Wall clock time and date at job start Mon Mar 30 2020 03:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38966 * 119.68561 * 2 1 4 4 C 1.36592 * 120.81800 * 180.02562 * 3 2 1 5 5 C 1.39289 * 119.84743 * 359.96060 * 4 3 2 6 6 C 1.40811 * 119.41905 * 0.03925 * 5 4 3 7 7 C 1.36459 * 119.68901 * 180.02562 * 2 1 3 8 8 C 1.45934 * 106.31832 * 179.97438 * 6 5 4 9 9 C 1.50703 * 126.10616 * 179.97438 * 8 6 5 10 10 C 1.50699 * 109.46987 * 89.99661 * 9 8 6 11 11 H 1.07999 * 120.00202 * 0.02562 * 10 9 8 12 12 C 1.37882 * 119.99483 * 179.97438 * 10 9 8 13 13 N 1.31516 * 120.00179 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 119.99797 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47033 * 89.99941 * 14 12 10 16 16 H 1.48500 * 109.47249 * 209.99949 * 14 12 10 17 17 H 1.48504 * 109.47023 * 330.00006 * 14 12 10 18 18 N 1.30240 * 107.78523 * 359.97438 * 8 6 5 19 19 N 1.37045 * 133.84777 * 180.02562 * 5 4 3 20 20 C 1.46503 * 125.46033 * 359.75108 * 19 5 4 21 21 H 1.09005 * 109.47041 * 269.97678 * 1 2 3 22 22 H 1.09004 * 109.47230 * 29.97303 * 1 2 3 23 23 H 1.09000 * 109.47421 * 149.97882 * 1 2 3 24 24 H 1.08004 * 119.59640 * 0.02562 * 3 2 1 25 25 H 1.07993 * 120.07784 * 180.02562 * 4 3 2 26 26 H 1.08004 * 120.18133 * 359.97438 * 7 2 1 27 27 H 1.09000 * 109.46669 * 210.00292 * 9 8 6 28 28 H 1.08999 * 109.46894 * 329.99399 * 9 8 6 29 29 H 0.97004 * 119.99948 * 179.97438 * 13 12 10 30 30 H 1.09005 * 109.46564 * 90.00287 * 20 19 5 31 31 H 1.09002 * 109.46914 * 210.00047 * 20 19 5 32 32 H 1.08992 * 109.47351 * 330.00995 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1952 1.2073 0.0000 4 6 3.5608 1.2343 -0.0005 5 6 4.2778 0.0401 -0.0002 6 6 3.5823 -1.1843 -0.0002 7 6 2.1829 -1.1855 -0.0005 8 6 4.5975 -2.2326 -0.0005 9 6 4.3406 -3.7176 -0.0001 10 6 4.2542 -4.2128 -1.4208 11 1 4.3738 -3.5215 -2.2419 12 6 4.0236 -5.5487 -1.6723 13 7 3.8785 -6.3906 -0.6724 14 14 3.9172 -6.1628 -3.4332 15 1 5.2687 -6.5637 -3.9002 16 1 3.0048 -7.3328 -3.4952 17 1 3.3935 -5.0800 -4.3042 18 7 5.7651 -1.6556 -0.0012 19 7 5.6138 -0.2651 -0.0002 20 6 6.7082 0.7089 -0.0056 21 1 -0.3633 -0.0004 1.0277 22 1 -0.3634 0.8902 -0.5134 23 1 -0.3634 -0.8898 -0.5141 24 1 1.6435 2.1358 0.0004 25 1 4.0835 2.1793 -0.0001 26 1 1.6407 -2.1196 -0.0005 27 1 5.1559 -4.2271 0.5135 28 1 3.4021 -3.9238 0.5143 29 1 3.7158 -7.3304 -0.8493 30 1 6.9805 0.9550 1.0208 31 1 7.5708 0.2833 -0.5183 32 1 6.3874 1.6130 -0.5229 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261301156.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:29 Heat of formation + Delta-G solvation = 52.578955 kcal Electronic energy + Delta-G solvation = -15285.628622 eV Core-core repulsion = 12825.077846 eV Total energy + Delta-G solvation = -2460.550776 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.12033 -38.48040 -35.85777 -34.30536 -32.68868 -31.08042 -30.72874 -28.03967 -26.50328 -24.71278 -23.80514 -21.92968 -20.51425 -18.58245 -17.73969 -17.42595 -16.52688 -16.34437 -16.03688 -14.99324 -14.74203 -14.51709 -14.39330 -14.24657 -13.72754 -13.47568 -13.30602 -12.93770 -12.71900 -12.67396 -12.57920 -12.17153 -12.07153 -11.81590 -11.56860 -11.36503 -10.63126 -10.60568 -9.50584 -8.58782 -8.22056 -6.37064 0.09730 0.61811 1.37715 1.40099 1.50606 1.64223 1.65570 2.39947 2.89287 3.07046 3.63103 3.67958 3.90149 4.09320 4.30848 4.43850 4.47257 4.50643 4.63614 4.64839 4.88609 4.97472 4.98333 5.09727 5.20084 5.27137 5.38191 5.50025 5.66482 5.67241 5.78314 6.03730 6.09884 6.30637 6.69767 6.85091 7.30397 8.86256 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.022957 B = 0.008153 C = 0.006634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.354261 B = 3433.418778 C = 4219.653847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.135 4.135 3 C -0.063 4.063 4 C -0.142 4.142 5 C 0.105 3.895 6 C -0.204 4.204 7 C -0.056 4.056 8 C 0.115 3.885 9 C 0.102 3.898 10 C -0.528 4.528 11 H 0.045 0.955 12 C 0.012 3.988 13 N -0.924 5.924 14 Si 0.968 3.032 15 H -0.273 1.273 16 H -0.271 1.271 17 H -0.268 1.268 18 N -0.305 5.305 19 N -0.426 5.426 20 C 0.106 3.894 21 H 0.077 0.923 22 H 0.088 0.912 23 H 0.058 0.942 24 H 0.170 0.830 25 H 0.158 0.842 26 H 0.113 0.887 27 H 0.009 0.991 28 H 0.027 0.973 29 H 0.269 0.731 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.870 17.671 0.909 18.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.137 4.137 3 C -0.083 4.083 4 C -0.163 4.163 5 C -0.010 4.010 6 C -0.212 4.212 7 C -0.077 4.077 8 C -0.061 4.061 9 C 0.063 3.937 10 C -0.567 4.567 11 H 0.063 0.937 12 C -0.187 4.187 13 N -0.563 5.563 14 Si 0.792 3.208 15 H -0.198 1.198 16 H -0.196 1.196 17 H -0.193 1.193 18 N -0.118 5.118 19 N -0.214 5.214 20 C -0.033 4.033 21 H 0.096 0.904 22 H 0.107 0.893 23 H 0.077 0.923 24 H 0.188 0.812 25 H 0.176 0.824 26 H 0.131 0.869 27 H 0.027 0.973 28 H 0.045 0.955 29 H 0.078 0.922 30 H 0.099 0.901 31 H 0.102 0.898 32 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -2.441 17.450 0.968 17.647 hybrid contribution -0.344 -0.936 -0.614 1.171 sum -2.785 16.514 0.353 16.751 Atomic orbital electron populations 1.20736 0.88700 1.03442 1.02968 1.19768 0.97855 0.92010 1.04074 1.21025 0.92843 0.98480 0.95959 1.20160 0.94303 0.94477 1.07382 1.19315 0.84920 0.96101 1.00645 1.20183 0.95464 0.92023 1.13512 1.20423 0.90956 0.99110 0.97170 1.24232 0.89137 0.97505 0.95217 1.17500 0.96333 0.82493 0.97361 1.21093 1.50298 0.93762 0.91506 0.93664 1.25849 0.94266 0.96524 1.02075 1.70057 1.49168 1.04113 1.32981 0.85408 0.78420 0.78060 0.78930 1.19842 1.19609 1.19293 1.76506 1.23461 0.89159 1.22674 1.48505 1.04415 1.03019 1.65472 1.21988 0.87654 0.89755 1.03929 0.90443 0.89309 0.92332 0.81244 0.82445 0.86917 0.97252 0.95491 0.92196 0.90146 0.89847 0.87142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.10 9.99 71.24 0.71 -1.39 16 2 C -0.14 -3.87 5.84 -20.11 -0.12 -3.98 16 3 C -0.06 -1.48 9.60 22.06 0.21 -1.27 16 4 C -0.14 -3.75 9.97 22.14 0.22 -3.53 16 5 C 0.11 3.92 6.87 39.21 0.27 4.19 16 6 C -0.20 -9.06 6.33 -20.24 -0.13 -9.19 16 7 C -0.06 -2.16 9.68 22.27 0.22 -1.94 16 8 C 0.12 5.96 6.62 44.79 0.30 6.26 16 9 C 0.10 5.90 5.57 29.10 0.16 6.06 16 10 C -0.53 -31.84 9.09 25.60 0.23 -31.60 16 11 H 0.05 2.76 7.74 -2.91 -0.02 2.74 16 12 C 0.01 0.70 5.46 84.66 0.46 1.16 16 13 N -0.92 -56.17 13.29 21.45 0.28 -55.88 16 14 Si 0.97 45.42 29.54 68.60 2.03 47.44 16 15 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 16 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 17 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 18 N -0.30 -14.89 12.40 -43.69 -0.54 -15.43 16 19 N -0.43 -16.31 4.05 -361.03 -1.46 -17.77 16 20 C 0.11 2.61 11.40 127.77 1.46 4.07 16 21 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 22 H 0.09 1.34 8.08 -2.39 -0.02 1.32 16 23 H 0.06 1.29 8.07 -2.39 -0.02 1.27 16 24 H 0.17 2.39 8.06 -2.91 -0.02 2.37 16 25 H 0.16 2.84 8.06 -2.91 -0.02 2.82 16 26 H 0.11 4.52 8.06 -2.91 -0.02 4.49 16 27 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 30 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 31 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -74.45 282.25 5.40 -69.05 By element: Atomic # 1 Polarization: 2.66 SS G_CDS: 1.10 Total: 3.76 kcal Atomic # 6 Polarization: -35.16 SS G_CDS: 3.99 Total: -31.17 kcal Atomic # 7 Polarization: -87.37 SS G_CDS: -1.72 Total: -89.09 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.44 kcal Total: -74.45 5.40 -69.05 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261301156.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.629 kcal (2) G-P(sol) polarization free energy of solvation -74.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds