Wall clock time and date at job start Mon Mar 30 2020 03:26:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30110 * 124.95422 * 2 1 4 4 C 1.35787 * 109.64483 * 180.02562 * 3 2 1 5 5 C 1.39735 * 133.60090 * 179.97438 * 4 3 2 6 6 C 1.36603 * 119.88474 * 179.72469 * 5 4 3 7 7 C 1.38783 * 120.66827 * 0.28758 * 6 5 4 8 8 C 1.37847 * 120.45027 * 359.96769 * 7 6 5 9 9 C 1.50702 * 120.15170 * 180.02562 * 8 7 6 10 10 H 1.09001 * 109.46730 * 180.02562 * 9 8 7 11 11 C 1.52995 * 109.47769 * 300.00624 * 9 8 7 12 12 C 1.50705 * 109.46992 * 60.01044 * 9 8 7 13 13 H 1.08001 * 119.99701 * 359.97438 * 12 9 8 14 14 C 1.37877 * 119.99796 * 180.02562 * 12 9 8 15 15 N 1.31511 * 120.00261 * 359.97438 * 14 12 9 16 16 Si 1.86802 * 119.99659 * 180.02562 * 14 12 9 17 17 H 1.48495 * 109.47698 * 89.99365 * 16 14 12 18 18 H 1.48499 * 109.46972 * 209.99584 * 16 14 12 19 19 H 1.48507 * 109.46906 * 329.99200 * 16 14 12 20 20 C 1.38834 * 119.69200 * 0.03175 * 8 7 6 21 21 N 1.36051 * 124.94724 * 180.61821 * 2 1 3 22 22 H 0.97004 * 126.34652 * 359.39556 * 21 2 1 23 23 H 1.09004 * 109.47153 * 89.97471 * 1 2 3 24 24 H 1.08995 * 109.47700 * 209.97846 * 1 2 3 25 25 H 1.09000 * 109.46891 * 329.98053 * 1 2 3 26 26 H 1.08002 * 120.06112 * 0.02562 * 5 4 3 27 27 H 1.08002 * 119.67091 * 180.25918 * 6 5 4 28 28 H 1.08003 * 119.77014 * 180.02562 * 7 6 5 29 29 H 1.09004 * 109.47231 * 300.00158 * 11 9 8 30 30 H 1.09004 * 109.47128 * 59.99474 * 11 9 8 31 31 H 1.08991 * 109.47653 * 180.02562 * 11 9 8 32 32 H 0.97001 * 120.00022 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2524 1.0664 0.0000 4 6 3.5621 0.7079 -0.0006 5 6 4.7587 1.4294 -0.0013 6 6 5.9532 0.7667 0.0040 7 6 5.9930 -0.6206 0.0040 8 6 4.8252 -1.3530 -0.0006 9 6 4.8762 -2.8591 0.0001 10 1 3.8614 -3.2570 -0.0044 11 6 5.6196 -3.3449 -1.2458 12 6 5.5980 -3.3367 1.2338 13 1 5.9817 -2.6211 1.9459 14 6 5.7693 -4.6872 1.4529 15 7 5.3025 -5.5585 0.5855 16 14 6.6634 -5.2792 2.9825 17 1 5.6853 -5.4775 4.0821 18 1 7.3468 -6.5647 2.6900 19 1 7.6690 -4.2658 3.3914 20 6 3.6018 -0.6966 -0.0059 21 7 2.2863 -1.1151 -0.0120 22 1 1.9752 -2.0339 -0.0137 23 1 -0.3634 0.0005 -1.0277 24 1 -0.3634 -0.8901 0.5135 25 1 -0.3633 0.8898 0.5141 26 1 4.7393 2.5093 -0.0010 27 1 6.8760 1.3278 0.0076 28 1 6.9454 -1.1298 0.0086 29 1 5.0975 -2.9995 -2.1382 30 1 6.6343 -2.9469 -1.2417 31 1 5.6561 -4.4342 -1.2456 32 1 5.4234 -6.5086 0.7394 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261298980.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:03 Heat of formation + Delta-G solvation = 33.445759 kcal Electronic energy + Delta-G solvation = -15571.836637 eV Core-core repulsion = 13110.456183 eV Total energy + Delta-G solvation = -2461.380454 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.99665 -38.71387 -36.25265 -34.09196 -32.58205 -32.13602 -29.52449 -28.35992 -27.24256 -24.12298 -23.18979 -21.92012 -21.06416 -18.67169 -18.29161 -17.65083 -16.61713 -16.37190 -16.03715 -15.37098 -14.82579 -14.45132 -14.05686 -13.87294 -13.49088 -13.44867 -13.00826 -12.90178 -12.73553 -12.72279 -12.33124 -12.19845 -12.13488 -11.72241 -11.45105 -10.97934 -10.75198 -10.50856 -9.16509 -8.79131 -8.13065 -6.27477 0.17901 0.70476 1.38962 1.41131 1.50956 1.89590 2.09941 2.40732 3.04388 3.14933 3.29452 3.80344 4.25724 4.28827 4.44541 4.54713 4.58500 4.73215 4.74319 4.85447 4.98722 5.03633 5.07859 5.18222 5.31710 5.49416 5.59713 5.68223 5.70520 5.97866 6.01764 6.12840 6.30914 6.53445 6.79881 6.96071 7.40687 8.90412 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.027862 B = 0.008105 C = 0.007188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.716965 B = 3453.765404 C = 3894.466947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.277 3.723 3 N -0.530 5.530 4 C 0.024 3.976 5 C -0.103 4.103 6 C -0.112 4.112 7 C -0.121 4.121 8 C -0.048 4.048 9 C 0.080 3.920 10 H 0.001 0.999 11 C -0.121 4.121 12 C -0.521 4.521 13 H 0.050 0.950 14 C 0.018 3.982 15 N -0.915 5.915 16 Si 0.952 3.048 17 H -0.279 1.279 18 H -0.281 1.281 19 H -0.269 1.269 20 C 0.021 3.979 21 N -0.595 5.595 22 H 0.428 0.572 23 H 0.105 0.895 24 H 0.099 0.901 25 H 0.104 0.896 26 H 0.142 0.858 27 H 0.158 0.842 28 H 0.125 0.875 29 H 0.019 0.981 30 H 0.036 0.964 31 H 0.062 0.938 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.708 8.698 -1.581 10.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.010 3.990 3 N -0.253 5.253 4 C -0.094 4.094 5 C -0.122 4.122 6 C -0.132 4.132 7 C -0.141 4.141 8 C -0.051 4.051 9 C 0.062 3.938 10 H 0.019 0.981 11 C -0.179 4.179 12 C -0.559 4.559 13 H 0.068 0.932 14 C -0.181 4.181 15 N -0.554 5.554 16 Si 0.778 3.222 17 H -0.205 1.205 18 H -0.206 1.206 19 H -0.193 1.193 20 C -0.089 4.089 21 N -0.207 5.207 22 H 0.268 0.732 23 H 0.124 0.876 24 H 0.118 0.882 25 H 0.123 0.877 26 H 0.160 0.840 27 H 0.175 0.825 28 H 0.143 0.857 29 H 0.038 0.962 30 H 0.055 0.945 31 H 0.081 0.919 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.975 9.386 -1.622 11.244 hybrid contribution 0.662 -2.041 0.725 2.265 sum -5.313 7.344 -0.897 9.109 Atomic orbital electron populations 1.20571 0.80656 1.05978 1.05656 1.24559 0.97423 0.80384 0.96590 1.70337 1.00907 1.28724 1.25376 1.19460 0.92928 0.90599 1.06408 1.20114 0.88890 1.00087 1.03127 1.20922 0.98299 0.93528 1.00415 1.20907 0.97195 0.94119 1.01837 1.19544 0.89931 0.97023 0.98557 1.17611 0.95255 0.86282 0.94695 0.98054 1.21639 0.98399 1.02534 0.95340 1.21369 1.36555 0.91808 1.06202 0.93152 1.25666 0.96329 0.96929 0.99176 1.69989 1.46967 1.01886 1.36554 0.85644 0.78903 0.77813 0.79875 1.20477 1.20609 1.19315 1.19030 0.86079 0.95284 1.08480 1.43114 1.04609 1.10454 1.62483 0.73249 0.87624 0.88193 0.87716 0.83984 0.82490 0.85675 0.96226 0.94458 0.91948 0.92827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.26 10.51 71.23 0.75 -0.51 16 2 C 0.28 8.62 8.08 137.92 1.11 9.73 16 3 N -0.53 -19.61 11.27 -179.96 -2.03 -21.64 16 4 C 0.02 0.94 7.23 39.45 0.29 1.23 16 5 C -0.10 -3.56 10.05 22.25 0.22 -3.33 16 6 C -0.11 -3.72 9.96 22.02 0.22 -3.50 16 7 C -0.12 -4.83 8.71 22.31 0.19 -4.64 16 8 C -0.05 -2.14 4.74 -19.81 -0.09 -2.24 16 9 C 0.08 4.01 2.49 -12.29 -0.03 3.98 16 10 H 0.00 0.07 7.37 -2.39 -0.02 0.05 16 11 C -0.12 -5.87 8.78 71.98 0.63 -5.24 16 12 C -0.52 -28.33 8.24 25.60 0.21 -28.12 16 13 H 0.05 2.76 7.60 -2.91 -0.02 2.74 16 14 C 0.02 0.97 5.30 84.66 0.45 1.42 16 15 N -0.91 -51.22 11.32 21.45 0.24 -50.98 16 16 Si 0.95 42.98 29.54 68.60 2.03 45.01 16 17 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 18 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 19 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 20 C 0.02 0.86 6.95 38.86 0.27 1.14 16 21 N -0.59 -21.04 6.13 -179.22 -1.10 -22.14 16 22 H 0.43 13.69 8.45 -92.71 -0.78 12.90 16 23 H 0.11 1.50 8.14 -2.38 -0.02 1.48 16 24 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.14 4.11 8.06 -2.91 -0.02 4.08 16 27 H 0.16 3.92 8.06 -2.91 -0.02 3.90 16 28 H 0.13 4.96 7.57 -2.91 -0.02 4.94 16 29 H 0.02 0.85 8.14 -2.38 -0.02 0.83 16 30 H 0.04 1.71 7.39 -2.38 -0.02 1.69 16 31 H 0.06 3.30 6.07 -2.39 -0.01 3.28 16 32 H 0.26 13.99 8.31 -92.71 -0.77 13.22 16 Total: -1.00 -65.95 272.08 3.71 -62.24 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: 0.35 Total: 17.59 kcal Atomic # 6 Polarization: -34.30 SS G_CDS: 4.22 Total: -30.08 kcal Atomic # 7 Polarization: -91.87 SS G_CDS: -2.88 Total: -94.76 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Total: -65.95 3.71 -62.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261298980.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.688 kcal (2) G-P(sol) polarization free energy of solvation -65.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds