Wall clock time and date at job start Mon Mar 30 2020 03:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37791 * 120.10736 * 2 1 4 4 C 1.38791 * 120.66406 * 179.72340 * 3 2 1 5 5 C 1.36662 * 120.52759 * 0.30600 * 4 3 2 6 6 C 1.39585 * 119.76703 * 359.97438 * 5 4 3 7 7 C 1.46482 * 134.03814 * 180.02562 * 6 5 4 8 8 C 1.50699 * 126.50073 * 359.97438 * 7 6 5 9 9 H 1.09001 * 109.47358 * 40.00051 * 8 7 6 10 10 N 1.46904 * 109.47359 * 160.00219 * 8 7 6 11 11 C 1.50699 * 109.47063 * 280.00192 * 8 7 6 12 12 H 1.07998 * 120.00323 * 0.02562 * 11 8 7 13 13 C 1.37882 * 120.00131 * 179.97438 * 11 8 7 14 14 N 1.31515 * 119.99749 * 0.02562 * 13 11 8 15 15 Si 1.86795 * 120.00053 * 180.02562 * 13 11 8 16 16 H 1.48503 * 109.47273 * 90.00055 * 15 13 11 17 17 H 1.48504 * 109.46984 * 210.00111 * 15 13 11 18 18 H 1.48502 * 109.47327 * 329.99800 * 15 13 11 19 19 C 1.34238 * 107.00425 * 179.97438 * 7 6 5 20 20 N 1.36837 * 109.93565 * 0.02562 * 19 7 6 21 21 H 0.96996 * 125.06611 * 179.97438 * 20 19 7 22 22 C 1.37694 * 109.87294 * 359.97438 * 20 19 7 23 23 H 1.08998 * 109.47156 * 89.99576 * 1 2 3 24 24 H 1.09003 * 109.47069 * 209.99416 * 1 2 3 25 25 H 1.08998 * 109.47133 * 329.99893 * 1 2 3 26 26 H 1.08002 * 119.67133 * 0.02562 * 3 2 1 27 27 H 1.08004 * 119.73736 * 180.27825 * 4 3 2 28 28 H 1.08005 * 120.11636 * 180.02562 * 5 4 3 29 29 H 1.00898 * 110.99684 * 296.04785 * 10 8 7 30 30 H 1.00900 * 110.99508 * 60.00071 * 10 8 7 31 31 H 0.97006 * 120.00255 * 180.02562 * 14 13 11 32 32 H 1.07996 * 125.03804 * 180.02562 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1920 0.0000 4 6 3.5860 1.2055 0.0058 5 6 4.2916 0.0351 0.0053 6 6 3.6117 -1.1840 -0.0006 7 6 4.0355 -2.5861 -0.0023 8 6 5.4544 -3.0938 0.0018 9 1 6.0592 -2.4766 0.6661 10 7 5.4753 -4.4853 0.4723 11 6 6.0156 -3.0274 -1.3952 12 1 5.4060 -2.6545 -2.2050 13 6 7.3078 -3.4418 -1.6395 14 7 8.0503 -3.8955 -0.6533 15 14 8.0037 -3.3588 -3.3710 16 1 8.6513 -2.0391 -3.5815 17 1 9.0079 -4.4377 -3.5530 18 1 6.9053 -3.5339 -4.3549 19 6 2.9202 -3.3333 -0.0082 20 7 1.8166 -2.5242 -0.0109 21 1 0.8978 -2.8350 -0.0155 22 6 2.2048 -1.2031 -0.0062 23 1 -0.3633 0.0001 -1.0276 24 1 -0.3633 -0.8901 0.5138 25 1 -0.3633 0.8900 0.5138 26 1 1.6546 2.1252 0.0004 27 1 4.1126 2.1485 0.0102 28 1 5.3715 0.0534 0.0102 29 1 5.1640 -4.5479 1.4300 30 1 4.9213 -5.0781 -0.1275 31 1 8.9596 -4.1867 -0.8250 32 1 2.8972 -4.4130 -0.0104 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261292429.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:37 Heat of formation + Delta-G solvation = 52.617341 kcal Electronic energy + Delta-G solvation = -15492.433267 eV Core-core repulsion = 13031.884155 eV Total energy + Delta-G solvation = -2460.549112 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.72329 -36.69384 -34.57903 -32.60381 -31.35385 -29.21559 -27.81758 -26.42980 -25.86301 -22.27591 -21.50907 -21.20365 -18.06690 -17.28185 -16.29738 -15.62560 -14.89177 -14.46510 -14.20541 -13.97504 -13.79736 -12.98200 -12.89932 -12.86242 -12.31872 -12.11757 -11.87542 -11.25100 -11.00857 -10.90256 -10.71370 -10.62683 -10.36175 -9.81634 -9.29868 -8.63524 -8.32746 -7.67120 -7.07834 -6.85786 -5.78053 -3.91866 1.62877 2.13896 3.38564 3.38941 3.45752 3.51356 3.66141 4.41540 4.58517 5.09123 5.18696 5.40405 5.45472 5.51473 5.60488 5.64674 5.81256 5.97316 6.06954 6.18819 6.36940 6.46054 6.61800 6.72668 6.96432 7.14343 7.28404 7.44673 7.60944 7.76919 8.01073 8.06774 8.35233 8.74315 9.09551 9.25021 9.76013 11.25621 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.032150 B = 0.007697 C = 0.006949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.698580 B = 3637.071664 C = 4028.440209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.115 4.115 3 C -0.106 4.106 4 C -0.163 4.163 5 C -0.053 4.053 6 C -0.095 4.095 7 C -0.137 4.137 8 C 0.283 3.717 9 H 0.045 0.955 10 N -0.810 5.810 11 C -0.522 4.522 12 H 0.051 0.949 13 C 0.082 3.918 14 N -0.850 5.850 15 Si 0.881 3.119 16 H -0.282 1.282 17 H -0.288 1.288 18 H -0.277 1.277 19 C 0.002 3.998 20 N -0.601 5.601 21 H 0.405 0.595 22 C 0.096 3.904 23 H 0.061 0.939 24 H 0.052 0.948 25 H 0.064 0.936 26 H 0.115 0.885 27 H 0.115 0.885 28 H 0.125 0.875 29 H 0.297 0.703 30 H 0.315 0.685 31 H 0.254 0.746 32 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.898 5.563 2.327 14.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.118 4.118 3 C -0.126 4.126 4 C -0.182 4.182 5 C -0.072 4.072 6 C -0.101 4.101 7 C -0.146 4.146 8 C 0.173 3.827 9 H 0.063 0.937 10 N -0.335 5.335 11 C -0.561 4.561 12 H 0.070 0.930 13 C -0.124 4.124 14 N -0.485 5.485 15 Si 0.709 3.291 16 H -0.208 1.208 17 H -0.214 1.214 18 H -0.202 1.202 19 C -0.121 4.121 20 N -0.205 5.205 21 H 0.240 0.760 22 C -0.012 4.012 23 H 0.080 0.920 24 H 0.071 0.929 25 H 0.083 0.917 26 H 0.133 0.867 27 H 0.133 0.867 28 H 0.143 0.857 29 H 0.107 0.893 30 H 0.126 0.874 31 H 0.064 0.936 32 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -11.991 5.394 2.258 13.341 hybrid contribution -1.091 -0.070 -0.972 1.463 sum -13.083 5.325 1.286 14.183 Atomic orbital electron populations 1.20605 0.92113 1.01846 1.01499 1.18708 0.94660 0.90470 1.07960 1.20542 0.94168 0.95822 1.02021 1.20509 0.93805 0.97667 1.06235 1.20426 1.00107 0.90478 0.96161 1.19241 0.91274 0.94072 1.05538 1.22460 0.98635 0.90335 1.03124 1.17591 0.83237 0.85460 0.96450 0.93713 1.59195 1.61170 1.10268 1.02907 1.20842 0.97664 1.44752 0.92858 0.93033 1.24945 0.96900 0.94542 0.95990 1.70106 1.07819 1.40217 1.30369 0.86804 0.78882 0.77519 0.85886 1.20805 1.21358 1.20158 1.21376 0.85194 0.95795 1.09694 1.41558 1.07882 1.03936 1.67135 0.76010 1.18114 0.94056 0.84542 1.04455 0.91982 0.92889 0.91743 0.86694 0.86672 0.85674 0.89267 0.87361 0.93588 0.82460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.19 10.02 36.00 0.36 -0.82 16 2 C -0.12 -1.78 5.89 -104.47 -0.62 -2.39 16 3 C -0.11 -1.59 9.67 -39.54 -0.38 -1.97 16 4 C -0.16 -2.64 9.97 -39.95 -0.40 -3.04 16 5 C -0.05 -1.03 10.05 -39.65 -0.40 -1.43 16 6 C -0.10 -1.98 6.35 -105.14 -0.67 -2.65 16 7 C -0.14 -2.97 5.40 -102.71 -0.55 -3.53 16 8 C 0.28 7.08 3.13 -70.01 -0.22 6.86 16 9 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 10 N -0.81 -18.82 8.23 -6.65 -0.05 -18.88 16 11 C -0.52 -14.54 8.71 -34.44 -0.30 -14.84 16 12 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 13 C 0.08 2.32 5.39 -17.82 -0.10 2.22 16 14 N -0.85 -24.92 12.77 55.43 0.71 -24.22 16 15 Si 0.88 21.68 29.54 -169.99 -5.02 16.66 16 16 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 17 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 19 C 0.00 0.04 11.06 -16.73 -0.19 -0.15 16 20 N -0.60 -9.61 6.07 -10.65 -0.06 -9.67 16 21 H 0.40 4.94 8.88 -40.82 -0.36 4.58 16 22 C 0.10 1.73 6.95 -83.99 -0.58 1.15 16 23 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.05 0.55 8.01 -51.93 -0.42 0.14 16 25 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 26 H 0.12 1.37 8.06 -52.49 -0.42 0.94 16 27 H 0.12 1.57 8.06 -52.48 -0.42 1.14 16 28 H 0.13 2.47 8.06 -52.48 -0.42 2.05 16 29 H 0.30 6.16 9.06 -39.29 -0.36 5.80 16 30 H 0.31 6.87 8.00 -39.29 -0.31 6.56 16 31 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 32 H 0.16 2.49 7.31 -52.49 -0.38 2.11 16 LS Contribution 276.38 15.07 4.16 4.16 Total: -1.00 -31.34 276.38 -8.21 -39.55 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: -3.91 Total: 12.98 kcal Atomic # 6 Polarization: -16.55 SS G_CDS: -4.04 Total: -20.59 kcal Atomic # 7 Polarization: -53.36 SS G_CDS: 0.59 Total: -52.77 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -31.34 -8.21 -39.55 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261292429.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.170 kcal (2) G-P(sol) polarization free energy of solvation -31.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds