.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.082 4.082 3 N -0.094 5.094 4 N -0.227 5.227 5 H 0.295 0.705 6 C -0.008 4.008 7 C -0.167 4.167 8 C -0.081 4.081 9 C -0.091 4.091 10 C 0.025 3.975 11 H 0.054 0.946 12 C -0.199 4.199 13 C -0.544 4.544 14 H 0.052 0.948 15 C -0.186 4.186 16 N -0.592 5.592 17 Si 0.777 3.223 18 H -0.194 1.194 19 H -0.231 1.231 20 H -0.166 1.166 21 C -0.078 4.078 22 C -0.201 4.201 23 H 0.111 0.889 24 H 0.110 0.890 25 H 0.112 0.888 26 H 0.165 0.835 27 H 0.143 0.857 28 H 0.073 0.927 29 H 0.050 0.950 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -4.173 13.917 -8.531 16.849 hybrid contribution 0.626 -1.450 0.146 1.586 sum -3.547 12.467 -8.385 15.438 Atomic orbital electron populations 1.20397 0.83279 1.04968 1.04513 1.24076 0.98225 0.87866 0.97986 1.76365 0.87938 1.23841 1.21253 1.45722 1.05668 1.03146 1.68170 0.70537 1.18947 0.95934 0.85380 1.00575 1.19967 0.97728 0.91209 1.07839 1.20757 0.97097 0.94654 0.95608 1.19604 0.93267 0.95873 1.00335 1.18182 0.96651 0.89152 0.93480 0.94609 1.22092 1.01367 0.98706 0.97750 1.21234 1.34364 0.92767 1.06013 0.94832 1.25862 0.96049 0.99558 0.97084 1.70051 1.47452 1.12519 1.29209 0.85838 0.79974 0.77894 0.78623 1.19379 1.23127 1.16631 1.20343 0.99524 0.89939 0.97980 1.20010 0.92520 0.94423 1.13158 0.88926 0.89019 0.88783 0.83456 0.85734 0.92679 0.94962 0.92071 0.92676 0.84625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.39 10.48 71.24 0.75 -0.65 16 2 C 0.10 2.73 7.43 44.78 0.33 3.06 16 3 N -0.28 -8.14 12.55 -43.70 -0.55 -8.68 16 4 N -0.51 -14.02 7.37 -51.53 -0.38 -14.40 16 5 H 0.45 9.14 8.96 -213.47 -1.91 7.23 16 6 C 0.11 3.41 7.34 39.21 0.29 3.70 16 7 C -0.15 -4.57 10.03 22.14 0.22 -4.35 16 8 C -0.06 -2.24 8.61 22.06 0.19 -2.05 16 9 C -0.09 -3.55 4.70 -20.10 -0.09 -3.64 16 10 C 0.04 1.97 2.06 -12.29 -0.03 1.94 16 11 H 0.04 1.58 6.90 -2.39 -0.02 1.57 16 12 C -0.14 -5.66 8.48 71.98 0.61 -5.05 16 13 C -0.51 -28.01 8.81 25.60 0.23 -27.79 16 14 H 0.03 2.08 7.84 -2.91 -0.02 2.06 16 15 C 0.01 0.63 5.45 84.66 0.46 1.09 16 16 N -0.95 -58.93 13.96 21.45 0.30 -58.64 16 17 Si 0.95 43.85 24.37 68.60 1.67 45.52 16 18 H -0.27 -11.77 6.87 99.48 0.68 -11.09 16 19 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 20 H -0.24 -10.20 6.53 99.48 0.65 -9.55 16 21 C -0.06 -2.04 9.67 22.27 0.22 -1.82 16 22 C -0.19 -6.43 6.33 -20.24 -0.13 -6.55 16 23 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 24 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.15 3.63 8.06 -2.91 -0.02 3.60 16 27 H 0.12 4.69 7.53 -2.91 -0.02 4.67 16 28 H 0.05 2.14 7.35 -2.39 -0.02 2.12 16 29 H 0.03 1.32 3.27 -2.39 -0.01 1.32 16 30 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 32 H 0.14 4.24 7.91 -2.91 -0.02 4.22 16 Total: -1.00 -67.68 266.84 3.23 -64.45 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -0.86 Total: 13.88 kcal Atomic # 6 Polarization: -45.17 SS G_CDS: 3.04 Total: -42.12 kcal Atomic # 7 Polarization: -81.09 SS G_CDS: -0.63 Total: -81.72 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 1.67 Total: 45.52 kcal Total: -67.68 3.23 -64.45 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261277499.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.414 kcal (2) G-P(sol) polarization free energy of solvation -67.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds