Wall clock time and date at job start Mon Mar 30 2020 03:11:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38966 * 119.68561 * 2 1 4 4 C 1.36592 * 120.81800 * 180.02562 * 3 2 1 5 5 C 1.39289 * 119.84743 * 359.96060 * 4 3 2 6 6 C 1.40811 * 119.41905 * 0.03925 * 5 4 3 7 7 C 1.36459 * 119.68901 * 180.02562 * 2 1 3 8 8 C 1.45934 * 106.31832 * 179.97438 * 6 5 4 9 9 C 1.50703 * 126.10616 * 179.97438 * 8 6 5 10 10 C 1.50699 * 109.46987 * 89.99661 * 9 8 6 11 11 H 1.07999 * 120.00202 * 0.02562 * 10 9 8 12 12 C 1.37882 * 119.99483 * 179.97438 * 10 9 8 13 13 N 1.31516 * 120.00179 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 119.99797 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47033 * 89.99941 * 14 12 10 16 16 H 1.48500 * 109.47249 * 209.99949 * 14 12 10 17 17 H 1.48504 * 109.47023 * 330.00006 * 14 12 10 18 18 N 1.30240 * 107.78523 * 359.97438 * 8 6 5 19 19 N 1.37045 * 133.84777 * 180.02562 * 5 4 3 20 20 C 1.46503 * 125.46033 * 359.75108 * 19 5 4 21 21 H 1.09005 * 109.47041 * 269.97678 * 1 2 3 22 22 H 1.09004 * 109.47230 * 29.97303 * 1 2 3 23 23 H 1.09000 * 109.47421 * 149.97882 * 1 2 3 24 24 H 1.08004 * 119.59640 * 0.02562 * 3 2 1 25 25 H 1.07993 * 120.07784 * 180.02562 * 4 3 2 26 26 H 1.08004 * 120.18133 * 359.97438 * 7 2 1 27 27 H 1.09000 * 109.46669 * 210.00292 * 9 8 6 28 28 H 1.08999 * 109.46894 * 329.99399 * 9 8 6 29 29 H 0.97004 * 119.99948 * 179.97438 * 13 12 10 30 30 H 1.09005 * 109.46564 * 90.00287 * 20 19 5 31 31 H 1.09002 * 109.46914 * 210.00047 * 20 19 5 32 32 H 1.08992 * 109.47351 * 330.00995 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1952 1.2073 0.0000 4 6 3.5608 1.2343 -0.0005 5 6 4.2778 0.0401 -0.0002 6 6 3.5823 -1.1843 -0.0002 7 6 2.1829 -1.1855 -0.0005 8 6 4.5975 -2.2326 -0.0005 9 6 4.3406 -3.7176 -0.0001 10 6 4.2542 -4.2128 -1.4208 11 1 4.3738 -3.5215 -2.2419 12 6 4.0236 -5.5487 -1.6723 13 7 3.8785 -6.3906 -0.6724 14 14 3.9172 -6.1628 -3.4332 15 1 5.2687 -6.5637 -3.9002 16 1 3.0048 -7.3328 -3.4952 17 1 3.3935 -5.0800 -4.3042 18 7 5.7651 -1.6556 -0.0012 19 7 5.6138 -0.2651 -0.0002 20 6 6.7082 0.7089 -0.0056 21 1 -0.3633 -0.0004 1.0277 22 1 -0.3634 0.8902 -0.5134 23 1 -0.3634 -0.8898 -0.5141 24 1 1.6435 2.1358 0.0004 25 1 4.0835 2.1793 -0.0001 26 1 1.6407 -2.1196 -0.0005 27 1 5.1559 -4.2271 0.5135 28 1 3.4021 -3.9238 0.5143 29 1 3.7158 -7.3304 -0.8493 30 1 6.9805 0.9550 1.0208 31 1 7.5708 0.2833 -0.5183 32 1 6.3874 1.6130 -0.5229 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261301156.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:30 Heat of formation + Delta-G solvation = 71.989814 kcal Electronic energy + Delta-G solvation = -15284.786904 eV Core-core repulsion = 12825.077846 eV Total energy + Delta-G solvation = -2459.709058 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.66346 -37.16359 -34.01215 -32.46418 -31.50170 -29.66461 -28.88992 -26.77346 -24.88431 -22.93100 -22.42693 -20.61679 -18.90490 -16.46047 -16.23593 -16.04583 -14.95383 -14.80559 -14.51690 -13.65529 -13.51687 -13.38950 -12.65275 -12.62881 -12.33763 -12.03818 -11.83584 -11.55245 -11.31528 -10.97248 -10.75992 -10.67659 -10.56005 -10.02157 -9.69472 -9.57418 -9.02823 -8.42606 -8.08536 -7.18251 -6.05291 -4.08482 1.47624 1.92826 2.98766 3.24959 3.32217 3.38312 3.44039 4.22678 4.46371 4.92111 4.95736 5.21178 5.23887 5.31385 5.41403 5.48554 5.59057 5.74187 5.75290 5.84628 5.88155 6.06249 6.29811 6.33401 6.47999 6.70764 7.01104 7.21239 7.31133 7.50909 7.51927 7.61611 7.90195 8.26183 8.49749 8.93900 9.54623 11.04865 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.022957 B = 0.008153 C = 0.006634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.354261 B = 3433.418778 C = 4219.653847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.149 4.149 3 C -0.073 4.073 4 C -0.152 4.152 5 C 0.120 3.880 6 C -0.168 4.168 7 C -0.020 4.020 8 C 0.152 3.848 9 C 0.089 3.911 10 C -0.509 4.509 11 H 0.057 0.943 12 C 0.061 3.939 13 N -0.893 5.893 14 Si 0.898 3.102 15 H -0.280 1.280 16 H -0.285 1.285 17 H -0.273 1.273 18 N -0.276 5.276 19 N -0.428 5.428 20 C 0.119 3.881 21 H 0.061 0.939 22 H 0.058 0.942 23 H 0.064 0.936 24 H 0.120 0.880 25 H 0.115 0.885 26 H 0.130 0.870 27 H 0.041 0.959 28 H 0.044 0.956 29 H 0.263 0.737 30 H 0.060 0.940 31 H 0.082 0.918 32 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.800 14.426 1.894 14.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.151 4.151 3 C -0.094 4.094 4 C -0.174 4.174 5 C 0.005 3.995 6 C -0.176 4.176 7 C -0.040 4.040 8 C -0.025 4.025 9 C 0.050 3.950 10 C -0.548 4.548 11 H 0.075 0.925 12 C -0.141 4.141 13 N -0.532 5.532 14 Si 0.725 3.275 15 H -0.206 1.206 16 H -0.211 1.211 17 H -0.198 1.198 18 N -0.087 5.087 19 N -0.215 5.215 20 C -0.023 4.023 21 H 0.080 0.920 22 H 0.077 0.923 23 H 0.083 0.917 24 H 0.138 0.862 25 H 0.133 0.867 26 H 0.148 0.852 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.100 0.900 32 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.373 14.195 1.944 14.393 hybrid contribution -0.656 -0.079 -0.985 1.187 sum -2.030 14.117 0.958 14.294 Atomic orbital electron populations 1.20642 0.91391 1.02233 1.01611 1.19290 0.95890 0.92729 1.07217 1.20438 0.93008 0.97324 0.98599 1.19622 0.93758 0.94508 1.09531 1.18884 0.85198 0.95537 0.99868 1.20011 0.94476 0.91852 1.11221 1.20348 0.91625 0.97990 0.94083 1.24706 0.87241 0.98282 0.92319 1.17911 0.98542 0.79986 0.98571 1.20913 1.49582 0.93286 0.91013 0.92509 1.24949 0.95112 0.96606 0.97403 1.69947 1.48916 1.03632 1.30673 0.86497 0.78009 0.78382 0.84606 1.20571 1.21054 1.19804 1.76736 1.23302 0.86156 1.22550 1.48179 1.02754 1.04135 1.66395 1.21518 0.88908 0.89903 1.02007 0.92000 0.92292 0.91716 0.86216 0.86653 0.85194 0.94118 0.93782 0.92712 0.92149 0.89957 0.90758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.21 9.99 36.00 0.36 -0.85 16 2 C -0.15 -2.30 5.84 -104.99 -0.61 -2.92 16 3 C -0.07 -1.03 9.60 -39.91 -0.38 -1.42 16 4 C -0.15 -2.33 9.97 -39.79 -0.40 -2.73 16 5 C 0.12 2.30 6.87 -84.17 -0.58 1.72 16 6 C -0.17 -3.59 6.33 -105.21 -0.67 -4.25 16 7 C -0.02 -0.38 9.68 -39.59 -0.38 -0.76 16 8 C 0.15 3.67 6.62 -80.19 -0.53 3.13 16 9 C 0.09 2.36 5.57 -29.03 -0.16 2.20 16 10 C -0.51 -14.49 9.09 -34.44 -0.31 -14.81 16 11 H 0.06 1.64 7.74 -52.49 -0.41 1.24 16 12 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 13 N -0.89 -26.14 13.29 55.43 0.74 -25.41 16 14 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 15 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 16 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 17 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 18 N -0.28 -6.44 12.40 34.84 0.43 -6.01 16 19 N -0.43 -8.28 4.05 -65.47 -0.27 -8.55 16 20 C 0.12 1.59 11.40 59.85 0.68 2.27 16 21 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 22 H 0.06 0.59 8.08 -51.93 -0.42 0.17 16 23 H 0.06 0.77 8.07 -51.93 -0.42 0.35 16 24 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 25 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 26 H 0.13 2.39 8.06 -52.48 -0.42 1.96 16 27 H 0.04 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.04 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 282.25 15.07 4.25 4.25 Total: -1.00 -31.97 282.25 -7.13 -39.10 By element: Atomic # 1 Polarization: 0.88 SS G_CDS: -4.18 Total: -3.30 kcal Atomic # 6 Polarization: -13.69 SS G_CDS: -3.08 Total: -16.77 kcal Atomic # 7 Polarization: -40.86 SS G_CDS: 0.90 Total: -39.96 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -31.97 -7.13 -39.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261301156.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.090 kcal (2) G-P(sol) polarization free energy of solvation -31.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds