Wall clock time and date at job start Mon Mar 30 2020 03:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30241 * 126.10659 * 2 1 4 4 N 1.39880 * 110.08241 * 179.44190 * 3 2 1 5 5 H 0.97002 * 125.46046 * 179.97438 * 4 3 2 6 6 C 1.37038 * 109.07519 * 0.66240 * 4 3 2 7 7 C 1.39286 * 133.84614 * 179.28253 * 6 4 3 8 8 C 1.36584 * 119.85489 * 180.02562 * 7 6 4 9 9 C 1.38965 * 120.81297 * 359.97438 * 8 7 6 10 10 C 1.36468 * 120.62705 * 0.02562 * 9 8 7 11 11 C 1.50703 * 120.17695 * 180.02562 * 10 9 8 12 12 H 1.09001 * 109.47032 * 173.75155 * 11 10 9 13 13 C 1.53001 * 109.47215 * 53.75439 * 11 10 9 14 14 C 1.50692 * 109.47032 * 293.74982 * 11 10 9 15 15 H 1.07999 * 120.00357 * 359.72968 * 14 11 10 16 16 C 1.37887 * 119.99930 * 180.02562 * 14 11 10 17 17 N 1.31513 * 119.99839 * 0.02562 * 16 14 11 18 18 Si 1.86797 * 119.99854 * 180.02562 * 16 14 11 19 19 H 1.48502 * 109.47458 * 0.02562 * 18 16 14 20 20 H 1.48507 * 109.47004 * 120.00264 * 18 16 14 21 21 H 1.48499 * 109.47345 * 239.99677 * 18 16 14 22 22 C 1.39937 * 119.63848 * 0.29431 * 10 9 8 23 23 H 1.09011 * 109.47070 * 263.69118 * 1 2 3 24 24 H 1.08995 * 109.47109 * 23.69747 * 1 2 3 25 25 H 1.09006 * 109.47114 * 143.69992 * 1 2 3 26 26 H 1.08010 * 120.07150 * 0.04603 * 7 6 4 27 27 H 1.08000 * 119.59485 * 180.02562 * 8 7 6 28 28 H 1.07996 * 119.68854 * 180.02562 * 9 8 7 29 29 H 1.09001 * 109.46889 * 299.99804 * 13 11 10 30 30 H 1.09003 * 109.47336 * 60.00154 * 13 11 10 31 31 H 1.09003 * 109.47230 * 180.02562 * 13 11 10 32 32 H 0.96999 * 119.99460 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2745 1.0522 0.0000 4 7 3.6189 0.6662 0.0128 5 1 4.3778 1.2702 0.0149 6 6 3.6919 -0.7023 0.0063 7 6 4.7465 -1.6122 0.0004 8 6 4.4873 -2.9532 -0.0060 9 6 3.1805 -3.4257 -0.0064 10 6 2.1274 -2.5578 -0.0008 11 6 0.7142 -3.0813 -0.0006 12 1 0.0189 -2.2500 0.1161 13 6 0.5342 -4.0633 1.1588 14 6 0.4398 -3.7867 -1.3037 15 1 1.2100 -3.8458 -2.0584 16 6 -0.7968 -4.3513 -1.5348 17 7 -1.7368 -4.2738 -0.6183 18 14 -1.1368 -5.2263 -3.1498 19 1 0.0760 -5.1753 -4.0053 20 1 -1.4926 -6.6426 -2.8801 21 1 -2.2639 -4.5572 -3.8476 22 6 2.3669 -1.1790 -0.0009 23 1 -0.3634 -0.1129 1.0215 24 1 -0.3633 0.9410 -0.4130 25 1 -0.3634 -0.8283 -0.6084 26 1 5.7669 -1.2581 0.0014 27 1 5.3082 -3.6550 -0.0101 28 1 2.9965 -4.4899 -0.0111 29 1 1.2296 -4.8945 1.0421 30 1 0.7327 -3.5530 2.1013 31 1 -0.4878 -4.4423 1.1586 32 1 -2.6065 -4.6713 -0.7808 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261285966.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:32 Heat of formation + Delta-G solvation = 70.910603 kcal Electronic energy + Delta-G solvation = -15793.756661 eV Core-core repulsion = 13334.000804 eV Total energy + Delta-G solvation = -2459.755857 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.74000 -37.00073 -34.55690 -32.51727 -30.89040 -29.16040 -28.36574 -26.88637 -25.13235 -22.80490 -21.77779 -20.14270 -19.18745 -16.81101 -16.40696 -15.91727 -14.70543 -14.51403 -14.41259 -13.95973 -13.18354 -12.80859 -12.45802 -12.23221 -12.07122 -11.52499 -11.37953 -11.28311 -11.04455 -10.87796 -10.64489 -10.31314 -10.27068 -9.86921 -9.41888 -9.32926 -8.81666 -8.34786 -8.01552 -7.21256 -6.02295 -4.08319 1.57649 2.18657 2.99270 3.16622 3.28641 3.37363 3.42134 4.37659 4.53608 5.04632 5.18483 5.25637 5.29215 5.62780 5.81149 6.05263 6.11406 6.16426 6.24403 6.37125 6.56908 6.68831 6.86543 6.97126 6.99524 7.17650 7.20064 7.34180 7.60080 7.72980 7.79162 7.97781 8.07665 8.13394 8.37720 8.94160 9.55862 11.02993 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.028015 B = 0.009041 C = 0.007995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.209963 B = 3096.405551 C = 3501.280554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.123 3.877 3 N -0.279 5.279 4 N -0.525 5.525 5 H 0.431 0.569 6 C 0.127 3.873 7 C -0.182 4.182 8 C -0.062 4.062 9 C -0.170 4.170 10 C 0.052 3.948 11 C 0.056 3.944 12 H 0.053 0.947 13 C -0.133 4.133 14 C -0.503 4.503 15 H 0.057 0.943 16 C 0.063 3.937 17 N -0.888 5.888 18 Si 0.890 3.110 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.180 4.180 23 H 0.080 0.920 24 H 0.068 0.932 25 H 0.107 0.893 26 H 0.112 0.888 27 H 0.118 0.882 28 H 0.126 0.874 29 H 0.029 0.971 30 H 0.008 0.992 31 H 0.086 0.914 32 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.734 4.620 2.064 9.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.055 4.055 3 N -0.094 5.094 4 N -0.239 5.239 5 H 0.274 0.726 6 C 0.012 3.988 7 C -0.204 4.204 8 C -0.083 4.083 9 C -0.189 4.189 10 C 0.050 3.950 11 C 0.038 3.962 12 H 0.071 0.929 13 C -0.190 4.190 14 C -0.541 4.541 15 H 0.075 0.925 16 C -0.138 4.138 17 N -0.527 5.527 18 Si 0.718 3.282 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.188 4.188 23 H 0.099 0.901 24 H 0.087 0.913 25 H 0.125 0.875 26 H 0.131 0.869 27 H 0.136 0.864 28 H 0.144 0.856 29 H 0.048 0.952 30 H 0.027 0.973 31 H 0.105 0.895 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.578 5.858 2.094 9.805 hybrid contribution 0.440 -1.008 -0.921 1.434 sum 8.018 4.850 1.173 9.444 Atomic orbital electron populations 1.20522 0.85688 1.04088 1.03911 1.23582 0.96755 0.88755 0.96409 1.76422 0.87307 1.23450 1.22236 1.45696 1.05452 1.03408 1.69338 0.72565 1.18835 0.95936 0.84633 0.99406 1.19514 0.95859 0.92170 1.12886 1.20681 0.97083 0.94124 0.96405 1.20579 0.91251 1.00387 1.06713 1.20017 0.98738 0.89275 0.86979 1.18206 0.86572 0.96015 0.95432 0.92941 1.21804 1.03755 0.98480 0.94994 1.21093 0.97987 1.34991 1.00063 0.92456 1.24922 0.96099 0.96157 0.96617 1.69885 1.04145 1.45370 1.33324 0.86553 0.78276 0.79381 0.83944 1.19788 1.21046 1.21029 1.19771 0.91018 0.94331 1.13667 0.90148 0.91346 0.87466 0.86949 0.86380 0.85634 0.95159 0.97273 0.89500 0.92979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.47 9.18 36.00 0.33 -1.14 16 2 C 0.12 2.41 7.43 -80.19 -0.60 1.82 16 3 N -0.28 -5.22 12.55 34.84 0.44 -4.78 16 4 N -0.52 -8.76 7.37 32.36 0.24 -8.52 16 5 H 0.43 5.50 8.96 -182.76 -1.64 3.86 16 6 C 0.13 2.33 7.34 -84.17 -0.62 1.71 16 7 C -0.18 -2.95 10.03 -39.79 -0.40 -3.35 16 8 C -0.06 -1.03 9.96 -39.91 -0.40 -1.43 16 9 C -0.17 -3.33 8.86 -39.95 -0.35 -3.69 16 10 C 0.05 1.14 4.74 -104.62 -0.50 0.64 16 11 C 0.06 1.33 2.44 -92.93 -0.23 1.11 16 12 H 0.05 1.28 4.30 -51.93 -0.22 1.06 16 13 C -0.13 -3.08 8.71 37.16 0.32 -2.76 16 14 C -0.50 -13.17 8.33 -34.44 -0.29 -13.46 16 15 H 0.06 1.54 7.73 -52.49 -0.41 1.13 16 16 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 17 N -0.89 -23.98 11.32 55.43 0.63 -23.35 16 18 Si 0.89 20.69 29.54 -169.99 -5.02 15.67 16 19 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 C -0.18 -3.76 6.15 -105.21 -0.65 -4.41 16 23 H 0.08 1.31 8.14 -51.92 -0.42 0.88 16 24 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 25 H 0.11 2.11 6.21 -51.93 -0.32 1.79 16 26 H 0.11 1.45 8.06 -52.48 -0.42 1.03 16 27 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 28 H 0.13 2.44 7.18 -52.49 -0.38 2.06 16 29 H 0.03 0.67 7.06 -51.93 -0.37 0.30 16 30 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.09 2.20 6.07 -51.93 -0.32 1.88 16 32 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 LS Contribution 266.92 15.07 4.02 4.02 Total: -1.00 -28.72 266.92 -8.05 -36.77 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -4.90 Total: 3.57 kcal Atomic # 6 Polarization: -19.92 SS G_CDS: -3.46 Total: -23.38 kcal Atomic # 7 Polarization: -37.95 SS G_CDS: 1.30 Total: -36.65 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -28.72 -8.05 -36.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261285966.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.679 kcal (2) G-P(sol) polarization free energy of solvation -28.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds