Wall clock time and date at job start Mon Mar 30 2020 03:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30115 * 124.94995 * 2 1 4 4 C 1.35776 * 109.64449 * 179.97438 * 3 2 1 5 5 C 1.39746 * 133.60044 * 180.02562 * 4 3 2 6 6 C 1.36606 * 119.88512 * 180.25155 * 5 4 3 7 7 C 1.38776 * 120.66551 * 359.47204 * 6 5 4 8 8 C 1.37850 * 120.45592 * 0.50822 * 7 6 5 9 9 C 1.50698 * 120.15653 * 179.78506 * 8 7 6 10 10 H 1.08999 * 109.46943 * 179.97438 * 9 8 7 11 11 C 1.52996 * 109.47116 * 59.97469 * 9 8 7 12 12 C 1.50706 * 109.47082 * 299.97578 * 9 8 7 13 13 H 1.08002 * 119.99290 * 359.97438 * 12 9 8 14 14 C 1.37868 * 120.00066 * 180.02562 * 12 9 8 15 15 N 1.31510 * 120.00328 * 359.97438 * 14 12 9 16 16 Si 1.86806 * 120.00163 * 179.97438 * 14 12 9 17 17 H 1.48496 * 109.46606 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47076 * 119.99598 * 16 14 12 19 19 H 1.48491 * 109.47349 * 240.00034 * 16 14 12 20 20 C 1.38837 * 119.68698 * 359.75784 * 8 7 6 21 21 N 1.36029 * 124.95362 * 179.97438 * 2 1 3 22 22 H 0.97004 * 126.34554 * 359.97438 * 21 2 1 23 23 H 1.09005 * 109.47056 * 270.02456 * 1 2 3 24 24 H 1.08999 * 109.47332 * 30.02459 * 1 2 3 25 25 H 1.09000 * 109.47197 * 150.02484 * 1 2 3 26 26 H 1.08002 * 120.05286 * 359.96477 * 5 4 3 27 27 H 1.08003 * 119.66098 * 179.69893 * 6 5 4 28 28 H 1.08009 * 119.76920 * 180.26527 * 7 6 5 29 29 H 1.08999 * 109.47181 * 299.99819 * 11 9 8 30 30 H 1.08998 * 109.47369 * 60.00348 * 11 9 8 31 31 H 1.09009 * 109.47338 * 180.02562 * 11 9 8 32 32 H 0.96998 * 120.00665 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2524 1.0665 0.0000 4 6 3.5620 0.7081 0.0006 5 6 4.7586 1.4298 0.0013 6 6 5.9532 0.7671 -0.0035 7 6 5.9930 -0.6201 0.0020 8 6 4.8253 -1.3527 0.0018 9 6 4.8765 -2.8588 0.0029 10 1 3.8618 -3.2568 0.0030 11 6 5.6144 -3.3431 1.2525 12 6 5.6038 -3.3376 -1.2272 13 1 5.9899 -2.6226 -1.9386 14 6 5.7753 -4.6881 -1.4446 15 7 5.3047 -5.5587 -0.5785 16 14 6.6763 -5.2817 -2.9697 17 1 7.1031 -4.1120 -3.7789 18 1 7.8702 -6.0666 -2.5652 19 1 5.7712 -6.1380 -3.7774 20 6 3.6019 -0.6964 0.0012 21 7 2.2863 -1.1149 0.0005 22 1 1.9753 -2.0337 0.0013 23 1 -0.3633 0.0004 1.0277 24 1 -0.3634 0.8897 -0.5142 25 1 -0.3633 -0.8902 -0.5134 26 1 4.7390 2.5096 0.0009 27 1 6.8758 1.3285 -0.0078 28 1 6.9456 -1.1292 0.0025 29 1 6.6291 -2.9451 1.2524 30 1 5.0884 -2.9969 2.1422 31 1 5.6518 -4.4325 1.2531 32 1 5.4257 -6.5089 -0.7313 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261298978.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:01 Heat of formation + Delta-G solvation = 33.400966 kcal Electronic energy + Delta-G solvation = -15571.764042 eV Core-core repulsion = 13110.381645 eV Total energy + Delta-G solvation = -2461.382396 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.99790 -38.71409 -36.25332 -34.09225 -32.58243 -32.13636 -29.52394 -28.35953 -27.24491 -24.12357 -23.18971 -21.92097 -21.06447 -18.67240 -18.29394 -17.65213 -16.61666 -16.37170 -16.03648 -15.37202 -14.82688 -14.45511 -14.05361 -13.87474 -13.49507 -13.44878 -13.00909 -12.90100 -12.73666 -12.72215 -12.32026 -12.19781 -12.14538 -11.72402 -11.44898 -10.97040 -10.75187 -10.51301 -9.16545 -8.79059 -8.13202 -6.27589 0.17912 0.70552 1.37841 1.41129 1.52021 1.89666 2.09902 2.40678 3.04390 3.14807 3.29495 3.80370 4.25724 4.28825 4.44502 4.54711 4.58532 4.73376 4.74254 4.85458 4.98727 5.03653 5.07871 5.18174 5.31716 5.49469 5.59754 5.68233 5.70571 5.97897 6.01701 6.12868 6.30879 6.53490 6.80030 6.96127 7.40695 8.90453 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.027894 B = 0.008102 C = 0.007184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.554376 B = 3455.215798 C = 3896.422653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.277 3.723 3 N -0.531 5.531 4 C 0.024 3.976 5 C -0.103 4.103 6 C -0.112 4.112 7 C -0.121 4.121 8 C -0.048 4.048 9 C 0.080 3.920 10 H 0.002 0.998 11 C -0.121 4.121 12 C -0.520 4.520 13 H 0.050 0.950 14 C 0.018 3.982 15 N -0.915 5.915 16 Si 0.952 3.048 17 H -0.271 1.271 18 H -0.277 1.277 19 H -0.281 1.281 20 C 0.020 3.980 21 N -0.594 5.594 22 H 0.428 0.572 23 H 0.105 0.895 24 H 0.104 0.896 25 H 0.099 0.901 26 H 0.142 0.858 27 H 0.158 0.842 28 H 0.126 0.874 29 H 0.036 0.964 30 H 0.019 0.981 31 H 0.062 0.938 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.721 8.690 1.585 10.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.010 3.990 3 N -0.254 5.254 4 C -0.094 4.094 5 C -0.122 4.122 6 C -0.132 4.132 7 C -0.141 4.141 8 C -0.051 4.051 9 C 0.061 3.939 10 H 0.020 0.980 11 C -0.179 4.179 12 C -0.558 4.558 13 H 0.068 0.932 14 C -0.181 4.181 15 N -0.554 5.554 16 Si 0.778 3.222 17 H -0.195 1.195 18 H -0.203 1.203 19 H -0.207 1.207 20 C -0.089 4.089 21 N -0.206 5.206 22 H 0.268 0.732 23 H 0.124 0.876 24 H 0.123 0.877 25 H 0.118 0.882 26 H 0.160 0.840 27 H 0.175 0.825 28 H 0.143 0.857 29 H 0.055 0.945 30 H 0.038 0.962 31 H 0.080 0.920 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.991 9.381 1.613 11.247 hybrid contribution 0.673 -2.047 -0.716 2.271 sum -5.318 7.334 0.896 9.104 Atomic orbital electron populations 1.20572 0.80653 1.05972 1.05661 1.24554 0.97424 0.80385 0.96595 1.70336 1.00908 1.28726 1.25386 1.19460 0.92930 0.90603 1.06405 1.20118 0.88894 1.00085 1.03137 1.20922 0.98299 0.93533 1.00408 1.20908 0.97201 0.94117 1.01840 1.19546 0.89931 0.97024 0.98555 1.17615 0.95275 0.86284 0.94696 0.98036 1.21640 0.98399 1.02532 0.95344 1.21394 1.36244 0.91802 1.06381 0.93171 1.25664 0.96350 0.96943 0.99161 1.69993 1.46904 1.01898 1.36625 0.85588 0.78530 0.78227 0.79852 1.19505 1.20257 1.20722 1.19032 0.86077 0.95283 1.08493 1.43108 1.04609 1.10453 1.62477 0.73246 0.87615 0.87724 0.88193 0.83988 0.82484 0.85650 0.94456 0.96214 0.91951 0.92831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.26 10.51 71.24 0.75 -0.51 16 2 C 0.28 8.62 8.08 137.92 1.11 9.73 16 3 N -0.53 -19.62 11.27 -179.97 -2.03 -21.65 16 4 C 0.02 0.94 7.23 39.45 0.29 1.23 16 5 C -0.10 -3.57 10.05 22.25 0.22 -3.34 16 6 C -0.11 -3.72 9.96 22.02 0.22 -3.50 16 7 C -0.12 -4.84 8.71 22.31 0.19 -4.64 16 8 C -0.05 -2.14 4.74 -19.81 -0.09 -2.24 16 9 C 0.08 4.00 2.49 -12.29 -0.03 3.97 16 10 H 0.00 0.08 7.37 -2.39 -0.02 0.06 16 11 C -0.12 -5.87 8.78 71.98 0.63 -5.24 16 12 C -0.52 -28.27 8.24 25.60 0.21 -28.06 16 13 H 0.05 2.76 7.60 -2.91 -0.02 2.74 16 14 C 0.02 0.96 5.30 84.65 0.45 1.41 16 15 N -0.91 -51.19 11.32 21.44 0.24 -50.95 16 16 Si 0.95 43.00 29.54 68.60 2.03 45.03 16 17 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 18 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 19 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 20 C 0.02 0.86 6.95 38.86 0.27 1.13 16 21 N -0.59 -21.03 6.13 -179.23 -1.10 -22.13 16 22 H 0.43 13.68 8.45 -92.71 -0.78 12.90 16 23 H 0.11 1.49 8.14 -2.38 -0.02 1.48 16 24 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 25 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.14 4.11 8.06 -2.91 -0.02 4.08 16 27 H 0.16 3.92 8.06 -2.91 -0.02 3.90 16 28 H 0.13 4.96 7.57 -2.91 -0.02 4.94 16 29 H 0.04 1.71 7.39 -2.39 -0.02 1.69 16 30 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.06 3.30 6.07 -2.38 -0.01 3.28 16 32 H 0.26 13.94 8.31 -92.71 -0.77 13.17 16 Total: -1.00 -66.03 272.08 3.71 -62.31 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: 0.35 Total: 17.45 kcal Atomic # 6 Polarization: -34.28 SS G_CDS: 4.22 Total: -30.06 kcal Atomic # 7 Polarization: -91.85 SS G_CDS: -2.88 Total: -94.73 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -66.03 3.71 -62.31 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261298978.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.714 kcal (2) G-P(sol) polarization free energy of solvation -66.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds