Wall clock time and date at job start Mon Mar 30 2020 03:26:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30110 * 124.95422 * 2 1 4 4 C 1.35787 * 109.64483 * 180.02562 * 3 2 1 5 5 C 1.39735 * 133.60090 * 179.97438 * 4 3 2 6 6 C 1.36603 * 119.88474 * 179.72469 * 5 4 3 7 7 C 1.38783 * 120.66827 * 0.28758 * 6 5 4 8 8 C 1.37847 * 120.45027 * 359.96769 * 7 6 5 9 9 C 1.50702 * 120.15170 * 180.02562 * 8 7 6 10 10 H 1.09001 * 109.46730 * 180.02562 * 9 8 7 11 11 C 1.52995 * 109.47769 * 300.00624 * 9 8 7 12 12 C 1.50705 * 109.46992 * 60.01044 * 9 8 7 13 13 H 1.08001 * 119.99701 * 359.97438 * 12 9 8 14 14 C 1.37877 * 119.99796 * 180.02562 * 12 9 8 15 15 N 1.31511 * 120.00261 * 359.97438 * 14 12 9 16 16 Si 1.86802 * 119.99659 * 180.02562 * 14 12 9 17 17 H 1.48495 * 109.47698 * 89.99365 * 16 14 12 18 18 H 1.48499 * 109.46972 * 209.99584 * 16 14 12 19 19 H 1.48507 * 109.46906 * 329.99200 * 16 14 12 20 20 C 1.38834 * 119.69200 * 0.03175 * 8 7 6 21 21 N 1.36051 * 124.94724 * 180.61821 * 2 1 3 22 22 H 0.97004 * 126.34652 * 359.39556 * 21 2 1 23 23 H 1.09004 * 109.47153 * 89.97471 * 1 2 3 24 24 H 1.08995 * 109.47700 * 209.97846 * 1 2 3 25 25 H 1.09000 * 109.46891 * 329.98053 * 1 2 3 26 26 H 1.08002 * 120.06112 * 0.02562 * 5 4 3 27 27 H 1.08002 * 119.67091 * 180.25918 * 6 5 4 28 28 H 1.08003 * 119.77014 * 180.02562 * 7 6 5 29 29 H 1.09004 * 109.47231 * 300.00158 * 11 9 8 30 30 H 1.09004 * 109.47128 * 59.99474 * 11 9 8 31 31 H 1.08991 * 109.47653 * 180.02562 * 11 9 8 32 32 H 0.97001 * 120.00022 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2524 1.0664 0.0000 4 6 3.5621 0.7079 -0.0006 5 6 4.7587 1.4294 -0.0013 6 6 5.9532 0.7667 0.0040 7 6 5.9930 -0.6206 0.0040 8 6 4.8252 -1.3530 -0.0006 9 6 4.8762 -2.8591 0.0001 10 1 3.8614 -3.2570 -0.0044 11 6 5.6196 -3.3449 -1.2458 12 6 5.5980 -3.3367 1.2338 13 1 5.9817 -2.6211 1.9459 14 6 5.7693 -4.6872 1.4529 15 7 5.3025 -5.5585 0.5855 16 14 6.6634 -5.2792 2.9825 17 1 5.6853 -5.4775 4.0821 18 1 7.3468 -6.5647 2.6900 19 1 7.6690 -4.2658 3.3914 20 6 3.6018 -0.6966 -0.0059 21 7 2.2863 -1.1151 -0.0120 22 1 1.9752 -2.0339 -0.0137 23 1 -0.3634 0.0005 -1.0277 24 1 -0.3634 -0.8901 0.5135 25 1 -0.3633 0.8898 0.5141 26 1 4.7393 2.5093 -0.0010 27 1 6.8760 1.3278 0.0076 28 1 6.9454 -1.1298 0.0086 29 1 5.0975 -2.9995 -2.1382 30 1 6.6343 -2.9469 -1.2417 31 1 5.6561 -4.4342 -1.2456 32 1 5.4234 -6.5086 0.7394 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261298980.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:03 Heat of formation + Delta-G solvation = 51.047425 kcal Electronic energy + Delta-G solvation = -15571.073371 eV Core-core repulsion = 13110.456183 eV Total energy + Delta-G solvation = -2460.617189 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.59080 -37.18795 -34.48787 -32.43441 -31.05074 -30.81407 -27.87892 -27.08893 -25.19893 -22.42345 -21.72864 -20.57785 -19.41076 -17.18028 -16.54952 -15.96656 -15.03375 -14.82979 -14.53588 -13.82863 -13.07928 -12.93267 -12.87212 -12.56978 -12.48377 -11.65899 -11.39262 -11.21532 -11.11330 -10.95078 -10.76170 -10.50812 -10.20106 -10.06367 -9.83573 -9.17685 -9.02730 -8.46107 -7.71868 -7.26023 -6.09366 -4.16530 1.61822 2.18597 3.24800 3.28472 3.32086 3.36905 3.42110 4.34841 4.48485 4.56925 5.09931 5.21530 5.39557 5.49378 5.59556 5.74331 5.85272 6.07224 6.09047 6.13198 6.40799 6.70830 6.74936 6.88317 7.12683 7.14194 7.19959 7.26293 7.56477 7.63626 7.79359 7.88411 8.00329 8.29195 8.36438 8.86366 9.48817 10.95925 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.027862 B = 0.008105 C = 0.007188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.716965 B = 3453.765404 C = 3894.466947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.264 3.736 3 N -0.503 5.503 4 C 0.041 3.959 5 C -0.101 4.101 6 C -0.121 4.121 7 C -0.111 4.111 8 C -0.021 4.021 9 C 0.076 3.924 10 H 0.023 0.977 11 C -0.132 4.132 12 C -0.507 4.507 13 H 0.059 0.941 14 C 0.062 3.938 15 N -0.891 5.891 16 Si 0.894 3.106 17 H -0.281 1.281 18 H -0.286 1.286 19 H -0.272 1.272 20 C 0.048 3.952 21 N -0.591 5.591 22 H 0.422 0.578 23 H 0.083 0.917 24 H 0.077 0.923 25 H 0.091 0.909 26 H 0.116 0.884 27 H 0.119 0.881 28 H 0.129 0.871 29 H 0.007 0.993 30 H 0.032 0.968 31 H 0.086 0.914 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.287 7.531 -1.966 9.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.003 4.003 3 N -0.226 5.226 4 C -0.076 4.076 5 C -0.121 4.121 6 C -0.141 4.141 7 C -0.131 4.131 8 C -0.024 4.024 9 C 0.057 3.943 10 H 0.041 0.959 11 C -0.189 4.189 12 C -0.545 4.545 13 H 0.078 0.922 14 C -0.139 4.139 15 N -0.530 5.530 16 Si 0.721 3.279 17 H -0.207 1.207 18 H -0.211 1.211 19 H -0.197 1.197 20 C -0.061 4.061 21 N -0.203 5.203 22 H 0.261 0.739 23 H 0.101 0.899 24 H 0.096 0.904 25 H 0.110 0.890 26 H 0.134 0.866 27 H 0.137 0.863 28 H 0.147 0.853 29 H 0.026 0.974 30 H 0.051 0.949 31 H 0.104 0.896 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.549 8.218 -2.004 10.117 hybrid contribution 0.614 -1.728 0.870 2.029 sum -4.935 6.490 -1.134 8.232 Atomic orbital electron populations 1.20278 0.84891 1.04221 1.03690 1.23433 0.95365 0.81573 0.99897 1.70288 1.01246 1.27668 1.23374 1.18993 0.91658 0.90633 1.06359 1.19711 0.89368 0.98728 1.04321 1.20612 0.96817 0.94626 1.02014 1.20779 0.97964 0.92728 1.01650 1.19688 0.88431 0.98414 0.95837 1.17783 0.96898 0.84249 0.95333 0.95888 1.21793 0.98022 1.04269 0.94858 1.21139 1.36319 0.91651 1.05434 0.92230 1.24969 0.95603 0.96781 0.96590 1.69878 1.46151 1.01721 1.35203 0.86560 0.79953 0.78236 0.83124 1.20736 1.21147 1.19716 1.18881 0.85326 0.94587 1.07273 1.42990 1.05232 1.09638 1.62394 0.73863 0.89882 0.90446 0.89036 0.86561 0.86325 0.85341 0.97410 0.94851 0.89583 0.92893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.75 10.51 36.00 0.38 -0.38 16 2 C 0.26 4.31 8.08 -154.81 -1.25 3.06 16 3 N -0.50 -9.63 11.27 -8.23 -0.09 -9.73 16 4 C 0.04 0.84 7.23 -84.70 -0.61 0.23 16 5 C -0.10 -1.85 10.05 -39.61 -0.40 -2.25 16 6 C -0.12 -2.12 9.96 -39.97 -0.40 -2.52 16 7 C -0.11 -2.25 8.71 -39.52 -0.34 -2.59 16 8 C -0.02 -0.47 4.74 -104.54 -0.50 -0.96 16 9 C 0.08 1.86 2.49 -92.92 -0.23 1.62 16 10 H 0.02 0.59 7.37 -51.93 -0.38 0.21 16 11 C -0.13 -3.12 8.78 37.15 0.33 -2.79 16 12 C -0.51 -13.55 8.24 -34.44 -0.28 -13.84 16 13 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 14 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 15 N -0.89 -24.58 11.32 55.43 0.63 -23.95 16 16 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 16 17 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 20 C 0.05 1.01 6.95 -83.99 -0.58 0.43 16 21 N -0.59 -10.54 6.13 -8.00 -0.05 -10.59 16 22 H 0.42 6.72 8.45 -40.82 -0.35 6.37 16 23 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.12 1.84 8.06 -52.49 -0.42 1.42 16 27 H 0.12 1.68 8.06 -52.49 -0.42 1.26 16 28 H 0.13 2.55 7.57 -52.48 -0.40 2.15 16 29 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 30 H 0.03 0.75 7.39 -51.93 -0.38 0.36 16 31 H 0.09 2.22 6.07 -51.93 -0.32 1.91 16 32 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 272.08 15.07 4.10 4.10 Total: -1.00 -30.54 272.08 -8.32 -38.86 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -3.89 Total: 3.85 kcal Atomic # 6 Polarization: -14.43 SS G_CDS: -3.99 Total: -18.42 kcal Atomic # 7 Polarization: -44.76 SS G_CDS: 0.49 Total: -44.27 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -30.54 -8.32 -38.86 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261298980.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.904 kcal (2) G-P(sol) polarization free energy of solvation -30.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds