Wall clock time and date at job start Mon Mar 30 2020 03:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38514 * 119.23062 * 2 1 4 4 C 1.38449 * 119.28484 * 180.02562 * 3 2 1 5 5 C 1.50706 * 120.96490 * 179.72498 * 4 3 2 6 6 C 1.39256 * 118.07401 * 0.02562 * 4 3 2 7 7 C 1.47559 * 134.09816 * 180.02562 * 6 4 3 8 8 C 1.40888 * 126.98995 * 359.95209 * 7 6 4 9 9 H 1.08001 * 119.99523 * 18.17127 * 8 7 6 10 10 C 1.39761 * 120.00240 * 198.17146 * 8 7 6 11 11 N 1.31039 * 119.99983 * 359.97438 * 10 8 7 12 12 Si 1.86804 * 120.00092 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.46844 * 89.99902 * 12 10 8 14 14 H 1.48498 * 109.47003 * 209.99906 * 12 10 8 15 15 H 1.48496 * 109.46852 * 330.00221 * 12 10 8 16 16 C 1.38897 * 106.02170 * 179.97438 * 7 6 4 17 17 N 1.35761 * 109.26161 * 0.02562 * 16 7 6 18 18 C 1.46495 * 124.62930 * 179.97438 * 17 16 7 19 19 C 1.37881 * 110.74499 * 359.97438 * 17 16 7 20 20 N 1.31644 * 119.23737 * 180.02562 * 2 1 3 21 21 H 1.08990 * 109.47342 * 90.00074 * 1 2 3 22 22 H 1.09006 * 109.46709 * 210.00303 * 1 2 3 23 23 H 1.08998 * 109.47344 * 329.99657 * 1 2 3 24 24 H 1.08005 * 120.35865 * 0.02562 * 3 2 1 25 25 H 1.08996 * 109.46566 * 95.57564 * 5 4 3 26 26 H 1.08999 * 109.47027 * 215.57596 * 5 4 3 27 27 H 1.09004 * 109.46790 * 335.57423 * 5 4 3 28 28 H 0.96998 * 119.99469 * 180.02562 * 11 10 8 29 29 H 1.08005 * 125.36464 * 179.97438 * 16 7 6 30 30 H 1.09001 * 109.47153 * 270.02554 * 18 17 16 31 31 H 1.09008 * 109.46779 * 30.02428 * 18 17 16 32 32 H 1.08996 * 109.47409 * 150.02452 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1834 1.2088 0.0000 4 6 3.5679 1.2101 -0.0005 5 6 4.3421 2.5031 -0.0068 6 6 4.2244 -0.0180 -0.0016 7 6 5.6430 -0.4240 -0.0020 8 6 6.7676 0.4247 -0.0022 9 1 6.6633 1.4593 0.2896 10 6 8.0181 -0.0723 -0.3799 11 7 8.1447 -1.3277 -0.7335 12 14 9.5093 1.0529 -0.3795 13 1 10.1675 1.0018 0.9507 14 1 10.4667 0.6061 -1.4230 15 1 9.0790 2.4450 -0.6657 16 6 5.6443 -1.8130 -0.0026 17 7 4.3631 -2.2620 -0.0032 18 6 3.9761 -3.6749 -0.0045 19 6 3.4757 -1.2067 -0.0024 20 7 2.1500 -1.1487 -0.0005 21 1 -0.3633 0.0000 -1.0276 22 1 -0.3633 -0.8900 0.5139 23 1 -0.3634 0.8899 0.5139 24 1 1.6367 2.1402 0.0004 25 1 4.6147 2.7681 1.0147 26 1 5.2456 2.3827 -0.6044 27 1 3.7257 3.2935 -0.4351 28 1 9.0126 -1.6726 -0.9953 29 1 6.5256 -2.4373 -0.0034 30 1 3.8808 -4.0246 -1.0325 31 1 4.7383 -4.2608 0.5094 32 1 3.0215 -3.7907 0.5086 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261279214.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:33 Heat of formation + Delta-G solvation = 52.632382 kcal Electronic energy + Delta-G solvation = -15675.181997 eV Core-core repulsion = 13214.633538 eV Total energy + Delta-G solvation = -2460.548460 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.12930 -37.05194 -34.07566 -32.88935 -30.94034 -30.08278 -27.30185 -26.41799 -25.42495 -24.03549 -20.89362 -20.28808 -18.92971 -16.96740 -15.62893 -15.45338 -14.66663 -14.52490 -14.09286 -13.36806 -13.33556 -12.72401 -12.61951 -12.43888 -12.00172 -11.74750 -11.69862 -11.46571 -11.29009 -11.22278 -11.05264 -10.94063 -10.28269 -10.08836 -9.68346 -9.24575 -8.67369 -8.34302 -7.14112 -6.64203 -6.53174 -4.04289 2.17204 2.41024 3.07405 3.15833 3.19266 3.86981 4.07697 4.17375 4.79450 5.19506 5.46543 5.50005 5.63531 5.87314 5.93262 5.97797 6.02817 6.05843 6.09649 6.16430 6.35308 6.38893 6.48787 6.66407 6.73944 7.02700 7.22444 7.33985 7.47350 7.66386 7.93602 8.31678 8.41663 8.82099 9.05512 9.07858 9.22328 10.47459 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.029942 B = 0.009189 C = 0.007109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.901861 B = 3046.342634 C = 3937.493475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.138 3.862 3 C -0.244 4.244 4 C 0.012 3.988 5 C -0.112 4.112 6 C -0.170 4.170 7 C 0.033 3.967 8 C -0.424 4.424 9 H 0.077 0.923 10 C 0.059 3.941 11 N -0.831 5.831 12 Si 0.913 3.087 13 H -0.273 1.273 14 H -0.281 1.281 15 H -0.266 1.266 16 C -0.079 4.079 17 N -0.463 5.463 18 C 0.093 3.907 19 C 0.269 3.731 20 N -0.521 5.521 21 H 0.065 0.935 22 H 0.065 0.935 23 H 0.065 0.935 24 H 0.115 0.885 25 H 0.066 0.934 26 H 0.083 0.917 27 H 0.053 0.947 28 H 0.273 0.727 29 H 0.183 0.817 30 H 0.052 0.948 31 H 0.070 0.930 32 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.069 1.556 0.963 6.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.009 4.009 3 C -0.268 4.268 4 C 0.004 3.996 5 C -0.168 4.168 6 C -0.179 4.179 7 C 0.027 3.973 8 C -0.457 4.457 9 H 0.095 0.905 10 C -0.152 4.152 11 N -0.462 5.462 12 Si 0.739 3.261 13 H -0.199 1.199 14 H -0.206 1.206 15 H -0.190 1.190 16 C -0.201 4.201 17 N -0.150 5.150 18 C -0.050 4.050 19 C 0.035 3.965 20 N -0.237 5.237 21 H 0.084 0.916 22 H 0.084 0.916 23 H 0.084 0.916 24 H 0.133 0.867 25 H 0.085 0.915 26 H 0.102 0.898 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.200 0.800 30 H 0.070 0.930 31 H 0.089 0.911 32 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.250 0.238 0.882 6.316 hybrid contribution 1.202 1.018 -0.135 1.581 sum -5.048 1.256 0.747 5.255 Atomic orbital electron populations 1.20522 0.90245 1.02078 1.01812 1.20424 0.95134 0.87515 0.97787 1.21139 0.93752 0.97814 1.14060 1.19544 0.92692 0.94020 0.93361 1.20813 1.00486 0.93247 1.02268 1.19988 0.96289 0.91799 1.09820 1.17938 0.88294 0.91103 0.99921 1.18786 0.90843 0.96999 1.39089 0.90487 1.25680 1.00023 0.95467 0.94003 1.69624 1.25122 1.14332 1.37073 0.86223 0.80720 0.80818 0.78353 1.19872 1.20617 1.18984 1.22832 0.82958 0.95528 1.18774 1.43266 1.05159 1.03246 1.63332 1.21614 1.00908 0.81094 1.01409 1.18286 0.87500 0.87372 1.03320 1.66046 1.07629 1.29995 1.20032 0.91645 0.91635 0.91604 0.86678 0.91545 0.89791 0.92845 0.91586 0.79998 0.92989 0.91127 0.91280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.30 10.15 36.01 0.37 -0.94 16 2 C 0.14 2.76 6.77 -82.57 -0.56 2.20 16 3 C -0.24 -4.81 9.41 -39.40 -0.37 -5.18 16 4 C 0.01 0.25 5.93 -104.16 -0.62 -0.36 16 5 C -0.11 -2.10 9.23 36.01 0.33 -1.77 16 6 C -0.17 -4.32 6.18 -104.88 -0.65 -4.97 16 7 C 0.03 0.89 6.02 -104.85 -0.63 0.26 16 8 C -0.42 -11.23 8.54 -38.01 -0.32 -11.55 16 9 H 0.08 1.93 6.00 -52.49 -0.32 1.62 16 10 C 0.06 1.50 5.48 -17.32 -0.09 1.41 16 11 N -0.83 -21.58 10.67 55.54 0.59 -20.99 16 12 Si 0.91 19.20 29.56 -169.99 -5.02 14.17 16 13 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 14 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 15 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 16 C -0.08 -2.04 10.23 -15.57 -0.16 -2.20 16 17 N -0.46 -11.03 3.14 -122.58 -0.39 -11.41 16 18 C 0.09 1.71 11.04 59.84 0.66 2.37 16 19 C 0.27 6.68 7.85 -155.34 -1.22 5.46 16 20 N -0.52 -11.89 10.29 -8.49 -0.09 -11.98 16 21 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 22 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 23 H 0.07 0.80 8.07 -51.93 -0.42 0.39 16 24 H 0.12 1.87 8.06 -52.48 -0.42 1.45 16 25 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 26 H 0.08 1.71 6.25 -51.93 -0.32 1.38 16 27 H 0.05 0.84 8.07 -51.93 -0.42 0.42 16 28 H 0.27 6.56 8.30 -40.82 -0.34 6.22 16 29 H 0.18 4.80 6.18 -52.48 -0.32 4.47 16 30 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.07 1.15 8.13 -51.92 -0.42 0.72 16 32 H 0.07 1.19 8.13 -51.93 -0.42 0.77 16 LS Contribution 271.58 15.07 4.09 4.09 Total: -1.00 -29.59 271.58 -7.97 -37.57 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -3.89 Total: 3.83 kcal Atomic # 6 Polarization: -12.01 SS G_CDS: -3.27 Total: -15.28 kcal Atomic # 7 Polarization: -44.50 SS G_CDS: 0.12 Total: -44.38 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -5.02 Total: 14.17 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -29.59 -7.97 -37.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261279214.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.199 kcal (2) G-P(sol) polarization free energy of solvation -29.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds