Wall clock time and date at job start Mon Mar 30 2020 03:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 120.00262 * 2 1 4 4 H 1.48499 * 109.46843 * 90.00146 * 3 2 1 5 5 H 1.48506 * 109.46984 * 210.00160 * 3 2 1 6 6 H 1.48497 * 109.47033 * 330.00197 * 3 2 1 7 7 C 1.37879 * 119.99462 * 179.72480 * 2 1 3 8 8 H 1.08005 * 120.00096 * 179.63770 * 7 2 1 9 9 C 1.50700 * 120.00391 * 359.64145 * 7 2 1 10 10 H 1.09003 * 109.46992 * 327.83980 * 9 7 2 11 11 C 1.52998 * 109.47447 * 207.83904 * 9 7 2 12 12 N 1.46899 * 109.46959 * 65.27938 * 11 9 7 13 13 C 1.50705 * 109.47050 * 87.83714 * 9 7 2 14 14 C 1.36663 * 120.11522 * 59.72584 * 13 9 7 15 15 C 1.38793 * 120.52343 * 179.76929 * 14 13 9 16 16 C 1.37787 * 120.66757 * 0.50618 * 15 14 13 17 17 C 1.39086 * 119.77923 * 359.75588 * 16 15 14 18 18 N 1.37691 * 133.51289 * 179.97438 * 17 16 15 19 19 H 0.96998 * 125.06604 * 0.02562 * 18 17 16 20 20 C 1.36837 * 109.87378 * 179.97438 * 18 17 16 21 21 C 1.34236 * 109.93519 * 359.97438 * 20 18 17 22 22 C 1.39593 * 120.11724 * 239.99880 * 13 9 7 23 23 H 0.97000 * 120.00088 * 174.55212 * 1 2 3 24 24 H 1.08998 * 109.47558 * 185.28418 * 11 9 7 25 25 H 1.09004 * 109.47131 * 305.28203 * 11 9 7 26 26 H 1.00895 * 110.99634 * 62.48386 * 12 11 9 27 27 H 1.00896 * 110.99981 * 186.43595 * 12 11 9 28 28 H 1.07994 * 119.73747 * 0.02562 * 14 13 9 29 29 H 1.08005 * 119.66445 * 180.28618 * 15 14 13 30 30 H 1.08008 * 120.10830 * 179.72522 * 16 15 14 31 31 H 1.07995 * 125.03303 * 179.97438 * 20 18 17 32 32 H 1.08007 * 126.49902 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0462 1.4001 5 1 3.5468 1.4400 -0.7001 6 1 1.4467 2.6526 -0.7000 7 6 2.0045 -1.1941 0.0057 8 1 3.0845 -1.1943 -0.0002 9 6 1.2510 -2.4991 0.0202 10 1 0.3188 -2.3744 0.5713 11 6 2.1042 -3.5733 0.6977 12 7 2.2958 -3.2262 2.1122 13 6 0.9457 -2.9186 -1.3948 14 6 1.9634 -3.1311 -2.2817 15 6 1.6921 -3.5222 -3.5855 16 6 0.3932 -3.6931 -4.0121 17 6 -0.6584 -3.4771 -3.1278 18 7 -2.0278 -3.5608 -3.2446 19 1 -2.5039 -3.8110 -4.0518 20 6 -2.6169 -3.2397 -2.0521 21 6 -1.6759 -2.9442 -1.1416 22 6 -0.3779 -3.0858 -1.8056 23 1 -0.4850 -0.8362 -0.0798 24 1 1.6002 -4.5370 0.6251 25 1 3.0739 -3.6323 0.2034 26 1 1.4140 -3.2050 2.6019 27 1 2.9409 -3.8623 2.5564 28 1 2.9871 -2.9977 -1.9644 29 1 2.5074 -3.6908 -4.2736 30 1 0.1922 -3.9934 -5.0299 31 1 -3.6814 -3.2261 -1.8703 32 1 -1.8439 -2.6549 -0.1146 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261294253.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:42 Heat of formation + Delta-G solvation = 50.254080 kcal Electronic energy + Delta-G solvation = -15864.284566 eV Core-core repulsion = 13403.632975 eV Total energy + Delta-G solvation = -2460.651591 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.51971 -36.87159 -34.78411 -32.38853 -31.15782 -29.21290 -28.31788 -26.44608 -23.73344 -22.27432 -21.15625 -20.39733 -19.41250 -17.17535 -16.58883 -15.41853 -14.86055 -14.44785 -14.04704 -13.83060 -13.65348 -13.61259 -12.69902 -12.41188 -12.19938 -11.70839 -11.57217 -11.21309 -10.89285 -10.71316 -10.64432 -10.00917 -9.92625 -9.52814 -8.96956 -8.37679 -8.19727 -7.71053 -7.47979 -6.83211 -6.13831 -3.81899 1.93150 2.46963 3.38617 3.55299 3.59018 3.69585 3.74150 4.66605 4.79274 5.30758 5.41068 5.52649 5.65851 5.75003 5.94460 6.01506 6.21391 6.25666 6.31183 6.44998 6.60512 6.73599 6.88476 6.95763 7.23295 7.27486 7.41765 7.53600 7.85253 7.94063 8.04859 8.11472 8.25092 8.40102 8.65659 9.09068 9.85112 11.26244 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.021800 B = 0.010279 C = 0.009492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.124828 B = 2723.276714 C = 2949.056398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.019 3.981 3 Si 1.067 2.933 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.553 4.553 8 H 0.050 0.950 9 C 0.059 3.941 10 H 0.042 0.958 11 C 0.086 3.914 12 N -0.830 5.830 13 C 0.022 3.978 14 C -0.154 4.154 15 C -0.093 4.093 16 C -0.172 4.172 17 C 0.094 3.906 18 N -0.605 5.605 19 H 0.406 0.594 20 C 0.018 3.982 21 C -0.173 4.173 22 C -0.111 4.111 23 H 0.276 0.724 24 H -0.004 1.004 25 H 0.058 0.942 26 H 0.332 0.668 27 H 0.321 0.679 28 H 0.115 0.885 29 H 0.112 0.888 30 H 0.105 0.895 31 H 0.160 0.840 32 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.237 -8.436 -4.344 9.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.185 4.185 3 Si 0.897 3.103 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.215 1.215 7 C -0.590 4.590 8 H 0.069 0.931 9 C 0.040 3.960 10 H 0.060 0.940 11 C -0.045 4.045 12 N -0.358 5.358 13 C 0.020 3.980 14 C -0.173 4.173 15 C -0.112 4.112 16 C -0.193 4.193 17 C -0.012 4.012 18 N -0.209 5.209 19 H 0.241 0.759 20 C -0.106 4.106 21 C -0.199 4.199 22 C -0.116 4.116 23 H 0.088 0.912 24 H 0.014 0.986 25 H 0.076 0.924 26 H 0.144 0.856 27 H 0.132 0.868 28 H 0.133 0.867 29 H 0.130 0.870 30 H 0.123 0.877 31 H 0.178 0.822 32 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -2.235 -6.109 -4.620 7.979 hybrid contribution -0.522 -2.551 -0.422 2.638 sum -2.757 -8.661 -5.042 10.394 Atomic orbital electron populations 1.70692 1.06814 1.31620 1.46215 1.25676 0.96603 1.02287 0.93927 0.83575 0.74652 0.75554 0.76529 1.21617 1.21673 1.21543 1.21643 0.93726 0.90074 1.53604 0.93144 1.18042 0.96475 0.94291 0.87204 0.94039 1.21749 0.99361 0.94622 0.88737 1.58458 1.16271 1.57827 1.03208 1.20072 0.89741 0.88931 0.99257 1.20370 0.99243 1.04685 0.93000 1.20710 0.94824 0.99576 0.96125 1.19666 0.91064 1.10912 0.97699 1.18277 0.83306 1.03422 0.96225 1.41615 1.04627 1.62679 1.12023 0.75929 1.21561 0.97890 1.05811 0.85340 1.21700 0.90753 1.07855 0.99578 1.19146 0.93611 1.06034 0.92763 0.91167 0.98634 0.92374 0.85645 0.86839 0.86665 0.87007 0.87731 0.82226 0.84236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.80 13.59 55.43 0.75 -27.05 16 2 C 0.02 0.56 5.46 -17.82 -0.10 0.46 16 3 Si 1.07 26.26 29.90 -169.99 -5.08 21.18 16 4 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 7 C -0.55 -15.38 7.65 -34.44 -0.26 -15.64 16 8 H 0.05 1.43 7.81 -52.48 -0.41 1.02 16 9 C 0.06 1.46 1.84 -92.92 -0.17 1.29 16 10 H 0.04 1.11 5.83 -51.93 -0.30 0.81 16 11 C 0.09 1.83 5.88 -3.83 -0.02 1.81 16 12 N -0.83 -16.33 9.31 -10.37 -0.10 -16.42 16 13 C 0.02 0.51 4.75 -104.68 -0.50 0.02 16 14 C -0.15 -3.34 8.80 -39.95 -0.35 -3.69 16 15 C -0.09 -1.75 10.01 -39.54 -0.40 -2.15 16 16 C -0.17 -3.15 10.08 -39.43 -0.40 -3.55 16 17 C 0.09 1.86 7.28 -83.99 -0.61 1.25 16 18 N -0.61 -9.76 6.07 -10.65 -0.06 -9.82 16 19 H 0.41 4.90 8.96 -40.82 -0.37 4.54 16 20 C 0.02 0.30 11.81 -16.73 -0.20 0.10 16 21 C -0.17 -3.55 9.56 -37.67 -0.36 -3.91 16 22 C -0.11 -2.50 5.97 -105.14 -0.63 -3.13 16 23 H 0.28 8.14 5.19 -40.82 -0.21 7.93 16 24 H 0.00 -0.09 8.14 -51.93 -0.42 -0.51 16 25 H 0.06 1.23 7.58 -51.93 -0.39 0.84 16 26 H 0.33 6.24 9.06 -39.29 -0.36 5.89 16 27 H 0.32 5.19 9.08 -39.29 -0.36 4.84 16 28 H 0.12 2.45 7.61 -52.49 -0.40 2.05 16 29 H 0.11 1.73 8.06 -52.48 -0.42 1.31 16 30 H 0.10 1.57 8.06 -52.48 -0.42 1.15 16 31 H 0.16 1.96 8.06 -52.49 -0.42 1.53 16 32 H 0.14 2.87 7.52 -52.48 -0.39 2.47 16 LS Contribution 270.23 15.07 4.07 4.07 Total: -1.00 -32.93 270.23 -8.09 -41.02 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: -3.68 Total: 14.15 kcal Atomic # 6 Polarization: -23.14 SS G_CDS: -3.99 Total: -27.13 kcal Atomic # 7 Polarization: -53.89 SS G_CDS: 0.59 Total: -53.30 kcal Atomic # 14 Polarization: 26.26 SS G_CDS: -5.08 Total: 21.18 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -32.93 -8.09 -41.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261294253.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.275 kcal (2) G-P(sol) polarization free energy of solvation -32.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds