Wall clock time and date at job start Mon Mar 30 2020 03:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30115 * 124.94995 * 2 1 4 4 C 1.35776 * 109.64449 * 179.97438 * 3 2 1 5 5 C 1.39746 * 133.60044 * 180.02562 * 4 3 2 6 6 C 1.36606 * 119.88512 * 180.25155 * 5 4 3 7 7 C 1.38776 * 120.66551 * 359.47204 * 6 5 4 8 8 C 1.37850 * 120.45592 * 0.50822 * 7 6 5 9 9 C 1.50698 * 120.15653 * 179.78506 * 8 7 6 10 10 H 1.08999 * 109.46943 * 179.97438 * 9 8 7 11 11 C 1.52996 * 109.47116 * 59.97469 * 9 8 7 12 12 C 1.50706 * 109.47082 * 299.97578 * 9 8 7 13 13 H 1.08002 * 119.99290 * 359.97438 * 12 9 8 14 14 C 1.37868 * 120.00066 * 180.02562 * 12 9 8 15 15 N 1.31510 * 120.00328 * 359.97438 * 14 12 9 16 16 Si 1.86806 * 120.00163 * 179.97438 * 14 12 9 17 17 H 1.48496 * 109.46606 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47076 * 119.99598 * 16 14 12 19 19 H 1.48491 * 109.47349 * 240.00034 * 16 14 12 20 20 C 1.38837 * 119.68698 * 359.75784 * 8 7 6 21 21 N 1.36029 * 124.95362 * 179.97438 * 2 1 3 22 22 H 0.97004 * 126.34554 * 359.97438 * 21 2 1 23 23 H 1.09005 * 109.47056 * 270.02456 * 1 2 3 24 24 H 1.08999 * 109.47332 * 30.02459 * 1 2 3 25 25 H 1.09000 * 109.47197 * 150.02484 * 1 2 3 26 26 H 1.08002 * 120.05286 * 359.96477 * 5 4 3 27 27 H 1.08003 * 119.66098 * 179.69893 * 6 5 4 28 28 H 1.08009 * 119.76920 * 180.26527 * 7 6 5 29 29 H 1.08999 * 109.47181 * 299.99819 * 11 9 8 30 30 H 1.08998 * 109.47369 * 60.00348 * 11 9 8 31 31 H 1.09009 * 109.47338 * 180.02562 * 11 9 8 32 32 H 0.96998 * 120.00665 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2524 1.0665 0.0000 4 6 3.5620 0.7081 0.0006 5 6 4.7586 1.4298 0.0013 6 6 5.9532 0.7671 -0.0035 7 6 5.9930 -0.6201 0.0020 8 6 4.8253 -1.3527 0.0018 9 6 4.8765 -2.8588 0.0029 10 1 3.8618 -3.2568 0.0030 11 6 5.6144 -3.3431 1.2525 12 6 5.6038 -3.3376 -1.2272 13 1 5.9899 -2.6226 -1.9386 14 6 5.7753 -4.6881 -1.4446 15 7 5.3047 -5.5587 -0.5785 16 14 6.6763 -5.2817 -2.9697 17 1 7.1031 -4.1120 -3.7789 18 1 7.8702 -6.0666 -2.5652 19 1 5.7712 -6.1380 -3.7774 20 6 3.6019 -0.6964 0.0012 21 7 2.2863 -1.1149 0.0005 22 1 1.9753 -2.0337 0.0013 23 1 -0.3633 0.0004 1.0277 24 1 -0.3634 0.8897 -0.5142 25 1 -0.3633 -0.8902 -0.5134 26 1 4.7390 2.5096 0.0009 27 1 6.8758 1.3285 -0.0078 28 1 6.9456 -1.1292 0.0025 29 1 6.6291 -2.9451 1.2524 30 1 5.0884 -2.9969 2.1422 31 1 5.6518 -4.4325 1.2531 32 1 5.4257 -6.5089 -0.7313 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261298978.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:01 Heat of formation + Delta-G solvation = 51.034703 kcal Electronic energy + Delta-G solvation = -15570.999386 eV Core-core repulsion = 13110.381645 eV Total energy + Delta-G solvation = -2460.617740 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.59247 -37.18855 -34.48874 -32.43487 -31.05095 -30.81538 -27.87885 -27.08906 -25.20121 -22.42437 -21.72899 -20.57910 -19.41145 -17.18081 -16.55121 -15.96850 -15.03448 -14.83018 -14.53375 -13.83020 -13.07704 -12.93830 -12.86841 -12.57197 -12.48687 -11.66197 -11.39161 -11.21397 -11.11752 -10.96527 -10.74836 -10.49518 -10.20711 -10.06195 -9.83942 -9.17706 -9.01678 -8.46674 -7.71925 -7.25980 -6.09533 -4.16667 1.61800 2.18645 3.23535 3.28604 3.32488 3.37941 3.42026 4.34837 4.48514 4.56875 5.09863 5.21427 5.39454 5.49396 5.59554 5.74252 5.85231 6.07186 6.09057 6.13195 6.40726 6.70793 6.74852 6.88289 7.12567 7.14144 7.19910 7.26228 7.56442 7.63686 7.79278 7.88353 8.00276 8.29111 8.36446 8.86565 9.48802 10.95792 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.027894 B = 0.008102 C = 0.007184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.554376 B = 3455.215798 C = 3896.422653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.264 3.736 3 N -0.503 5.503 4 C 0.041 3.959 5 C -0.101 4.101 6 C -0.120 4.120 7 C -0.111 4.111 8 C -0.021 4.021 9 C 0.076 3.924 10 H 0.023 0.977 11 C -0.132 4.132 12 C -0.507 4.507 13 H 0.060 0.940 14 C 0.062 3.938 15 N -0.891 5.891 16 Si 0.893 3.107 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.284 1.284 20 C 0.048 3.952 21 N -0.591 5.591 22 H 0.422 0.578 23 H 0.083 0.917 24 H 0.091 0.909 25 H 0.077 0.923 26 H 0.116 0.884 27 H 0.119 0.881 28 H 0.129 0.871 29 H 0.032 0.968 30 H 0.007 0.993 31 H 0.086 0.914 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.298 7.548 1.956 9.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.003 4.003 3 N -0.226 5.226 4 C -0.076 4.076 5 C -0.121 4.121 6 C -0.141 4.141 7 C -0.131 4.131 8 C -0.024 4.024 9 C 0.057 3.943 10 H 0.041 0.959 11 C -0.189 4.189 12 C -0.545 4.545 13 H 0.078 0.922 14 C -0.140 4.140 15 N -0.530 5.530 16 Si 0.721 3.279 17 H -0.196 1.196 18 H -0.209 1.209 19 H -0.211 1.211 20 C -0.061 4.061 21 N -0.202 5.202 22 H 0.261 0.739 23 H 0.101 0.899 24 H 0.110 0.890 25 H 0.095 0.905 26 H 0.134 0.866 27 H 0.137 0.863 28 H 0.147 0.853 29 H 0.051 0.949 30 H 0.026 0.974 31 H 0.104 0.896 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.564 8.239 1.980 10.137 hybrid contribution 0.623 -1.740 -0.856 2.037 sum -4.941 6.499 1.124 8.241 Atomic orbital electron populations 1.20278 0.84890 1.04214 1.03694 1.23427 0.95365 0.81574 0.99909 1.70286 1.01248 1.27669 1.23379 1.18992 0.91660 0.90634 1.06355 1.19716 0.89368 0.98727 1.04324 1.20611 0.96817 0.94627 1.02006 1.20777 0.97960 0.92728 1.01664 1.19688 0.88429 0.98409 0.95832 1.17789 0.96921 0.84255 0.95333 0.95878 1.21793 0.98015 1.04269 0.94868 1.21178 1.35993 0.91658 1.05632 0.92173 1.24969 0.95611 0.96793 0.96594 1.69884 1.46092 1.01699 1.35284 0.86509 0.79540 0.78836 0.83046 1.19633 1.20876 1.21062 1.18884 0.85321 0.94586 1.07285 1.42984 1.05235 1.09636 1.62385 0.73862 0.89875 0.89043 0.90451 0.86561 0.86321 0.85341 0.94855 0.97402 0.89584 0.92948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.75 10.51 36.00 0.38 -0.37 16 2 C 0.26 4.31 8.08 -154.83 -1.25 3.05 16 3 N -0.50 -9.63 11.27 -8.24 -0.09 -9.73 16 4 C 0.04 0.84 7.23 -84.70 -0.61 0.23 16 5 C -0.10 -1.85 10.05 -39.61 -0.40 -2.25 16 6 C -0.12 -2.12 9.96 -39.97 -0.40 -2.51 16 7 C -0.11 -2.25 8.71 -39.52 -0.34 -2.59 16 8 C -0.02 -0.47 4.74 -104.54 -0.50 -0.96 16 9 C 0.08 1.85 2.49 -92.92 -0.23 1.62 16 10 H 0.02 0.59 7.37 -51.93 -0.38 0.21 16 11 C -0.13 -3.12 8.78 37.16 0.33 -2.79 16 12 C -0.51 -13.53 8.24 -34.44 -0.28 -13.81 16 13 H 0.06 1.63 7.60 -52.49 -0.40 1.23 16 14 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 15 N -0.89 -24.57 11.32 55.43 0.63 -23.95 16 16 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 17 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 C 0.05 1.01 6.95 -83.99 -0.58 0.43 16 21 N -0.59 -10.54 6.13 -8.00 -0.05 -10.59 16 22 H 0.42 6.72 8.45 -40.82 -0.35 6.37 16 23 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.12 1.84 8.06 -52.49 -0.42 1.42 16 27 H 0.12 1.68 8.06 -52.48 -0.42 1.26 16 28 H 0.13 2.54 7.57 -52.48 -0.40 2.14 16 29 H 0.03 0.75 7.39 -51.93 -0.38 0.36 16 30 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 31 H 0.09 2.22 6.07 -51.92 -0.32 1.91 16 32 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 272.08 15.07 4.10 4.10 Total: -1.00 -30.57 272.08 -8.32 -38.89 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -3.89 Total: 3.82 kcal Atomic # 6 Polarization: -14.42 SS G_CDS: -3.99 Total: -18.41 kcal Atomic # 7 Polarization: -44.75 SS G_CDS: 0.49 Total: -44.26 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -30.57 -8.32 -38.89 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261298978.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.925 kcal (2) G-P(sol) polarization free energy of solvation -30.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds