Wall clock time and date at job start Mon Mar 30 2020 03:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37791 * 120.10736 * 2 1 4 4 C 1.38791 * 120.66406 * 179.72340 * 3 2 1 5 5 C 1.36662 * 120.52759 * 0.30600 * 4 3 2 6 6 C 1.39585 * 119.76703 * 359.97438 * 5 4 3 7 7 C 1.46482 * 134.03814 * 180.02562 * 6 5 4 8 8 C 1.50699 * 126.50073 * 359.97438 * 7 6 5 9 9 H 1.09001 * 109.47358 * 40.00051 * 8 7 6 10 10 N 1.46904 * 109.47359 * 160.00219 * 8 7 6 11 11 C 1.50699 * 109.47063 * 280.00192 * 8 7 6 12 12 H 1.07998 * 120.00323 * 0.02562 * 11 8 7 13 13 C 1.37882 * 120.00131 * 179.97438 * 11 8 7 14 14 N 1.31515 * 119.99749 * 0.02562 * 13 11 8 15 15 Si 1.86795 * 120.00053 * 180.02562 * 13 11 8 16 16 H 1.48503 * 109.47273 * 90.00055 * 15 13 11 17 17 H 1.48504 * 109.46984 * 210.00111 * 15 13 11 18 18 H 1.48502 * 109.47327 * 329.99800 * 15 13 11 19 19 C 1.34238 * 107.00425 * 179.97438 * 7 6 5 20 20 N 1.36837 * 109.93565 * 0.02562 * 19 7 6 21 21 H 0.96996 * 125.06611 * 179.97438 * 20 19 7 22 22 C 1.37694 * 109.87294 * 359.97438 * 20 19 7 23 23 H 1.08998 * 109.47156 * 89.99576 * 1 2 3 24 24 H 1.09003 * 109.47069 * 209.99416 * 1 2 3 25 25 H 1.08998 * 109.47133 * 329.99893 * 1 2 3 26 26 H 1.08002 * 119.67133 * 0.02562 * 3 2 1 27 27 H 1.08004 * 119.73736 * 180.27825 * 4 3 2 28 28 H 1.08005 * 120.11636 * 180.02562 * 5 4 3 29 29 H 1.00898 * 110.99684 * 296.04785 * 10 8 7 30 30 H 1.00900 * 110.99508 * 60.00071 * 10 8 7 31 31 H 0.97006 * 120.00255 * 180.02562 * 14 13 11 32 32 H 1.07996 * 125.03804 * 180.02562 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1920 0.0000 4 6 3.5860 1.2055 0.0058 5 6 4.2916 0.0351 0.0053 6 6 3.6117 -1.1840 -0.0006 7 6 4.0355 -2.5861 -0.0023 8 6 5.4544 -3.0938 0.0018 9 1 6.0592 -2.4766 0.6661 10 7 5.4753 -4.4853 0.4723 11 6 6.0156 -3.0274 -1.3952 12 1 5.4060 -2.6545 -2.2050 13 6 7.3078 -3.4418 -1.6395 14 7 8.0503 -3.8955 -0.6533 15 14 8.0037 -3.3588 -3.3710 16 1 8.6513 -2.0391 -3.5815 17 1 9.0079 -4.4377 -3.5530 18 1 6.9053 -3.5339 -4.3549 19 6 2.9202 -3.3333 -0.0082 20 7 1.8166 -2.5242 -0.0109 21 1 0.8978 -2.8350 -0.0155 22 6 2.2048 -1.2031 -0.0062 23 1 -0.3633 0.0001 -1.0276 24 1 -0.3633 -0.8901 0.5138 25 1 -0.3633 0.8900 0.5138 26 1 1.6546 2.1252 0.0004 27 1 4.1126 2.1485 0.0102 28 1 5.3715 0.0534 0.0102 29 1 5.1640 -4.5479 1.4300 30 1 4.9213 -5.0781 -0.1275 31 1 8.9596 -4.1867 -0.8250 32 1 2.8972 -4.4130 -0.0104 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261292429.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:37 Heat of formation + Delta-G solvation = 31.436385 kcal Electronic energy + Delta-G solvation = -15493.351742 eV Core-core repulsion = 13031.884155 eV Total energy + Delta-G solvation = -2461.467587 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.09916 -38.02670 -36.40444 -34.03800 -33.26215 -30.60212 -29.29032 -27.93286 -27.53446 -24.15552 -22.82310 -22.53220 -19.66898 -18.63406 -18.41188 -16.97823 -16.51065 -16.21748 -15.86749 -15.40762 -15.09588 -14.57297 -14.25008 -14.21281 -13.90391 -13.52445 -13.17728 -12.90448 -12.69353 -12.59410 -12.27702 -12.19216 -11.88074 -11.64809 -11.32515 -10.53713 -10.09487 -9.02983 -8.88929 -8.33697 -7.90561 -6.14070 0.29159 0.80565 1.42031 1.42464 1.52324 1.92629 2.36756 2.50385 3.06257 3.28356 3.92932 4.04466 4.17614 4.32058 4.43318 4.50700 4.56315 4.78299 4.83142 4.89354 4.97821 5.10337 5.22805 5.33350 5.52851 5.71415 5.78131 5.79619 5.96159 5.97555 6.30599 6.36385 6.72509 6.89186 7.17128 7.34114 7.57717 9.09246 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.032150 B = 0.007697 C = 0.006949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.698580 B = 3637.071664 C = 4028.440209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.108 4.108 3 C -0.108 4.108 4 C -0.152 4.152 5 C -0.096 4.096 6 C -0.132 4.132 7 C -0.190 4.190 8 C 0.295 3.705 9 H -0.003 1.003 10 N -0.818 5.818 11 C -0.533 4.533 12 H 0.036 0.964 13 C 0.035 3.965 14 N -0.882 5.882 15 Si 0.944 3.056 16 H -0.279 1.279 17 H -0.281 1.281 18 H -0.274 1.274 19 C 0.030 3.970 20 N -0.583 5.583 21 H 0.426 0.574 22 C 0.083 3.917 23 H 0.075 0.925 24 H 0.063 0.937 25 H 0.087 0.913 26 H 0.156 0.844 27 H 0.139 0.861 28 H 0.098 0.902 29 H 0.312 0.688 30 H 0.324 0.676 31 H 0.255 0.745 32 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.761 6.313 1.732 17.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.111 4.111 3 C -0.127 4.127 4 C -0.171 4.171 5 C -0.115 4.115 6 C -0.138 4.138 7 C -0.199 4.199 8 C 0.184 3.816 9 H 0.015 0.985 10 N -0.345 5.345 11 C -0.572 4.572 12 H 0.054 0.946 13 C -0.168 4.168 14 N -0.518 5.518 15 Si 0.770 3.230 16 H -0.204 1.204 17 H -0.206 1.206 18 H -0.199 1.199 19 C -0.095 4.095 20 N -0.188 5.188 21 H 0.266 0.734 22 C -0.025 4.025 23 H 0.093 0.907 24 H 0.082 0.918 25 H 0.106 0.894 26 H 0.174 0.826 27 H 0.157 0.843 28 H 0.116 0.884 29 H 0.123 0.877 30 H 0.136 0.864 31 H 0.064 0.936 32 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -14.900 6.153 1.661 16.206 hybrid contribution -0.291 -0.224 -0.740 0.826 sum -15.191 5.929 0.921 16.333 Atomic orbital electron populations 1.20696 0.88662 1.03645 1.02843 1.19269 0.97118 0.89392 1.05283 1.21030 0.93530 0.97483 1.00676 1.20838 0.94948 0.97321 1.03956 1.20440 0.99251 0.91953 0.99864 1.19515 0.93328 0.93936 1.07015 1.22069 0.97799 0.91973 1.08072 1.17055 0.85016 0.85632 0.93894 0.98491 1.58945 1.61964 1.09646 1.03973 1.21084 0.97943 1.44211 0.93917 0.94561 1.25647 0.97212 0.94338 0.99624 1.70228 1.08029 1.41343 1.32222 0.85817 0.78147 0.77624 0.81444 1.20446 1.20649 1.19871 1.21574 0.84861 0.96691 1.06374 1.41446 1.08435 1.03099 1.65820 0.73436 1.18361 0.93021 0.85996 1.05104 0.90661 0.91779 0.89411 0.82637 0.84274 0.88361 0.87715 0.86372 0.93634 0.80060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.83 10.02 71.24 0.71 -1.12 16 2 C -0.11 -2.99 5.89 -19.77 -0.12 -3.10 16 3 C -0.11 -2.89 9.67 22.30 0.22 -2.68 16 4 C -0.15 -4.80 9.97 22.03 0.22 -4.58 16 5 C -0.10 -3.93 10.05 22.23 0.22 -3.71 16 6 C -0.13 -5.66 6.35 -20.20 -0.13 -5.79 16 7 C -0.19 -8.53 5.40 -18.63 -0.10 -8.63 16 8 C 0.29 15.55 3.13 43.42 0.14 15.69 16 9 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 10 N -0.82 -39.10 8.23 -174.95 -1.44 -40.54 16 11 C -0.53 -30.91 8.71 25.60 0.22 -30.68 16 12 H 0.04 2.16 7.74 -2.91 -0.02 2.14 16 13 C 0.03 2.01 5.39 84.66 0.46 2.47 16 14 N -0.88 -53.35 12.77 21.45 0.27 -53.07 16 15 Si 0.94 45.54 29.54 68.60 2.03 47.57 16 16 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 17 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 18 H -0.27 -12.98 7.11 99.48 0.71 -12.27 16 19 C 0.03 1.06 11.06 83.00 0.92 1.98 16 20 N -0.58 -17.36 6.07 -187.60 -1.14 -18.50 16 21 H 0.43 8.93 8.88 -92.71 -0.82 8.11 16 22 C 0.08 2.87 6.95 39.03 0.27 3.14 16 23 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 24 H 0.06 1.03 8.01 -2.39 -0.02 1.01 16 25 H 0.09 1.22 8.09 -2.39 -0.02 1.20 16 26 H 0.16 2.89 8.06 -2.91 -0.02 2.87 16 27 H 0.14 3.58 8.06 -2.91 -0.02 3.56 16 28 H 0.10 4.33 8.06 -2.91 -0.02 4.31 16 29 H 0.31 13.22 9.06 -89.70 -0.81 12.41 16 30 H 0.32 14.27 8.00 -89.69 -0.72 13.55 16 31 H 0.25 14.67 8.31 -92.70 -0.77 13.90 16 32 H 0.18 5.41 7.31 -2.91 -0.02 5.38 16 Total: -1.00 -70.88 276.38 1.56 -69.32 By element: Atomic # 1 Polarization: 33.43 SS G_CDS: -1.19 Total: 32.23 kcal Atomic # 6 Polarization: -40.04 SS G_CDS: 3.03 Total: -37.01 kcal Atomic # 7 Polarization: -109.81 SS G_CDS: -2.31 Total: -112.12 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -70.88 1.56 -69.32 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261292429.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.756 kcal (2) G-P(sol) polarization free energy of solvation -70.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds