Wall clock time and date at job start Mon Mar 30 2020 03:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38514 * 119.23062 * 2 1 4 4 C 1.38449 * 119.28484 * 180.02562 * 3 2 1 5 5 C 1.50706 * 120.96490 * 179.72498 * 4 3 2 6 6 C 1.39256 * 118.07401 * 0.02562 * 4 3 2 7 7 C 1.47559 * 134.09816 * 180.02562 * 6 4 3 8 8 C 1.40888 * 126.98995 * 359.95209 * 7 6 4 9 9 H 1.08001 * 119.99523 * 18.17127 * 8 7 6 10 10 C 1.39761 * 120.00240 * 198.17146 * 8 7 6 11 11 N 1.31039 * 119.99983 * 359.97438 * 10 8 7 12 12 Si 1.86804 * 120.00092 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.46844 * 89.99902 * 12 10 8 14 14 H 1.48498 * 109.47003 * 209.99906 * 12 10 8 15 15 H 1.48496 * 109.46852 * 330.00221 * 12 10 8 16 16 C 1.38897 * 106.02170 * 179.97438 * 7 6 4 17 17 N 1.35761 * 109.26161 * 0.02562 * 16 7 6 18 18 C 1.46495 * 124.62930 * 179.97438 * 17 16 7 19 19 C 1.37881 * 110.74499 * 359.97438 * 17 16 7 20 20 N 1.31644 * 119.23737 * 180.02562 * 2 1 3 21 21 H 1.08990 * 109.47342 * 90.00074 * 1 2 3 22 22 H 1.09006 * 109.46709 * 210.00303 * 1 2 3 23 23 H 1.08998 * 109.47344 * 329.99657 * 1 2 3 24 24 H 1.08005 * 120.35865 * 0.02562 * 3 2 1 25 25 H 1.08996 * 109.46566 * 95.57564 * 5 4 3 26 26 H 1.08999 * 109.47027 * 215.57596 * 5 4 3 27 27 H 1.09004 * 109.46790 * 335.57423 * 5 4 3 28 28 H 0.96998 * 119.99469 * 180.02562 * 11 10 8 29 29 H 1.08005 * 125.36464 * 179.97438 * 16 7 6 30 30 H 1.09001 * 109.47153 * 270.02554 * 18 17 16 31 31 H 1.09008 * 109.46779 * 30.02428 * 18 17 16 32 32 H 1.08996 * 109.47409 * 150.02452 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1834 1.2088 0.0000 4 6 3.5679 1.2101 -0.0005 5 6 4.3421 2.5031 -0.0068 6 6 4.2244 -0.0180 -0.0016 7 6 5.6430 -0.4240 -0.0020 8 6 6.7676 0.4247 -0.0022 9 1 6.6633 1.4593 0.2896 10 6 8.0181 -0.0723 -0.3799 11 7 8.1447 -1.3277 -0.7335 12 14 9.5093 1.0529 -0.3795 13 1 10.1675 1.0018 0.9507 14 1 10.4667 0.6061 -1.4230 15 1 9.0790 2.4450 -0.6657 16 6 5.6443 -1.8130 -0.0026 17 7 4.3631 -2.2620 -0.0032 18 6 3.9761 -3.6749 -0.0045 19 6 3.4757 -1.2067 -0.0024 20 7 2.1500 -1.1487 -0.0005 21 1 -0.3633 0.0000 -1.0276 22 1 -0.3633 -0.8900 0.5139 23 1 -0.3634 0.8899 0.5139 24 1 1.6367 2.1402 0.0004 25 1 4.6147 2.7681 1.0147 26 1 5.2456 2.3827 -0.6044 27 1 3.7257 3.2935 -0.4351 28 1 9.0126 -1.6726 -0.9953 29 1 6.5256 -2.4373 -0.0034 30 1 3.8808 -4.0246 -1.0325 31 1 4.7383 -4.2608 0.5094 32 1 3.0215 -3.7907 0.5086 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261279214.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:32 Heat of formation + Delta-G solvation = 36.706112 kcal Electronic energy + Delta-G solvation = -15675.872612 eV Core-core repulsion = 13214.633538 eV Total energy + Delta-G solvation = -2461.239075 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.85681 -38.72449 -35.87254 -34.60974 -32.54161 -31.69628 -29.06247 -27.91748 -27.03899 -25.82319 -22.61818 -21.92079 -20.73122 -18.76624 -17.44107 -17.18670 -16.36662 -16.20210 -15.70627 -14.95411 -14.78529 -14.43028 -14.09920 -13.97927 -13.34096 -13.25962 -13.20166 -13.07026 -12.93166 -12.85919 -12.69830 -12.58944 -11.93819 -11.80519 -11.47129 -11.05900 -10.40901 -10.04002 -8.86466 -8.52294 -8.41610 -6.00754 0.46149 0.74860 1.40809 1.43639 1.55900 2.17629 2.27976 2.33708 3.08682 3.54638 3.69564 4.02985 4.14289 4.42965 4.44355 4.47892 4.59204 4.64699 4.77984 4.87862 4.93852 4.97926 5.00854 5.08122 5.14572 5.31885 5.46510 5.63953 5.69274 5.92401 6.13911 6.49696 6.58405 6.94871 7.13168 7.18118 7.48155 8.60082 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.029942 B = 0.009189 C = 0.007109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.901861 B = 3046.342634 C = 3937.493475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.137 3.863 3 C -0.238 4.238 4 C -0.003 4.003 5 C -0.106 4.106 6 C -0.214 4.214 7 C 0.002 3.998 8 C -0.453 4.453 9 H 0.080 0.920 10 C 0.015 3.985 11 N -0.860 5.860 12 Si 0.984 3.016 13 H -0.267 1.267 14 H -0.276 1.276 15 H -0.259 1.259 16 C -0.099 4.099 17 N -0.472 5.472 18 C 0.090 3.910 19 C 0.248 3.752 20 N -0.537 5.537 21 H 0.084 0.916 22 H 0.068 0.932 23 H 0.098 0.902 24 H 0.159 0.841 25 H 0.074 0.926 26 H 0.061 0.939 27 H 0.090 0.910 28 H 0.278 0.722 29 H 0.171 0.829 30 H 0.062 0.938 31 H 0.087 0.913 32 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.638 3.205 1.008 8.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.010 4.010 3 C -0.260 4.260 4 C -0.011 4.011 5 C -0.162 4.162 6 C -0.223 4.223 7 C -0.004 4.004 8 C -0.485 4.485 9 H 0.099 0.901 10 C -0.193 4.193 11 N -0.490 5.490 12 Si 0.806 3.194 13 H -0.192 1.192 14 H -0.201 1.201 15 H -0.183 1.183 16 C -0.221 4.221 17 N -0.160 5.160 18 C -0.052 4.052 19 C 0.015 3.985 20 N -0.255 5.255 21 H 0.102 0.898 22 H 0.087 0.913 23 H 0.117 0.883 24 H 0.177 0.823 25 H 0.092 0.908 26 H 0.080 0.920 27 H 0.109 0.891 28 H 0.089 0.911 29 H 0.188 0.812 30 H 0.080 0.920 31 H 0.106 0.894 32 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.841 1.866 0.930 8.113 hybrid contribution 1.489 0.526 -0.146 1.586 sum -6.351 2.392 0.783 6.832 Atomic orbital electron populations 1.20666 0.86054 1.03934 1.03544 1.21502 0.97811 0.86974 0.94705 1.21641 0.92863 0.99627 1.11914 1.20063 0.94201 0.94111 0.92679 1.20800 0.99901 0.92898 1.02624 1.20331 0.95853 0.93754 1.12370 1.18366 0.89672 0.91901 1.00482 1.19074 0.91723 0.97345 1.40404 0.90148 1.26566 1.02601 0.96936 0.93189 1.69722 1.25994 1.15824 1.37503 0.85151 0.76813 0.78915 0.78513 1.19224 1.20059 1.18256 1.22644 0.83744 0.95531 1.20220 1.43428 1.04382 1.04905 1.63247 1.21834 1.01939 0.78919 1.02477 1.18644 0.88480 0.87635 1.03691 1.66226 1.06470 1.31522 1.21276 0.89759 0.91289 0.88309 0.82331 0.90779 0.92019 0.89143 0.91145 0.81190 0.91990 0.89430 0.90197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.12 10.15 71.24 0.72 -1.39 16 2 C 0.14 5.11 6.77 42.65 0.29 5.40 16 3 C -0.24 -8.64 9.41 22.39 0.21 -8.43 16 4 C 0.00 -0.12 5.93 -19.57 -0.12 -0.23 16 5 C -0.11 -3.84 9.23 71.24 0.66 -3.19 16 6 C -0.21 -11.15 6.18 -20.03 -0.12 -11.27 16 7 C 0.00 0.09 6.02 -20.01 -0.12 -0.03 16 8 C -0.45 -24.83 8.54 23.29 0.20 -24.63 16 9 H 0.08 4.16 6.00 -2.91 -0.02 4.15 16 10 C 0.02 0.78 5.48 85.18 0.47 1.25 16 11 N -0.86 -46.19 10.67 21.80 0.23 -45.96 16 12 Si 0.98 39.80 29.56 68.60 2.03 41.83 16 13 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 14 H -0.28 -10.80 7.11 99.48 0.71 -10.10 16 15 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 16 C -0.10 -5.39 10.23 84.24 0.86 -4.53 16 17 N -0.47 -23.22 3.14 -541.73 -1.70 -24.92 16 18 C 0.09 3.35 11.04 127.77 1.41 4.76 16 19 C 0.25 12.54 7.85 133.68 1.05 13.58 16 20 N -0.54 -24.10 10.29 -180.77 -1.86 -25.96 16 21 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 22 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 23 H 0.10 1.85 8.07 -2.39 -0.02 1.84 16 24 H 0.16 4.30 8.06 -2.91 -0.02 4.28 16 25 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 26 H 0.06 2.51 6.25 -2.39 -0.01 2.50 16 27 H 0.09 2.54 8.07 -2.38 -0.02 2.52 16 28 H 0.28 13.72 8.30 -92.71 -0.77 12.95 16 29 H 0.17 9.53 6.18 -2.91 -0.02 9.51 16 30 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.09 2.89 8.13 -2.38 -0.02 2.87 16 32 H 0.08 2.76 8.13 -2.39 -0.02 2.74 16 Total: -1.00 -66.72 271.58 5.33 -61.39 By element: Atomic # 1 Polarization: 21.19 SS G_CDS: 1.12 Total: 22.31 kcal Atomic # 6 Polarization: -34.20 SS G_CDS: 5.51 Total: -28.70 kcal Atomic # 7 Polarization: -93.50 SS G_CDS: -3.33 Total: -96.83 kcal Atomic # 14 Polarization: 39.80 SS G_CDS: 2.03 Total: 41.83 kcal Total: -66.72 5.33 -61.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261279214.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.095 kcal (2) G-P(sol) polarization free energy of solvation -66.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds