Wall clock time and date at job start Mon Mar 30 2020 03:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38010 * 119.88272 * 2 1 4 4 C 1.39641 * 119.99809 * 180.02562 * 3 2 1 5 5 C 1.43200 * 120.11811 * 180.02562 * 4 3 2 6 6 N 4.80236 * 134.53433 * 0.02562 * 2 1 3 7 7 C 1.39548 * 119.76613 * 0.02562 * 4 3 2 8 8 C 1.38621 * 119.77154 * 0.02562 * 7 4 3 9 9 N 1.39710 * 120.00042 * 179.97438 * 8 7 4 10 10 C 1.46497 * 119.99828 * 0.02562 * 9 8 7 11 11 H 1.08996 * 109.47049 * 324.99177 * 10 9 8 12 12 C 1.52997 * 109.47188 * 85.00068 * 10 9 8 13 13 C 1.50706 * 109.46582 * 204.99919 * 10 9 8 14 14 H 1.07999 * 120.00196 * 359.97438 * 13 10 9 15 15 C 1.37879 * 119.99394 * 179.97438 * 13 10 9 16 16 N 1.31514 * 119.99350 * 179.97438 * 15 13 10 17 17 Si 1.86789 * 120.00458 * 0.02562 * 15 13 10 18 18 H 1.48500 * 109.47356 * 89.99481 * 17 15 13 19 19 H 1.48501 * 109.47162 * 209.99853 * 17 15 13 20 20 H 1.48503 * 109.47180 * 329.99546 * 17 15 13 21 21 C 1.38210 * 119.88359 * 180.28436 * 2 1 3 22 22 H 1.09001 * 109.47237 * 89.99792 * 1 2 3 23 23 H 1.08999 * 109.47111 * 209.99602 * 1 2 3 24 24 H 1.09000 * 109.47070 * 329.99101 * 1 2 3 25 25 H 1.07999 * 120.00216 * 0.02685 * 3 2 1 26 26 H 1.08004 * 120.11249 * 179.97438 * 7 4 3 27 27 H 0.96996 * 119.99380 * 179.97438 * 9 8 7 28 28 H 1.09002 * 109.47153 * 299.99573 * 12 10 9 29 29 H 1.09001 * 109.46832 * 179.97438 * 12 10 9 30 30 H 1.09004 * 109.47261 * 59.99745 * 12 10 9 31 31 H 0.97005 * 119.99656 * 180.02562 * 16 15 13 32 32 H 1.08005 * 119.88489 * 0.02562 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1946 1.1966 0.0000 4 6 3.5910 1.1994 -0.0005 5 6 4.3071 2.4395 0.0000 6 7 4.8751 3.4233 0.0015 7 6 4.2863 -0.0105 -0.0016 8 6 3.5859 -1.2068 -0.0027 9 7 4.2771 -2.4209 -0.0043 10 6 5.7420 -2.4298 -0.0043 11 1 6.1104 -1.5895 -0.5927 12 6 6.2528 -2.3091 1.4328 13 6 6.2365 -3.7198 -0.6065 14 1 5.5301 -4.4592 -0.9540 15 6 7.5907 -3.9559 -0.7138 16 7 8.0221 -5.0818 -1.2389 17 14 8.8123 -2.6774 -0.1121 18 1 9.1329 -2.9322 1.3153 19 1 10.0548 -2.7608 -0.9211 20 1 8.2204 -1.3227 -0.2523 21 6 2.1956 -1.1983 -0.0059 22 1 -0.3634 0.0000 -1.0277 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3633 0.8899 0.5140 25 1 1.6527 2.1308 0.0004 26 1 5.3663 -0.0149 -0.0025 27 1 3.7869 -3.2579 -0.0047 28 1 5.8952 -1.3761 1.8684 29 1 7.3428 -2.3161 1.4328 30 1 5.8844 -3.1495 2.0212 31 1 8.9749 -5.2482 -1.3140 32 1 1.6518 -2.1315 -0.0110 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308121597.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:00 Heat of formation + Delta-G solvation = 50.773735 kcal Electronic energy + Delta-G solvation = -15081.480144 eV Core-core repulsion = 12620.851087 eV Total energy + Delta-G solvation = -2460.629057 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.51429 -36.64611 -35.92496 -33.02469 -32.27197 -30.92668 -28.00133 -26.83663 -25.22319 -23.68783 -21.84474 -19.75115 -18.47438 -16.87523 -16.10041 -15.82109 -15.03036 -14.76431 -14.10125 -13.63436 -13.40696 -13.29645 -13.09484 -12.79865 -12.73838 -12.48903 -12.25944 -12.06179 -11.75372 -11.40187 -11.27235 -11.03082 -10.72854 -10.27986 -9.72033 -9.62572 -9.30674 -8.75898 -8.55404 -6.91781 -6.28446 -4.31368 1.05549 1.77930 2.81251 3.15037 3.20266 3.25237 3.28210 3.96953 4.16049 4.20736 4.23198 4.95116 5.05139 5.30208 5.32553 5.44421 5.61765 5.64925 5.81087 5.98155 6.03269 6.14627 6.28088 6.42509 6.50765 6.55096 6.62392 6.71870 6.98593 7.11280 7.36728 7.62371 7.82096 8.29738 8.45861 8.73178 9.31195 10.83985 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.027707 B = 0.007391 C = 0.006107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.329339 B = 3787.634269 C = 4583.709904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.041 4.041 3 C -0.152 4.152 4 C 0.017 3.983 5 C 0.266 3.734 6 N -0.435 5.435 7 C -0.164 4.164 8 C 0.239 3.761 9 N -0.712 5.712 10 C 0.238 3.762 11 H 0.040 0.960 12 C -0.168 4.168 13 C -0.534 4.534 14 H 0.081 0.919 15 C 0.078 3.922 16 N -0.890 5.890 17 Si 0.887 3.113 18 H -0.276 1.276 19 H -0.293 1.293 20 H -0.266 1.266 21 C -0.183 4.183 22 H 0.070 0.930 23 H 0.066 0.934 24 H 0.065 0.935 25 H 0.120 0.880 26 H 0.131 0.869 27 H 0.399 0.601 28 H 0.035 0.965 29 H 0.047 0.953 30 H 0.057 0.943 31 H 0.268 0.732 32 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.229 7.544 3.456 14.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.042 4.042 3 C -0.175 4.175 4 C 0.013 3.987 5 C -0.049 4.049 6 N -0.110 5.110 7 C -0.189 4.189 8 C 0.129 3.871 9 N -0.334 5.334 10 C 0.134 3.866 11 H 0.057 0.943 12 C -0.227 4.227 13 C -0.572 4.572 14 H 0.099 0.901 15 C -0.126 4.126 16 N -0.527 5.527 17 Si 0.716 3.284 18 H -0.202 1.202 19 H -0.220 1.220 20 H -0.191 1.191 21 C -0.207 4.207 22 H 0.089 0.911 23 H 0.085 0.915 24 H 0.084 0.916 25 H 0.138 0.862 26 H 0.149 0.851 27 H 0.234 0.766 28 H 0.054 0.946 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -10.920 8.911 3.398 14.498 hybrid contribution 0.548 -0.225 0.313 0.670 sum -10.372 8.686 3.711 14.029 Atomic orbital electron populations 1.20774 0.91154 1.02627 1.02311 1.19386 0.95526 0.92046 0.97212 1.20526 0.91365 0.97847 1.07809 1.15672 0.92033 0.86075 1.04874 1.25882 0.92942 0.92876 0.93197 1.81183 1.08838 1.11596 1.09415 1.20703 1.00215 0.89671 1.08357 1.17766 0.90885 0.87074 0.91384 1.45241 1.07144 1.03817 1.77238 1.19129 0.76285 0.98867 0.92343 0.94268 1.22582 1.00017 1.00029 1.00035 1.20998 0.93058 1.01719 1.41420 0.90139 1.24851 0.98115 0.95255 0.94368 1.69864 1.15155 1.23862 1.43811 0.86876 0.80714 0.82431 0.78343 1.20235 1.22037 1.19091 1.20628 0.92009 0.98086 1.10019 0.91125 0.91498 0.91640 0.86155 0.85098 0.76580 0.94634 0.93486 0.92415 0.92194 0.85873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.94 10.00 36.01 0.36 -0.58 16 2 C -0.04 -0.48 5.87 -104.71 -0.61 -1.09 16 3 C -0.15 -1.88 9.40 -39.14 -0.37 -2.25 16 4 C 0.02 0.25 5.73 -106.96 -0.61 -0.36 16 5 C 0.27 4.14 15.33 -22.48 -0.34 3.79 16 6 N -0.43 -7.44 18.54 41.83 0.78 -6.67 16 7 C -0.16 -2.66 8.55 -38.95 -0.33 -2.99 16 8 C 0.24 3.81 6.63 -83.83 -0.56 3.26 16 9 N -0.71 -12.84 5.24 -53.33 -0.28 -13.12 16 10 C 0.24 5.13 1.84 -69.08 -0.13 5.00 16 11 H 0.04 0.89 5.54 -51.93 -0.29 0.60 16 12 C -0.17 -3.42 8.91 37.16 0.33 -3.09 16 13 C -0.53 -13.80 9.31 -34.44 -0.32 -14.12 16 14 H 0.08 2.23 7.98 -52.49 -0.42 1.81 16 15 C 0.08 2.11 5.45 -17.82 -0.10 2.02 16 16 N -0.89 -25.78 13.96 55.43 0.77 -25.01 16 17 Si 0.89 20.84 24.37 -169.99 -4.14 16.70 16 18 H -0.28 -6.31 6.87 56.52 0.39 -5.92 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.27 -5.99 6.53 56.52 0.37 -5.62 16 21 C -0.18 -2.42 9.53 -39.30 -0.37 -2.79 16 22 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 24 H 0.06 0.48 8.08 -51.93 -0.42 0.06 16 25 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 26 H 0.13 2.29 6.11 -52.48 -0.32 1.97 16 27 H 0.40 6.74 8.55 -40.82 -0.35 6.39 16 28 H 0.03 0.64 7.70 -51.93 -0.40 0.24 16 29 H 0.05 1.00 3.27 -51.93 -0.17 0.83 16 30 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 32 H 0.12 1.41 8.06 -52.48 -0.42 0.99 16 LS Contribution 275.19 15.07 4.15 4.15 Total: -1.00 -28.23 275.19 -5.44 -33.67 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -3.66 Total: 3.49 kcal Atomic # 6 Polarization: -10.16 SS G_CDS: -3.06 Total: -13.22 kcal Atomic # 7 Polarization: -46.06 SS G_CDS: 1.27 Total: -44.79 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.14 Total: 16.70 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -28.23 -5.44 -33.67 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308121597.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.443 kcal (2) G-P(sol) polarization free energy of solvation -28.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds