Wall clock time and date at job start Mon Mar 30 2020 03:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30241 * 126.10659 * 2 1 4 4 N 1.39880 * 110.08241 * 179.44190 * 3 2 1 5 5 H 0.97002 * 125.46046 * 179.97438 * 4 3 2 6 6 C 1.37038 * 109.07519 * 0.66240 * 4 3 2 7 7 C 1.39286 * 133.84614 * 179.28253 * 6 4 3 8 8 C 1.36584 * 119.85489 * 180.02562 * 7 6 4 9 9 C 1.38965 * 120.81297 * 359.97438 * 8 7 6 10 10 C 1.36468 * 120.62705 * 0.02562 * 9 8 7 11 11 C 1.50703 * 120.17695 * 180.02562 * 10 9 8 12 12 H 1.09001 * 109.47032 * 173.75155 * 11 10 9 13 13 C 1.53001 * 109.47215 * 53.75439 * 11 10 9 14 14 C 1.50692 * 109.47032 * 293.74982 * 11 10 9 15 15 H 1.07999 * 120.00357 * 359.72968 * 14 11 10 16 16 C 1.37887 * 119.99930 * 180.02562 * 14 11 10 17 17 N 1.31513 * 119.99839 * 0.02562 * 16 14 11 18 18 Si 1.86797 * 119.99854 * 180.02562 * 16 14 11 19 19 H 1.48502 * 109.47458 * 0.02562 * 18 16 14 20 20 H 1.48507 * 109.47004 * 120.00264 * 18 16 14 21 21 H 1.48499 * 109.47345 * 239.99677 * 18 16 14 22 22 C 1.39937 * 119.63848 * 0.29431 * 10 9 8 23 23 H 1.09011 * 109.47070 * 263.69118 * 1 2 3 24 24 H 1.08995 * 109.47109 * 23.69747 * 1 2 3 25 25 H 1.09006 * 109.47114 * 143.69992 * 1 2 3 26 26 H 1.08010 * 120.07150 * 0.04603 * 7 6 4 27 27 H 1.08000 * 119.59485 * 180.02562 * 8 7 6 28 28 H 1.07996 * 119.68854 * 180.02562 * 9 8 7 29 29 H 1.09001 * 109.46889 * 299.99804 * 13 11 10 30 30 H 1.09003 * 109.47336 * 60.00154 * 13 11 10 31 31 H 1.09003 * 109.47230 * 180.02562 * 13 11 10 32 32 H 0.96999 * 119.99460 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2745 1.0522 0.0000 4 7 3.6189 0.6662 0.0128 5 1 4.3778 1.2702 0.0149 6 6 3.6919 -0.7023 0.0063 7 6 4.7465 -1.6122 0.0004 8 6 4.4873 -2.9532 -0.0060 9 6 3.1805 -3.4257 -0.0064 10 6 2.1274 -2.5578 -0.0008 11 6 0.7142 -3.0813 -0.0006 12 1 0.0189 -2.2500 0.1161 13 6 0.5342 -4.0633 1.1588 14 6 0.4398 -3.7867 -1.3037 15 1 1.2100 -3.8458 -2.0584 16 6 -0.7968 -4.3513 -1.5348 17 7 -1.7368 -4.2738 -0.6183 18 14 -1.1368 -5.2263 -3.1498 19 1 0.0760 -5.1753 -4.0053 20 1 -1.4926 -6.6426 -2.8801 21 1 -2.2639 -4.5572 -3.8476 22 6 2.3669 -1.1790 -0.0009 23 1 -0.3634 -0.1129 1.0215 24 1 -0.3633 0.9410 -0.4130 25 1 -0.3634 -0.8283 -0.6084 26 1 5.7669 -1.2581 0.0014 27 1 5.3082 -3.6550 -0.0101 28 1 2.9965 -4.4899 -0.0111 29 1 1.2296 -4.8945 1.0421 30 1 0.7327 -3.5530 2.1013 31 1 -0.4878 -4.4423 1.1586 32 1 -2.6065 -4.6713 -0.7808 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261285966.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:32 Heat of formation + Delta-G solvation = 54.690716 kcal Electronic energy + Delta-G solvation = -15794.460008 eV Core-core repulsion = 13334.000804 eV Total energy + Delta-G solvation = -2460.459204 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.15999 -38.49654 -36.23186 -34.16863 -32.58021 -30.58675 -29.91925 -28.34787 -27.13355 -24.40339 -23.18466 -21.79998 -20.64870 -18.36833 -18.13427 -17.48342 -16.52879 -15.94566 -15.86978 -15.46805 -14.78116 -14.54982 -13.87321 -13.77173 -13.57823 -13.24330 -13.02857 -12.85511 -12.76119 -12.58690 -12.31359 -12.11859 -11.91629 -11.58902 -11.09730 -10.97412 -10.56094 -10.32489 -9.45996 -8.64909 -8.02475 -6.14602 0.15365 0.73191 1.42879 1.46428 1.54571 1.57172 1.87313 2.47719 3.03599 3.25137 3.64068 3.79036 3.92548 4.29434 4.49750 4.61389 4.73040 4.75321 4.82324 4.89542 5.01769 5.05924 5.26549 5.30366 5.40380 5.53966 5.63806 5.66593 5.78856 6.08781 6.17655 6.21435 6.44238 6.52967 6.73341 6.92278 7.51547 9.01110 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.028015 B = 0.009041 C = 0.007995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.209963 B = 3096.405551 C = 3501.280554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.102 3.898 3 N -0.282 5.282 4 N -0.509 5.509 5 H 0.450 0.550 6 C 0.120 3.880 7 C -0.166 4.166 8 C -0.058 4.058 9 C -0.180 4.180 10 C 0.021 3.979 11 C 0.054 3.946 12 H 0.041 0.959 13 C -0.122 4.122 14 C -0.513 4.513 15 H 0.044 0.956 16 C 0.021 3.979 17 N -0.911 5.911 18 Si 0.946 3.054 19 H -0.273 1.273 20 H -0.280 1.280 21 H -0.282 1.282 22 C -0.212 4.212 23 H 0.087 0.913 24 H 0.089 0.911 25 H 0.079 0.921 26 H 0.156 0.844 27 H 0.159 0.841 28 H 0.119 0.881 29 H 0.032 0.968 30 H 0.020 0.980 31 H 0.062 0.938 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.906 5.073 1.810 11.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.075 4.075 3 N -0.098 5.098 4 N -0.226 5.226 5 H 0.297 0.703 6 C 0.004 3.996 7 C -0.188 4.188 8 C -0.078 4.078 9 C -0.199 4.199 10 C 0.019 3.981 11 C 0.036 3.964 12 H 0.058 0.942 13 C -0.180 4.180 14 C -0.551 4.551 15 H 0.062 0.938 16 C -0.178 4.178 17 N -0.550 5.550 18 Si 0.772 3.228 19 H -0.198 1.198 20 H -0.206 1.206 21 H -0.208 1.208 22 C -0.220 4.220 23 H 0.106 0.894 24 H 0.108 0.892 25 H 0.098 0.902 26 H 0.174 0.826 27 H 0.177 0.823 28 H 0.137 0.863 29 H 0.051 0.949 30 H 0.039 0.961 31 H 0.081 0.919 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 9.766 6.329 1.842 11.783 hybrid contribution -0.135 -1.100 -0.822 1.380 sum 9.631 5.229 1.020 11.007 Atomic orbital electron populations 1.20422 0.85130 1.03964 1.03944 1.23798 0.97492 0.88840 0.97379 1.76348 0.88211 1.23239 1.21958 1.45689 1.05399 1.03322 1.68172 0.70346 1.19122 0.95677 0.85389 0.99387 1.20016 0.97262 0.91521 1.09965 1.21057 0.96647 0.95221 0.94875 1.20702 0.92522 0.99857 1.06860 1.19838 0.97869 0.90297 0.90143 1.18083 0.88424 0.95419 0.94439 0.94152 1.21651 1.02152 0.98572 0.95626 1.21281 0.97747 1.35163 1.00896 0.93759 1.25553 0.96045 0.96912 0.99263 1.69989 1.04351 1.46051 1.34621 0.85694 0.77910 0.78464 0.80713 1.19796 1.20597 1.20767 1.20018 0.92763 0.94310 1.14866 0.89440 0.89228 0.90244 0.82602 0.82313 0.86345 0.94916 0.96109 0.91922 0.92954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.73 9.18 71.24 0.65 -2.07 16 2 C 0.10 4.00 7.43 44.79 0.33 4.33 16 3 N -0.28 -10.16 12.55 -43.69 -0.55 -10.71 16 4 N -0.51 -15.71 7.37 -51.53 -0.38 -16.09 16 5 H 0.45 9.98 8.96 -213.46 -1.91 8.07 16 6 C 0.12 4.12 7.34 39.21 0.29 4.41 16 7 C -0.17 -4.69 10.03 22.14 0.22 -4.47 16 8 C -0.06 -1.71 9.96 22.06 0.22 -1.49 16 9 C -0.18 -6.89 8.86 22.03 0.20 -6.70 16 10 C 0.02 0.92 4.74 -19.87 -0.09 0.82 16 11 C 0.05 2.68 2.44 -12.29 -0.03 2.65 16 12 H 0.04 2.07 4.30 -2.39 -0.01 2.05 16 13 C -0.12 -5.82 8.71 71.98 0.63 -5.20 16 14 C -0.51 -27.52 8.33 25.60 0.21 -27.30 16 15 H 0.04 2.43 7.73 -2.91 -0.02 2.41 16 16 C 0.02 1.14 5.30 84.66 0.45 1.59 16 17 N -0.91 -50.29 11.32 21.45 0.24 -50.05 16 18 Si 0.95 42.92 29.54 68.60 2.03 44.95 16 19 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 20 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 21 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 22 C -0.21 -8.75 6.15 -20.24 -0.12 -8.87 16 23 H 0.09 2.91 8.14 -2.38 -0.02 2.89 16 24 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 25 H 0.08 3.29 6.21 -2.38 -0.01 3.27 16 26 H 0.16 3.07 8.06 -2.91 -0.02 3.05 16 27 H 0.16 3.38 8.06 -2.91 -0.02 3.36 16 28 H 0.12 4.58 7.18 -2.91 -0.02 4.56 16 29 H 0.03 1.47 7.06 -2.39 -0.02 1.46 16 30 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.06 3.27 6.07 -2.39 -0.01 3.25 16 32 H 0.26 13.75 8.31 -92.71 -0.77 12.98 16 Total: -1.00 -62.02 266.92 3.52 -58.50 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: -0.77 Total: 15.71 kcal Atomic # 6 Polarization: -45.26 SS G_CDS: 2.95 Total: -42.31 kcal Atomic # 7 Polarization: -76.16 SS G_CDS: -0.69 Total: -76.84 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Total: -62.02 3.52 -58.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261285966.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.186 kcal (2) G-P(sol) polarization free energy of solvation -62.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds