Wall clock time and date at job start Mon Mar 30 2020 03:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31052 * 1 3 3 Si 1.86798 * 120.00208 * 2 1 4 4 H 1.48499 * 109.47461 * 270.00215 * 3 2 1 5 5 H 1.48503 * 109.47225 * 30.00368 * 3 2 1 6 6 H 1.48502 * 109.47020 * 150.00162 * 3 2 1 7 7 C 1.39736 * 119.99704 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99698 * 199.41390 * 7 2 1 9 9 C 1.40888 * 120.00229 * 19.41141 * 7 2 1 10 10 C 1.38906 * 126.93044 * 211.00796 * 9 7 2 11 11 C 1.50692 * 125.35830 * 0.02562 * 10 9 7 12 12 C 1.52999 * 109.47244 * 84.97361 * 11 10 9 13 13 N 1.46903 * 109.47301 * 179.97438 * 12 11 10 14 14 N 1.35637 * 109.27968 * 180.02562 * 10 9 7 15 15 H 0.96999 * 124.68759 * 180.02562 * 14 10 9 16 16 C 1.38146 * 110.62519 * 359.97438 * 14 10 9 17 17 C 1.39120 * 132.81084 * 179.97438 * 16 14 10 18 18 C 1.37866 * 119.97144 * 180.02562 * 17 16 14 19 19 C 1.38675 * 120.62250 * 359.97438 * 18 17 16 20 20 C 1.37870 * 120.25452 * 0.02562 * 19 18 17 21 21 C 1.39192 * 119.69265 * 0.27511 * 20 19 18 22 22 H 0.97004 * 119.99737 * 355.29579 * 1 2 3 23 23 H 1.08998 * 109.47208 * 204.97829 * 11 10 9 24 24 H 1.09010 * 109.47323 * 324.97775 * 11 10 9 25 25 H 1.08998 * 109.47400 * 300.00351 * 12 11 10 26 26 H 1.08997 * 109.46925 * 60.00128 * 12 11 10 27 27 H 1.00903 * 110.99844 * 56.04894 * 13 12 11 28 28 H 1.00897 * 111.00041 * 180.02562 * 13 12 11 29 29 H 1.08000 * 120.01188 * 359.97438 * 17 16 14 30 30 H 1.07993 * 119.68409 * 180.02562 * 18 17 16 31 31 H 1.08005 * 119.87093 * 180.02562 * 19 18 17 32 32 H 1.08002 * 120.15719 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3105 0.0000 0.0000 3 14 2.2446 1.6177 0.0000 4 1 2.4921 2.0465 -1.4000 5 1 1.4421 2.6527 0.7001 6 1 3.5421 1.4400 0.7000 7 6 2.0091 -1.2102 -0.0005 8 1 3.0431 -1.2369 0.3104 9 6 1.3647 -2.3955 -0.4066 10 6 1.6191 -3.6823 0.0503 11 6 2.6508 -4.0525 1.0844 12 6 2.0552 -3.8810 2.4832 13 7 3.0607 -4.2425 3.4913 14 7 0.7927 -4.5532 -0.5809 15 1 0.7809 -5.5113 -0.4298 16 6 -0.0305 -3.8869 -1.4679 17 6 -1.0291 -4.3164 -2.3362 18 6 -1.6992 -3.4024 -3.1212 19 6 -1.3885 -2.0525 -3.0553 20 6 -0.4020 -1.6077 -2.2010 21 6 0.2863 -2.5210 -1.4076 22 1 -0.4850 0.8373 0.0689 23 1 2.9515 -5.0905 0.9423 24 1 3.5208 -3.4044 0.9780 25 1 1.7545 -2.8430 2.6254 26 1 1.1853 -4.5290 2.5897 27 1 3.9030 -3.6997 3.3727 28 1 2.6912 -4.1379 4.4244 29 1 -1.2787 -5.3655 -2.3957 30 1 -2.4738 -3.7409 -3.7933 31 1 -1.9214 -1.3470 -3.6755 32 1 -0.1611 -0.5561 -2.1512 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261288758.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:05 Heat of formation + Delta-G solvation = 21.129495 kcal Electronic energy + Delta-G solvation = -15647.094486 eV Core-core repulsion = 13185.179959 eV Total energy + Delta-G solvation = -2461.914527 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.43451 -37.64437 -35.90761 -35.45058 -32.17892 -31.11091 -30.18696 -28.37686 -26.28856 -23.63529 -22.50430 -21.88436 -20.72866 -18.59967 -17.76544 -16.76008 -16.72422 -16.54020 -15.84258 -15.15703 -15.07393 -14.56980 -14.40544 -14.31238 -14.12730 -13.14453 -12.97072 -12.85919 -12.71423 -12.55051 -12.10842 -11.94665 -11.90288 -11.71664 -11.15996 -10.79760 -9.98121 -9.62594 -8.62885 -8.50053 -8.11672 -5.90438 0.63846 1.09208 1.36797 1.42107 1.50913 2.18973 2.33230 2.79504 3.19101 3.59109 3.79758 4.20158 4.30554 4.47924 4.49239 4.54148 4.62696 4.88716 4.94236 5.04729 5.15371 5.25603 5.29545 5.45560 5.49473 5.62129 5.86935 6.02149 6.20133 6.23209 6.47341 6.48894 6.62777 6.85557 7.09851 7.23621 7.41668 8.62997 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.015572 B = 0.013894 C = 0.007779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.697035 B = 2014.771629 C = 3598.748724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.040 3.960 3 Si 0.960 3.040 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.485 4.485 8 H 0.067 0.933 9 C 0.025 3.975 10 C -0.107 4.107 11 C -0.003 4.003 12 C 0.080 3.920 13 N -0.847 5.847 14 N -0.580 5.580 15 H 0.409 0.591 16 C 0.077 3.923 17 C -0.163 4.163 18 C -0.104 4.104 19 C -0.201 4.201 20 C -0.043 4.043 21 C -0.140 4.140 22 H 0.275 0.725 23 H 0.069 0.931 24 H 0.061 0.939 25 H 0.009 0.991 26 H 0.057 0.943 27 H 0.345 0.655 28 H 0.348 0.652 29 H 0.134 0.866 30 H 0.147 0.853 31 H 0.125 0.875 32 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.619 -4.908 0.125 4.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.171 4.171 3 Si 0.784 3.216 4 H -0.197 1.197 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.518 4.518 8 H 0.085 0.915 9 C 0.019 3.981 10 C -0.212 4.212 11 C -0.042 4.042 12 C -0.051 4.051 13 N -0.377 5.377 14 N -0.185 5.185 15 H 0.246 0.754 16 C -0.033 4.033 17 C -0.185 4.185 18 C -0.123 4.123 19 C -0.221 4.221 20 C -0.062 4.062 21 C -0.146 4.146 22 H 0.085 0.915 23 H 0.088 0.912 24 H 0.079 0.921 25 H 0.028 0.972 26 H 0.076 0.924 27 H 0.157 0.843 28 H 0.160 0.840 29 H 0.152 0.848 30 H 0.165 0.835 31 H 0.143 0.857 32 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.476 -5.596 -0.151 5.619 hybrid contribution 0.109 1.673 0.480 1.744 sum 0.585 -3.923 0.329 3.980 Atomic orbital electron populations 1.70031 1.08337 1.29054 1.39639 1.26318 0.95204 1.02969 0.92643 0.85538 0.79314 0.77897 0.78872 1.19656 1.20106 1.18512 1.18642 0.97918 0.91670 1.43599 0.91504 1.18224 0.94273 0.92013 0.93596 1.20504 1.04832 0.89608 1.06234 1.19474 0.94191 1.00349 0.90168 1.21536 0.94470 0.97384 0.91748 1.58807 1.08315 1.63878 1.06733 1.40828 1.32560 1.08351 1.36727 0.75438 1.18577 0.96414 0.92185 0.96142 1.20157 0.98440 1.00209 0.99655 1.20896 0.99822 0.92286 0.99303 1.20974 1.01186 0.96729 1.03214 1.20673 0.94122 0.98109 0.93297 1.19611 1.01987 0.92420 1.00588 0.91483 0.91243 0.92086 0.97248 0.92426 0.84259 0.83976 0.84787 0.83506 0.85730 0.88599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.01 10.31 21.80 0.22 -45.79 16 2 C 0.04 2.10 4.89 85.17 0.42 2.51 16 3 Si 0.96 40.52 29.60 68.60 2.03 42.56 16 4 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 5 H -0.28 -11.22 7.11 99.48 0.71 -10.52 16 6 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 7 C -0.49 -26.54 8.96 23.28 0.21 -26.33 16 8 H 0.07 3.56 7.63 -2.91 -0.02 3.54 16 9 C 0.03 1.36 5.72 -19.98 -0.11 1.24 16 10 C -0.11 -4.93 6.48 42.13 0.27 -4.66 16 11 C 0.00 -0.12 5.76 29.85 0.17 0.05 16 12 C 0.08 2.86 6.77 86.30 0.58 3.44 16 13 N -0.85 -23.76 9.62 -186.72 -1.80 -25.56 16 14 N -0.58 -24.25 5.99 -173.35 -1.04 -25.28 16 15 H 0.41 13.76 8.96 -92.71 -0.83 12.93 16 16 C 0.08 3.51 7.23 38.87 0.28 3.79 16 17 C -0.16 -6.23 10.07 22.39 0.23 -6.01 16 18 C -0.10 -3.79 10.01 22.29 0.22 -3.56 16 19 C -0.20 -8.34 10.03 22.29 0.22 -8.11 16 20 C -0.04 -2.18 8.75 22.41 0.20 -1.98 16 21 C -0.14 -7.36 5.79 -20.04 -0.12 -7.48 16 22 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 23 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 24 H 0.06 2.40 7.77 -2.38 -0.02 2.38 16 25 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 26 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 27 H 0.34 8.94 8.99 -89.69 -0.81 8.13 16 28 H 0.35 8.29 9.08 -89.70 -0.81 7.47 16 29 H 0.13 4.08 8.06 -2.91 -0.02 4.06 16 30 H 0.15 4.04 8.06 -2.91 -0.02 4.01 16 31 H 0.12 4.43 8.06 -2.91 -0.02 4.40 16 32 H 0.10 5.11 6.31 -2.91 -0.02 5.09 16 Total: -1.00 -62.93 272.97 0.71 -62.22 By element: Atomic # 1 Polarization: 40.23 SS G_CDS: -1.29 Total: 38.94 kcal Atomic # 6 Polarization: -49.67 SS G_CDS: 2.57 Total: -47.09 kcal Atomic # 7 Polarization: -94.02 SS G_CDS: -2.61 Total: -96.63 kcal Atomic # 14 Polarization: 40.52 SS G_CDS: 2.03 Total: 42.56 kcal Total: -62.93 0.71 -62.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261288758.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.353 kcal (2) G-P(sol) polarization free energy of solvation -62.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds