Wall clock time and date at job start Mon Mar 30 2020 03:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31052 * 1 3 3 Si 1.86798 * 120.00208 * 2 1 4 4 H 1.48499 * 109.47461 * 270.00215 * 3 2 1 5 5 H 1.48503 * 109.47225 * 30.00368 * 3 2 1 6 6 H 1.48502 * 109.47020 * 150.00162 * 3 2 1 7 7 C 1.39736 * 119.99704 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99698 * 199.41390 * 7 2 1 9 9 C 1.40888 * 120.00229 * 19.41141 * 7 2 1 10 10 C 1.38906 * 126.93044 * 211.00796 * 9 7 2 11 11 C 1.50692 * 125.35830 * 0.02562 * 10 9 7 12 12 C 1.52999 * 109.47244 * 84.97361 * 11 10 9 13 13 N 1.46903 * 109.47301 * 179.97438 * 12 11 10 14 14 N 1.35637 * 109.27968 * 180.02562 * 10 9 7 15 15 H 0.96999 * 124.68759 * 180.02562 * 14 10 9 16 16 C 1.38146 * 110.62519 * 359.97438 * 14 10 9 17 17 C 1.39120 * 132.81084 * 179.97438 * 16 14 10 18 18 C 1.37866 * 119.97144 * 180.02562 * 17 16 14 19 19 C 1.38675 * 120.62250 * 359.97438 * 18 17 16 20 20 C 1.37870 * 120.25452 * 0.02562 * 19 18 17 21 21 C 1.39192 * 119.69265 * 0.27511 * 20 19 18 22 22 H 0.97004 * 119.99737 * 355.29579 * 1 2 3 23 23 H 1.08998 * 109.47208 * 204.97829 * 11 10 9 24 24 H 1.09010 * 109.47323 * 324.97775 * 11 10 9 25 25 H 1.08998 * 109.47400 * 300.00351 * 12 11 10 26 26 H 1.08997 * 109.46925 * 60.00128 * 12 11 10 27 27 H 1.00903 * 110.99844 * 56.04894 * 13 12 11 28 28 H 1.00897 * 111.00041 * 180.02562 * 13 12 11 29 29 H 1.08000 * 120.01188 * 359.97438 * 17 16 14 30 30 H 1.07993 * 119.68409 * 180.02562 * 18 17 16 31 31 H 1.08005 * 119.87093 * 180.02562 * 19 18 17 32 32 H 1.08002 * 120.15719 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3105 0.0000 0.0000 3 14 2.2446 1.6177 0.0000 4 1 2.4921 2.0465 -1.4000 5 1 1.4421 2.6527 0.7001 6 1 3.5421 1.4400 0.7000 7 6 2.0091 -1.2102 -0.0005 8 1 3.0431 -1.2369 0.3104 9 6 1.3647 -2.3955 -0.4066 10 6 1.6191 -3.6823 0.0503 11 6 2.6508 -4.0525 1.0844 12 6 2.0552 -3.8810 2.4832 13 7 3.0607 -4.2425 3.4913 14 7 0.7927 -4.5532 -0.5809 15 1 0.7809 -5.5113 -0.4298 16 6 -0.0305 -3.8869 -1.4679 17 6 -1.0291 -4.3164 -2.3362 18 6 -1.6992 -3.4024 -3.1212 19 6 -1.3885 -2.0525 -3.0553 20 6 -0.4020 -1.6077 -2.2010 21 6 0.2863 -2.5210 -1.4076 22 1 -0.4850 0.8373 0.0689 23 1 2.9515 -5.0905 0.9423 24 1 3.5208 -3.4044 0.9780 25 1 1.7545 -2.8430 2.6254 26 1 1.1853 -4.5290 2.5897 27 1 3.9030 -3.6997 3.3727 28 1 2.6912 -4.1379 4.4244 29 1 -1.2787 -5.3655 -2.3957 30 1 -2.4738 -3.7409 -3.7933 31 1 -1.9214 -1.3470 -3.6755 32 1 -0.1611 -0.5561 -2.1512 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261288758.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:06 Heat of formation + Delta-G solvation = 39.267330 kcal Electronic energy + Delta-G solvation = -15646.307971 eV Core-core repulsion = 13185.179959 eV Total energy + Delta-G solvation = -2461.128012 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.69361 -35.99210 -34.42880 -33.61501 -30.42567 -29.53336 -28.42870 -26.69766 -24.47571 -22.06505 -20.82690 -20.14762 -18.96379 -16.84488 -15.96512 -15.35511 -15.08793 -14.78685 -14.27293 -13.52076 -13.48122 -12.88962 -12.76826 -12.63967 -12.37708 -11.38758 -11.34173 -11.19547 -11.02677 -10.92216 -10.46797 -10.25002 -10.21856 -10.02293 -9.38680 -8.94665 -8.29817 -8.20786 -6.89805 -6.64731 -6.31166 -3.99942 2.36214 2.80964 3.07762 3.17318 3.19458 3.98290 4.10658 4.46345 4.98434 5.09232 5.45940 5.78327 5.84428 6.03416 6.05349 6.16166 6.20808 6.47250 6.57256 6.67311 6.80157 6.92016 6.95087 7.15324 7.32456 7.37903 7.50636 7.57764 7.76494 7.78900 7.98115 8.23989 8.37133 8.69515 8.84946 9.12879 9.15345 10.46828 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.015572 B = 0.013894 C = 0.007779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.697035 B = 2014.771629 C = 3598.748724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.080 3.920 3 Si 0.896 3.104 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.459 4.459 8 H 0.074 0.926 9 C 0.080 3.920 10 C -0.123 4.123 11 C -0.007 4.007 12 C 0.065 3.935 13 N -0.858 5.858 14 N -0.589 5.589 15 H 0.391 0.609 16 C 0.098 3.902 17 C -0.170 4.170 18 C -0.107 4.107 19 C -0.205 4.205 20 C -0.011 4.011 21 C -0.102 4.102 22 H 0.275 0.725 23 H 0.047 0.953 24 H 0.065 0.935 25 H 0.041 0.959 26 H 0.059 0.941 27 H 0.336 0.664 28 H 0.333 0.667 29 H 0.097 0.903 30 H 0.102 0.898 31 H 0.100 0.900 32 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.930 -3.412 0.438 3.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.135 4.135 3 Si 0.722 3.278 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.491 4.491 8 H 0.092 0.908 9 C 0.074 3.926 10 C -0.226 4.226 11 C -0.046 4.046 12 C -0.066 4.066 13 N -0.386 5.386 14 N -0.192 5.192 15 H 0.224 0.776 16 C -0.012 4.012 17 C -0.192 4.192 18 C -0.126 4.126 19 C -0.226 4.226 20 C -0.029 4.029 21 C -0.108 4.108 22 H 0.085 0.915 23 H 0.066 0.934 24 H 0.084 0.916 25 H 0.059 0.941 26 H 0.077 0.923 27 H 0.148 0.852 28 H 0.144 0.856 29 H 0.115 0.885 30 H 0.121 0.879 31 H 0.118 0.882 32 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.784 -4.068 0.152 4.145 hybrid contribution 0.050 1.365 0.416 1.428 sum 0.834 -2.702 0.568 2.885 Atomic orbital electron populations 1.69949 1.07084 1.28492 1.38104 1.25659 0.94542 1.00225 0.93082 0.86523 0.80461 0.81739 0.79083 1.19604 1.20756 1.19084 1.18501 0.98050 0.90437 1.42118 0.90840 1.17797 0.92328 0.90702 0.91764 1.20003 1.05555 0.89987 1.07094 1.19437 0.95313 0.99385 0.90418 1.21852 0.93837 0.99333 0.91531 1.58881 1.08885 1.64207 1.06607 1.40868 1.33326 1.07558 1.37445 0.77602 1.18231 0.95204 0.92808 0.94982 1.19685 1.00112 0.98093 1.01269 1.20407 0.99507 0.93320 0.99375 1.20623 1.02546 0.95047 1.04350 1.20656 0.91974 0.99008 0.91270 1.19296 1.01122 0.90658 0.99764 0.91492 0.93392 0.91601 0.94091 0.92269 0.85219 0.85612 0.88469 0.87940 0.88151 0.86410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.14 10.31 55.54 0.57 -20.56 16 2 C 0.08 2.01 4.89 -17.32 -0.08 1.93 16 3 Si 0.90 19.06 29.60 -169.99 -5.03 14.02 16 4 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 5 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 6 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 7 C -0.46 -12.00 8.96 -38.02 -0.34 -12.34 16 8 H 0.07 1.87 7.63 -52.48 -0.40 1.47 16 9 C 0.08 2.10 5.72 -104.79 -0.60 1.50 16 10 C -0.12 -2.83 6.48 -80.67 -0.52 -3.35 16 11 C -0.01 -0.13 5.76 -27.89 -0.16 -0.29 16 12 C 0.06 1.18 6.77 -3.82 -0.03 1.15 16 13 N -0.86 -12.77 9.62 -10.37 -0.10 -12.87 16 14 N -0.59 -12.62 5.99 -6.14 -0.04 -12.66 16 15 H 0.39 7.00 8.96 -40.82 -0.37 6.63 16 16 C 0.10 2.28 7.23 -83.89 -0.61 1.67 16 17 C -0.17 -3.49 10.07 -39.39 -0.40 -3.89 16 18 C -0.11 -2.12 10.01 -39.56 -0.40 -2.51 16 19 C -0.21 -4.38 10.03 -39.55 -0.40 -4.78 16 20 C -0.01 -0.26 8.75 -39.36 -0.34 -0.60 16 21 C -0.10 -2.62 5.79 -104.89 -0.61 -3.23 16 22 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 23 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.07 1.29 7.77 -51.92 -0.40 0.89 16 25 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 27 H 0.34 4.63 8.99 -39.29 -0.35 4.28 16 28 H 0.33 4.29 9.08 -39.29 -0.36 3.93 16 29 H 0.10 1.71 8.06 -52.49 -0.42 1.28 16 30 H 0.10 1.68 8.06 -52.49 -0.42 1.26 16 31 H 0.10 1.87 8.06 -52.48 -0.42 1.45 16 32 H 0.12 2.97 6.31 -52.49 -0.33 2.64 16 LS Contribution 272.97 15.07 4.11 4.11 Total: -1.00 -28.19 272.97 -8.85 -37.04 By element: Atomic # 1 Polarization: 19.54 SS G_CDS: -3.88 Total: 15.66 kcal Atomic # 6 Polarization: -20.26 SS G_CDS: -4.48 Total: -24.74 kcal Atomic # 7 Polarization: -46.53 SS G_CDS: 0.44 Total: -46.09 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.03 Total: 14.02 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -28.19 -8.85 -37.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261288758.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.307 kcal (2) G-P(sol) polarization free energy of solvation -28.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds