Wall clock time and date at job start Mon Mar 30 2020 03:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 120.00262 * 2 1 4 4 H 1.48499 * 109.46843 * 90.00146 * 3 2 1 5 5 H 1.48506 * 109.46984 * 210.00160 * 3 2 1 6 6 H 1.48497 * 109.47033 * 330.00197 * 3 2 1 7 7 C 1.37879 * 119.99462 * 179.72480 * 2 1 3 8 8 H 1.08005 * 120.00096 * 179.63770 * 7 2 1 9 9 C 1.50700 * 120.00391 * 359.64145 * 7 2 1 10 10 H 1.09003 * 109.46992 * 327.83980 * 9 7 2 11 11 C 1.52998 * 109.47447 * 207.83904 * 9 7 2 12 12 N 1.46899 * 109.46959 * 65.27938 * 11 9 7 13 13 C 1.50705 * 109.47050 * 87.83714 * 9 7 2 14 14 C 1.36663 * 120.11522 * 59.72584 * 13 9 7 15 15 C 1.38793 * 120.52343 * 179.76929 * 14 13 9 16 16 C 1.37787 * 120.66757 * 0.50618 * 15 14 13 17 17 C 1.39086 * 119.77923 * 359.75588 * 16 15 14 18 18 N 1.37691 * 133.51289 * 179.97438 * 17 16 15 19 19 H 0.96998 * 125.06604 * 0.02562 * 18 17 16 20 20 C 1.36837 * 109.87378 * 179.97438 * 18 17 16 21 21 C 1.34236 * 109.93519 * 359.97438 * 20 18 17 22 22 C 1.39593 * 120.11724 * 239.99880 * 13 9 7 23 23 H 0.97000 * 120.00088 * 174.55212 * 1 2 3 24 24 H 1.08998 * 109.47558 * 185.28418 * 11 9 7 25 25 H 1.09004 * 109.47131 * 305.28203 * 11 9 7 26 26 H 1.00895 * 110.99634 * 62.48386 * 12 11 9 27 27 H 1.00896 * 110.99981 * 186.43595 * 12 11 9 28 28 H 1.07994 * 119.73747 * 0.02562 * 14 13 9 29 29 H 1.08005 * 119.66445 * 180.28618 * 15 14 13 30 30 H 1.08008 * 120.10830 * 179.72522 * 16 15 14 31 31 H 1.07995 * 125.03303 * 179.97438 * 20 18 17 32 32 H 1.08007 * 126.49902 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0462 1.4001 5 1 3.5468 1.4400 -0.7001 6 1 1.4467 2.6526 -0.7000 7 6 2.0045 -1.1941 0.0057 8 1 3.0845 -1.1943 -0.0002 9 6 1.2510 -2.4991 0.0202 10 1 0.3188 -2.3744 0.5713 11 6 2.1042 -3.5733 0.6977 12 7 2.2958 -3.2262 2.1122 13 6 0.9457 -2.9186 -1.3948 14 6 1.9634 -3.1311 -2.2817 15 6 1.6921 -3.5222 -3.5855 16 6 0.3932 -3.6931 -4.0121 17 6 -0.6584 -3.4771 -3.1278 18 7 -2.0278 -3.5608 -3.2446 19 1 -2.5039 -3.8110 -4.0518 20 6 -2.6169 -3.2397 -2.0521 21 6 -1.6759 -2.9442 -1.1416 22 6 -0.3779 -3.0858 -1.8056 23 1 -0.4850 -0.8362 -0.0798 24 1 1.6002 -4.5370 0.6251 25 1 3.0739 -3.6323 0.2034 26 1 1.4140 -3.2050 2.6019 27 1 2.9409 -3.8623 2.5564 28 1 2.9871 -2.9977 -1.9644 29 1 2.5074 -3.6908 -4.2736 30 1 0.1922 -3.9934 -5.0299 31 1 -3.6814 -3.2261 -1.8703 32 1 -1.8439 -2.6549 -0.1146 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261294253.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:42 Heat of formation + Delta-G solvation = 27.362703 kcal Electronic energy + Delta-G solvation = -15865.277210 eV Core-core repulsion = 13403.632975 eV Total energy + Delta-G solvation = -2461.644235 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.98382 -38.50488 -36.45309 -34.30550 -32.80547 -30.80739 -29.81804 -28.15744 -25.78979 -23.87875 -22.63863 -22.05102 -20.99088 -18.94160 -18.30482 -16.91581 -16.46752 -16.05970 -15.75819 -15.58781 -15.41270 -15.15970 -14.39398 -13.93527 -13.68522 -13.47104 -13.22257 -13.10193 -12.58048 -12.49435 -12.28272 -11.93528 -11.55277 -11.40719 -10.71321 -10.35476 -10.18887 -9.35293 -8.98270 -8.38950 -8.32841 -6.04186 0.43688 0.89151 1.54711 1.64198 1.79992 1.93765 2.38642 2.67119 3.16960 3.39208 3.87125 4.10570 4.16637 4.31944 4.36686 4.51736 4.54562 4.61460 4.80892 4.91067 5.03746 5.11501 5.25376 5.36538 5.47063 5.72981 5.89065 5.96261 6.06945 6.28367 6.41012 6.47467 6.50212 6.78448 6.89623 6.92178 7.70103 9.05680 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.021800 B = 0.010279 C = 0.009492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.124828 B = 2723.276714 C = 2949.056398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.032 4.032 3 Si 1.106 2.894 4 H -0.279 1.279 5 H -0.276 1.276 6 H -0.292 1.292 7 C -0.552 4.552 8 H 0.037 0.963 9 C 0.063 3.937 10 H 0.010 0.990 11 C 0.095 3.905 12 N -0.841 5.841 13 C -0.017 4.017 14 C -0.167 4.167 15 C -0.100 4.100 16 C -0.157 4.157 17 C 0.078 3.922 18 N -0.585 5.585 19 H 0.430 0.570 20 C 0.059 3.941 21 C -0.230 4.230 22 C -0.143 4.143 23 H 0.272 0.728 24 H 0.005 0.995 25 H 0.056 0.944 26 H 0.336 0.664 27 H 0.342 0.658 28 H 0.107 0.893 29 H 0.148 0.852 30 H 0.147 0.853 31 H 0.210 0.790 32 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.722 -9.306 -6.374 11.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.230 4.230 3 Si 0.931 3.069 4 H -0.205 1.205 5 H -0.201 1.201 6 H -0.218 1.218 7 C -0.591 4.591 8 H 0.055 0.945 9 C 0.043 3.957 10 H 0.028 0.972 11 C -0.036 4.036 12 N -0.370 5.370 13 C -0.019 4.019 14 C -0.186 4.186 15 C -0.119 4.119 16 C -0.178 4.178 17 C -0.029 4.029 18 N -0.191 5.191 19 H 0.269 0.731 20 C -0.067 4.067 21 C -0.256 4.256 22 C -0.148 4.148 23 H 0.083 0.917 24 H 0.023 0.977 25 H 0.075 0.925 26 H 0.148 0.852 27 H 0.155 0.845 28 H 0.126 0.874 29 H 0.166 0.834 30 H 0.165 0.835 31 H 0.227 0.773 32 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -2.710 -7.018 -6.667 10.052 hybrid contribution -0.435 -2.400 0.171 2.445 sum -3.146 -9.418 -6.496 11.866 Atomic orbital electron populations 1.70748 1.07634 1.31579 1.48888 1.26847 0.96821 1.05514 0.93858 0.83060 0.74176 0.72474 0.77158 1.20473 1.20125 1.21794 1.21843 0.93122 0.91694 1.52415 0.94460 1.17902 0.94987 0.94161 0.88612 0.97170 1.21559 0.98640 0.94043 0.89347 1.58385 1.17093 1.58824 1.02717 1.19967 0.91241 0.92157 0.98508 1.20488 0.98444 1.05258 0.94430 1.21063 0.96518 0.98952 0.95343 1.20151 0.90226 1.08278 0.99151 1.18517 0.85187 1.03774 0.95470 1.41607 1.03471 1.61150 1.12857 0.73068 1.22171 0.99323 1.01177 0.84070 1.21723 0.91577 1.12170 1.00096 1.19493 0.93797 1.06714 0.94751 0.91695 0.97662 0.92505 0.85250 0.84495 0.87447 0.83413 0.83543 0.77345 0.86184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.64 13.59 21.45 0.29 -59.34 16 2 C -0.03 -1.91 5.46 84.65 0.46 -1.45 16 3 Si 1.11 53.77 29.90 68.60 2.05 55.82 16 4 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 5 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 6 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 7 C -0.55 -31.74 7.65 25.60 0.20 -31.54 16 8 H 0.04 2.18 7.81 -2.91 -0.02 2.15 16 9 C 0.06 3.23 1.84 -12.29 -0.02 3.21 16 10 H 0.01 0.58 5.83 -2.39 -0.01 0.56 16 11 C 0.10 4.16 5.88 86.30 0.51 4.67 16 12 N -0.84 -33.57 9.31 -186.72 -1.74 -35.31 16 13 C -0.02 -0.83 4.75 -19.90 -0.09 -0.92 16 14 C -0.17 -7.27 8.80 22.03 0.19 -7.08 16 15 C -0.10 -3.54 10.01 22.30 0.22 -3.31 16 16 C -0.16 -5.23 10.08 22.37 0.23 -5.01 16 17 C 0.08 2.91 7.28 39.03 0.28 3.19 16 18 N -0.59 -16.86 6.07 -187.61 -1.14 -18.00 16 19 H 0.43 8.34 8.96 -92.71 -0.83 7.51 16 20 C 0.06 1.79 11.81 83.00 0.98 2.77 16 21 C -0.23 -9.57 9.56 23.51 0.22 -9.35 16 22 C -0.14 -6.50 5.97 -20.20 -0.12 -6.62 16 23 H 0.27 16.82 5.19 -92.71 -0.48 16.34 16 24 H 0.01 0.22 8.14 -2.39 -0.02 0.20 16 25 H 0.06 2.47 7.58 -2.38 -0.02 2.45 16 26 H 0.34 12.98 9.06 -89.70 -0.81 12.17 16 27 H 0.34 10.97 9.08 -89.70 -0.81 10.16 16 28 H 0.11 4.67 7.61 -2.91 -0.02 4.65 16 29 H 0.15 4.06 8.06 -2.91 -0.02 4.04 16 30 H 0.15 3.60 8.06 -2.91 -0.02 3.58 16 31 H 0.21 4.19 8.06 -2.91 -0.02 4.16 16 32 H 0.12 5.30 7.52 -2.91 -0.02 5.28 16 Total: -1.00 -74.08 270.23 1.52 -72.56 By element: Atomic # 1 Polarization: 36.72 SS G_CDS: -1.01 Total: 35.71 kcal Atomic # 6 Polarization: -54.51 SS G_CDS: 3.06 Total: -51.45 kcal Atomic # 7 Polarization: -110.07 SS G_CDS: -2.59 Total: -112.65 kcal Atomic # 14 Polarization: 53.77 SS G_CDS: 2.05 Total: 55.82 kcal Total: -74.08 1.52 -72.56 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261294253.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.925 kcal (2) G-P(sol) polarization free energy of solvation -74.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds